Wall clock time and date at job start Mon Mar 30 2020 01:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.47273 * 2 1 4 4 C 1.50705 * 109.46858 * 119.99833 * 2 1 3 5 5 H 1.07995 * 120.00017 * 120.00126 * 4 2 1 6 6 C 1.37882 * 119.99592 * 299.99725 * 4 2 1 7 7 N 1.31516 * 119.99708 * 180.02562 * 6 4 2 8 8 Si 1.86801 * 120.00404 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47148 * 89.99752 * 8 6 4 10 10 H 1.48500 * 109.47119 * 210.00088 * 8 6 4 11 11 H 1.48505 * 109.46989 * 329.99760 * 8 6 4 12 12 C 1.50693 * 109.47262 * 239.99651 * 2 1 3 13 13 O 1.20824 * 119.99860 * 240.00611 * 12 2 1 14 14 O 1.34230 * 120.00189 * 59.99709 * 12 2 1 15 15 C 1.45198 * 117.00333 * 179.97438 * 14 12 2 16 16 C 1.50691 * 109.47322 * 180.02562 * 15 14 12 17 17 O 1.21278 * 120.00190 * 0.02562 * 16 15 14 18 18 N 1.34775 * 120.00270 * 180.02562 * 16 15 14 19 19 C 1.46504 * 120.00207 * 180.02562 * 18 16 15 20 20 C 1.53003 * 109.46983 * 179.97438 * 19 18 16 21 21 C 1.53786 * 113.61503 * 85.86203 * 20 19 18 22 22 C 1.54049 * 86.98426 * 140.01654 * 21 20 19 23 23 C 1.53781 * 113.61337 * 183.46996 * 20 19 18 24 24 H 1.08991 * 109.47335 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46899 * 300.00569 * 1 2 3 26 26 H 1.09000 * 109.46883 * 60.00251 * 1 2 3 27 27 H 0.96995 * 120.00155 * 180.02562 * 7 6 4 28 28 H 1.09000 * 109.46798 * 60.00512 * 15 14 12 29 29 H 1.08994 * 109.47193 * 300.01069 * 15 14 12 30 30 H 0.96999 * 120.00146 * 359.97438 * 18 16 15 31 31 H 1.09000 * 109.47232 * 59.99775 * 19 18 16 32 32 H 1.08997 * 109.47041 * 299.99591 * 19 18 16 33 33 H 1.09002 * 112.85017 * 314.66585 * 20 19 18 34 34 H 1.08992 * 113.61675 * 254.61398 * 21 20 19 35 35 H 1.09000 * 113.60973 * 25.51686 * 21 20 19 36 36 H 1.09005 * 113.62125 * 220.02158 * 22 21 20 37 37 H 1.09003 * 113.61268 * 89.11946 * 22 21 20 38 38 H 1.08999 * 113.61567 * 334.48261 * 23 20 19 39 39 H 1.09000 * 113.61379 * 105.30384 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 2.1379 -0.8588 3.5567 8 14 0.6248 1.2793 2.6541 9 1 -0.8028 0.8729 2.6997 10 1 0.9759 1.9954 3.9067 11 1 0.8471 2.1767 1.4919 12 6 2.0324 -0.7104 -1.2303 13 8 2.7270 -1.6929 -1.1194 14 8 1.7081 -0.2520 -2.4495 15 6 2.2278 -0.9859 -3.5895 16 6 1.7638 -0.3289 -4.8638 17 8 1.0644 0.6608 -4.8160 18 7 2.1259 -0.8410 -6.0567 19 6 1.6753 -0.2019 -7.2956 20 6 2.2228 -0.9754 -8.4968 21 6 1.3415 -2.1631 -8.9184 22 6 1.6390 -1.7617 -10.3756 23 6 1.8760 -0.3355 -9.8515 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.9033 -0.5276 4.4376 28 1 1.8643 -2.0130 -3.5567 29 1 3.3172 -0.9849 -3.5564 30 1 2.6856 -1.6323 -6.0950 31 1 2.0398 0.8248 -7.3282 32 1 0.5858 -0.2020 -7.3289 33 1 3.2774 -1.2300 -8.3914 34 1 1.7527 -3.1329 -8.6385 35 1 0.2939 -2.0500 -8.6396 36 1 0.7764 -1.8462 -11.0367 37 1 2.5340 -2.2312 -10.7839 38 1 0.9742 0.2763 -9.8274 39 1 2.7182 0.1703 -10.3238 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327179513.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:54 Heat of formation + Delta-G solvation = -105.828736 kcal Electronic energy + Delta-G solvation = -20089.348025 eV Core-core repulsion = 16804.910694 eV Total energy + Delta-G solvation = -3284.437331 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.25951 -39.60017 -38.72669 -35.81067 -34.59536 -33.98498 -31.37558 -29.88224 -27.45560 -26.04175 -25.16812 -23.61548 -22.83949 -20.88537 -19.84817 -19.73656 -17.42175 -17.15104 -16.61931 -16.28558 -16.13367 -15.66894 -15.36488 -15.01251 -14.67733 -14.30929 -13.82205 -13.54129 -13.07739 -12.88517 -12.53906 -12.40462 -12.35106 -12.21611 -11.99179 -11.54035 -11.05131 -11.04085 -10.84801 -10.70188 -10.68050 -10.40617 -10.29930 -9.88002 -9.66769 -9.30007 -9.28480 -9.16188 -8.63595 -6.12031 -4.14877 2.51516 2.55107 3.08862 3.25096 3.35383 3.37096 3.62998 4.13961 4.19258 4.26579 4.34670 4.42063 4.63970 4.85326 5.04734 5.16517 5.19032 5.19862 5.28533 5.31638 5.37536 5.48391 5.53203 5.59853 5.72673 5.77932 6.01367 6.19059 6.20968 6.35020 6.42756 6.72986 6.99393 7.11556 7.25914 7.47430 8.07780 8.38820 8.65422 9.02193 9.44894 11.00101 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.052548 B = 0.003039 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.722231 B = 9212.153217 C = 9524.877663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.027 3.973 3 H 0.066 0.934 4 C -0.518 4.518 5 H 0.095 0.905 6 C 0.076 3.924 7 N -0.891 5.891 8 Si 0.882 3.118 9 H -0.275 1.275 10 H -0.294 1.294 11 H -0.263 1.263 12 C 0.475 3.525 13 O -0.502 6.502 14 O -0.343 6.343 15 C 0.045 3.955 16 C 0.516 3.484 17 O -0.515 6.515 18 N -0.731 5.731 19 C 0.131 3.869 20 C -0.126 4.126 21 C -0.138 4.138 22 C -0.143 4.143 23 C -0.131 4.131 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.047 0.953 27 H 0.267 0.733 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.402 0.598 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.700 -0.739 -26.184 26.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.008 3.992 3 H 0.084 0.916 4 C -0.556 4.556 5 H 0.113 0.887 6 C -0.127 4.127 7 N -0.529 5.529 8 Si 0.712 3.288 9 H -0.202 1.202 10 H -0.221 1.221 11 H -0.188 1.188 12 C 0.318 3.682 13 O -0.388 6.388 14 O -0.261 6.261 15 C -0.033 4.033 16 C 0.301 3.699 17 O -0.389 6.389 18 N -0.386 5.386 19 C 0.008 3.992 20 C -0.144 4.144 21 C -0.175 4.175 22 C -0.181 4.181 23 C -0.169 4.169 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.236 0.764 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.115 0.885 34 H 0.087 0.913 35 H 0.102 0.898 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.998 -0.316 -25.915 25.936 hybrid contribution -0.157 0.186 0.156 0.289 sum -1.155 -0.130 -25.759 25.785 Atomic orbital electron populations 1.22099 0.96253 1.01779 1.00282 1.19157 0.94092 0.97752 0.88236 0.91627 1.20903 1.33070 1.14554 0.87077 0.88731 1.24906 0.95621 0.96652 0.95521 1.69863 1.44972 1.40085 0.97949 0.86927 0.80779 0.83675 0.77424 1.20195 1.22085 1.18808 1.24700 0.76948 0.83206 0.83332 1.90547 1.35667 1.26100 1.86464 1.86683 1.69987 1.54944 1.14450 1.22472 1.00468 0.96360 0.84039 1.20285 0.80481 0.84547 0.84596 1.90745 1.36092 1.24976 1.87120 1.45831 1.54874 1.32640 1.05231 1.21379 0.99555 0.96680 0.81615 1.22840 1.00385 0.97294 0.93922 1.23065 1.00248 0.98017 0.96214 1.22859 1.01901 0.96654 0.96645 1.22871 1.02160 0.96788 0.95110 0.92379 0.92957 0.93374 0.92312 0.88603 0.88605 0.76404 0.91284 0.91225 0.88489 0.91265 0.89782 0.91309 0.90134 0.89685 0.91137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 8.60 37.16 0.32 -2.91 16 2 C 0.03 0.66 2.33 -92.92 -0.22 0.44 16 3 H 0.07 1.57 7.20 -51.93 -0.37 1.19 16 4 C -0.52 -14.92 8.96 -34.44 -0.31 -15.22 16 5 H 0.09 3.04 7.00 -52.49 -0.37 2.67 16 6 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 7 N -0.89 -27.24 13.96 55.43 0.77 -26.46 16 8 Si 0.88 21.44 24.37 -169.99 -4.14 17.30 16 9 H -0.28 -6.47 6.87 56.52 0.39 -6.08 16 10 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 11 H -0.26 -6.07 6.53 56.52 0.37 -5.70 16 12 C 0.47 10.82 7.25 36.00 0.26 11.08 16 13 O -0.50 -12.37 15.21 -18.75 -0.29 -12.65 16 14 O -0.34 -6.82 9.66 -45.90 -0.44 -7.27 16 15 C 0.04 0.66 5.94 36.00 0.21 0.87 16 16 C 0.52 7.23 7.91 -10.99 -0.09 7.14 16 17 O -0.52 -9.47 16.50 -14.10 -0.23 -9.71 16 18 N -0.73 -6.90 5.56 -60.29 -0.33 -7.24 16 19 C 0.13 1.11 5.50 -4.04 -0.02 1.09 16 20 C -0.13 -0.74 3.75 -89.80 -0.34 -1.07 16 21 C -0.14 -0.78 7.65 -25.77 -0.20 -0.97 16 22 C -0.14 -0.72 8.09 -25.78 -0.21 -0.93 16 23 C -0.13 -0.70 7.64 -25.92 -0.20 -0.90 16 24 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 25 H 0.05 1.17 3.27 -51.93 -0.17 1.00 16 26 H 0.05 0.94 8.11 -51.93 -0.42 0.52 16 27 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 28 H 0.10 1.26 8.13 -51.93 -0.42 0.83 16 29 H 0.10 1.25 8.13 -51.93 -0.42 0.83 16 30 H 0.40 2.61 8.47 -40.82 -0.35 2.26 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.66 7.88 -51.93 -0.41 0.25 16 33 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.08 0.52 7.92 -51.93 -0.41 0.11 16 36 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.08 0.46 8.10 -51.93 -0.42 0.04 16 39 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 LS Contribution 324.35 15.07 4.89 4.89 Total: -1.00 -34.59 324.35 -6.56 -41.15 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -5.90 Total: -0.71 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -0.88 Total: 0.70 kcal Atomic # 7 Polarization: -34.14 SS G_CDS: 0.44 Total: -33.70 kcal Atomic # 8 Polarization: -28.67 SS G_CDS: -0.96 Total: -29.63 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.14 Total: 17.30 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.59 -6.56 -41.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327179513.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.678 kcal (2) G-P(sol) polarization free energy of solvation -34.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds