Wall clock time and date at job start Mon Mar 30 2020 01:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.48219 * 2 1 4 4 C 1.53093 * 109.47794 * 120.03818 * 2 1 3 5 5 C 1.53180 * 109.16207 * 177.58907 * 4 2 1 6 6 H 1.08996 * 109.54301 * 183.15160 * 5 4 2 7 7 C 1.50702 * 109.54504 * 62.96901 * 5 4 2 8 8 O 1.21282 * 119.99757 * 0.02562 * 7 5 4 9 9 N 1.34768 * 119.99956 * 180.02562 * 7 5 4 10 10 C 1.47066 * 136.05785 * 359.62854 * 9 7 5 11 11 C 1.53242 * 88.08520 * 207.20601 * 10 9 7 12 12 O 1.42897 * 114.01487 * 87.71630 * 11 10 9 13 13 C 1.50695 * 114.50707 * 220.45997 * 11 10 9 14 14 H 1.07996 * 120.00191 * 93.84961 * 13 11 10 15 15 C 1.37880 * 119.99977 * 273.84236 * 13 11 10 16 16 N 1.31509 * 119.99892 * 0.02562 * 15 13 11 17 17 Si 1.86799 * 119.99874 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47330 * 60.00386 * 17 15 13 19 19 H 1.48502 * 109.47179 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47191 * 300.00252 * 17 15 13 21 21 C 1.47071 * 136.05524 * 180.02562 * 9 7 5 22 22 C 1.53180 * 109.03380 * 303.01706 * 5 4 2 23 23 C 1.53096 * 109.16300 * 56.98167 * 22 5 4 24 24 O 1.42905 * 109.47459 * 239.97526 * 2 1 3 25 25 H 1.08997 * 109.47519 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46984 * 300.02356 * 1 2 3 27 27 H 1.08998 * 109.46773 * 60.01722 * 1 2 3 28 28 H 1.09000 * 109.52171 * 297.49519 * 4 2 1 29 29 H 1.08994 * 109.52452 * 57.68283 * 4 2 1 30 30 H 1.09001 * 113.47469 * 321.94067 * 10 9 7 31 31 H 1.09008 * 113.46480 * 92.38220 * 10 9 7 32 32 H 0.96701 * 113.99882 * 86.39336 * 12 11 10 33 33 H 0.97004 * 119.99652 * 179.97438 * 16 15 13 34 34 H 1.09007 * 113.46018 * 267.61777 * 21 9 7 35 35 H 1.08993 * 113.47040 * 37.99841 * 21 9 7 36 36 H 1.09001 * 109.52400 * 297.07495 * 22 5 4 37 37 H 1.09004 * 109.52264 * 176.88591 * 22 5 4 38 38 H 1.09005 * 109.47867 * 182.40583 * 23 22 5 39 39 H 1.09001 * 109.48124 * 62.37304 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0405 -0.7225 1.2495 5 6 3.5711 -0.7712 1.2121 6 1 3.9391 -1.3331 2.0704 7 6 4.1213 0.6312 1.2539 8 8 3.3651 1.5778 1.3088 9 7 5.4535 0.8333 1.2304 10 6 6.6527 -0.0163 1.1754 11 6 7.4147 1.1014 1.8955 12 8 7.3419 1.0301 3.3208 13 6 8.8115 1.3373 1.3814 14 1 8.9892 2.0883 0.6260 15 6 9.8627 0.5944 1.8756 16 7 9.6462 -0.3204 2.7953 17 14 11.5942 0.8874 1.2389 18 1 11.9898 2.2928 1.5093 19 1 12.5362 -0.0332 1.9247 20 1 11.6329 0.6349 -0.2240 21 6 6.3481 2.0004 1.2554 22 6 4.0175 -1.4603 -0.0811 23 6 3.4306 -0.7093 -1.2792 24 8 2.0065 -0.6741 -1.1665 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5142 0.8898 27 1 -0.3633 0.5136 -0.8901 28 1 1.7148 -0.1846 2.1398 29 1 1.6442 -1.7376 1.2707 30 1 6.5653 -0.9293 1.7644 31 1 7.0080 -0.2005 0.1615 32 1 8.0152 0.4630 3.7211 33 1 10.3857 -0.8433 3.1427 34 1 6.6214 2.3591 0.2629 35 1 6.0016 2.7990 1.9113 36 1 3.6612 -2.4904 -0.0867 37 1 5.1058 -1.4500 -0.1423 38 1 3.7099 -1.2202 -2.2007 39 1 3.8193 0.3090 -1.2958 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321088243.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:47 Heat of formation + Delta-G solvation = -121.835470 kcal Electronic energy + Delta-G solvation = -21862.055203 eV Core-core repulsion = 18576.923768 eV Total energy + Delta-G solvation = -3285.131435 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.86793 -40.34275 -38.64631 -35.94603 -34.74612 -34.13402 -33.72639 -30.46562 -28.86537 -27.42929 -26.89812 -25.23839 -23.67198 -22.54533 -21.28462 -19.77601 -19.09444 -17.81334 -17.36603 -17.26403 -17.06044 -16.68000 -16.35359 -16.00607 -15.47273 -15.07754 -14.96320 -14.47709 -14.32729 -13.97197 -13.52513 -13.42742 -13.35243 -13.33302 -12.95390 -12.85990 -12.76761 -12.72077 -12.22910 -12.19207 -12.08318 -11.75004 -11.53798 -11.29775 -10.89901 -10.65574 -10.35478 -10.15112 -9.59690 -8.28303 -6.45520 1.48490 1.50792 1.57260 1.59272 1.94280 2.40517 2.80404 2.93792 3.37513 3.59090 3.73823 3.74977 3.92508 3.99162 4.13357 4.23578 4.35100 4.47798 4.50552 4.57885 4.64544 4.68485 4.73252 4.77845 4.81362 4.87713 4.89533 4.96041 5.01071 5.06938 5.19161 5.23201 5.28937 5.71900 5.90169 6.24405 6.60114 6.87010 7.11978 7.28791 7.47711 8.77695 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.037766 B = 0.004769 C = 0.004612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.222767 B = 5869.752130 C = 6069.558275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.070 3.930 3 H 0.050 0.950 4 C -0.121 4.121 5 C -0.105 4.105 6 H 0.106 0.894 7 C 0.531 3.469 8 O -0.590 6.590 9 N -0.634 5.634 10 C 0.091 3.909 11 C 0.218 3.782 12 O -0.588 6.588 13 C -0.555 4.555 14 H 0.074 0.926 15 C 0.035 3.965 16 N -0.917 5.917 17 Si 0.969 3.031 18 H -0.276 1.276 19 H -0.282 1.282 20 H -0.266 1.266 21 C 0.104 3.896 22 C -0.140 4.140 23 C 0.060 3.940 24 O -0.389 6.389 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.100 0.900 30 H 0.064 0.936 31 H 0.095 0.905 32 H 0.390 0.610 33 H 0.277 0.723 34 H 0.101 0.899 35 H 0.049 0.951 36 H 0.106 0.894 37 H 0.080 0.920 38 H 0.120 0.880 39 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.170 -5.390 -5.645 12.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.013 3.987 3 H 0.068 0.932 4 C -0.159 4.159 5 C -0.126 4.126 6 H 0.124 0.876 7 C 0.323 3.677 8 O -0.472 6.472 9 N -0.367 5.367 10 C -0.032 4.032 11 C 0.177 3.823 12 O -0.401 6.401 13 C -0.593 4.593 14 H 0.092 0.908 15 C -0.166 4.166 16 N -0.557 5.557 17 Si 0.794 3.206 18 H -0.201 1.201 19 H -0.208 1.208 20 H -0.191 1.191 21 C -0.019 4.019 22 C -0.178 4.178 23 C -0.016 4.016 24 O -0.309 6.309 25 H 0.093 0.907 26 H 0.097 0.903 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.119 0.881 30 H 0.082 0.918 31 H 0.113 0.887 32 H 0.246 0.754 33 H 0.087 0.913 34 H 0.119 0.881 35 H 0.068 0.932 36 H 0.124 0.876 37 H 0.099 0.901 38 H 0.138 0.862 39 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -10.326 -4.765 -5.716 12.728 hybrid contribution 1.745 0.135 0.357 1.786 sum -8.582 -4.630 -5.359 11.127 Atomic orbital electron populations 1.21716 0.91310 1.03416 1.02802 1.22376 0.96407 0.95379 0.84545 0.93181 1.21993 0.92085 1.02708 0.99096 1.21402 0.97762 0.91754 1.01660 0.87629 1.20797 0.79577 0.92285 0.75024 1.90568 1.57181 1.45795 1.53697 1.49770 1.03835 1.12543 1.70524 1.23907 0.80990 0.96870 1.01393 1.19776 0.91881 0.91161 0.79482 1.86031 1.60166 1.73252 1.20664 1.21624 0.92012 1.21703 1.23911 0.90827 1.25737 1.03156 0.93377 0.94288 1.69312 1.34186 1.23158 1.29081 0.85428 0.78323 0.77976 0.78851 1.20115 1.20765 1.19071 1.23326 0.87308 0.90786 1.00436 1.22193 1.01998 1.01128 0.92492 1.22614 0.80902 0.98676 0.99453 1.87846 1.21142 1.78069 1.43827 0.90730 0.90338 0.91977 0.91011 0.88120 0.91800 0.88713 0.75448 0.91290 0.88117 0.93205 0.87564 0.90126 0.86199 0.95873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 9.56 71.98 0.69 -2.30 16 2 C 0.07 2.02 2.98 30.63 0.09 2.11 16 3 H 0.05 1.80 5.81 -2.39 -0.01 1.79 16 4 C -0.12 -3.25 4.56 30.69 0.14 -3.11 16 5 C -0.10 -3.15 2.91 -11.42 -0.03 -3.18 16 6 H 0.11 3.02 8.14 -2.39 -0.02 3.00 16 7 C 0.53 20.90 6.08 87.66 0.53 21.43 16 8 O -0.59 -26.45 14.62 -3.03 -0.04 -26.49 16 9 N -0.63 -25.98 3.64 -859.19 -3.13 -29.11 16 10 C 0.09 3.70 6.16 83.10 0.51 4.21 16 11 C 0.22 10.27 1.57 -11.30 -0.02 10.25 16 12 O -0.59 -30.44 13.53 -148.98 -2.02 -32.45 16 13 C -0.55 -26.96 8.70 25.60 0.22 -26.74 16 14 H 0.07 3.46 7.81 -2.91 -0.02 3.44 16 15 C 0.04 1.68 5.39 84.66 0.46 2.13 16 16 N -0.92 -45.02 11.01 21.45 0.24 -44.79 16 17 Si 0.97 38.22 29.54 68.60 2.03 40.24 16 18 H -0.28 -10.94 7.11 99.48 0.71 -10.23 16 19 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16 20 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 21 C 0.10 4.53 8.03 83.18 0.67 5.20 16 22 C -0.14 -3.56 5.56 30.69 0.17 -3.39 16 23 C 0.06 1.61 6.62 72.01 0.48 2.09 16 24 O -0.39 -11.22 10.41 -148.98 -1.55 -12.77 16 25 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.07 2.02 8.02 -2.39 -0.02 2.00 16 29 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 31 H 0.09 3.56 8.03 -2.38 -0.02 3.54 16 32 H 0.39 20.34 6.32 -74.06 -0.47 19.88 16 33 H 0.28 12.92 8.31 -92.71 -0.77 12.15 16 34 H 0.10 3.97 8.10 -2.38 -0.02 3.95 16 35 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.08 2.10 6.31 -2.39 -0.02 2.09 16 38 H 0.12 2.55 8.14 -2.38 -0.02 2.53 16 39 H 0.02 0.73 7.38 -2.39 -0.02 0.71 16 Total: -1.00 -58.14 311.57 0.01 -58.13 By element: Atomic # 1 Polarization: 37.96 SS G_CDS: 0.58 Total: 38.54 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: 3.91 Total: 8.71 kcal Atomic # 7 Polarization: -71.01 SS G_CDS: -2.89 Total: -73.90 kcal Atomic # 8 Polarization: -68.11 SS G_CDS: -3.61 Total: -71.72 kcal Atomic # 14 Polarization: 38.22 SS G_CDS: 2.03 Total: 40.24 kcal Total: -58.14 0.01 -58.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321088243.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.707 kcal (2) G-P(sol) polarization free energy of solvation -58.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds