Wall clock time and date at job start Mon Mar 30 2020 01:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.47273 * 2 1 4 4 C 1.50705 * 109.46858 * 119.99833 * 2 1 3 5 5 H 1.07995 * 120.00017 * 120.00126 * 4 2 1 6 6 C 1.37882 * 119.99592 * 299.99725 * 4 2 1 7 7 N 1.31516 * 119.99708 * 180.02562 * 6 4 2 8 8 Si 1.86801 * 120.00404 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47148 * 89.99752 * 8 6 4 10 10 H 1.48500 * 109.47119 * 210.00088 * 8 6 4 11 11 H 1.48505 * 109.46989 * 329.99760 * 8 6 4 12 12 C 1.50693 * 109.47262 * 239.99651 * 2 1 3 13 13 O 1.20824 * 119.99860 * 240.00611 * 12 2 1 14 14 O 1.34230 * 120.00189 * 59.99709 * 12 2 1 15 15 C 1.45198 * 117.00333 * 179.97438 * 14 12 2 16 16 C 1.50691 * 109.47322 * 180.02562 * 15 14 12 17 17 O 1.21278 * 120.00190 * 0.02562 * 16 15 14 18 18 N 1.34775 * 120.00270 * 180.02562 * 16 15 14 19 19 C 1.46504 * 120.00207 * 180.02562 * 18 16 15 20 20 C 1.53003 * 109.46983 * 179.97438 * 19 18 16 21 21 C 1.53786 * 113.61503 * 85.86203 * 20 19 18 22 22 C 1.54049 * 86.98426 * 140.01654 * 21 20 19 23 23 C 1.53781 * 113.61337 * 183.46996 * 20 19 18 24 24 H 1.08991 * 109.47335 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46899 * 300.00569 * 1 2 3 26 26 H 1.09000 * 109.46883 * 60.00251 * 1 2 3 27 27 H 0.96995 * 120.00155 * 180.02562 * 7 6 4 28 28 H 1.09000 * 109.46798 * 60.00512 * 15 14 12 29 29 H 1.08994 * 109.47193 * 300.01069 * 15 14 12 30 30 H 0.96999 * 120.00146 * 359.97438 * 18 16 15 31 31 H 1.09000 * 109.47232 * 59.99775 * 19 18 16 32 32 H 1.08997 * 109.47041 * 299.99591 * 19 18 16 33 33 H 1.09002 * 112.85017 * 314.66585 * 20 19 18 34 34 H 1.08992 * 113.61675 * 254.61398 * 21 20 19 35 35 H 1.09000 * 113.60973 * 25.51686 * 21 20 19 36 36 H 1.09005 * 113.62125 * 220.02158 * 22 21 20 37 37 H 1.09003 * 113.61268 * 89.11946 * 22 21 20 38 38 H 1.08999 * 113.61567 * 334.48261 * 23 20 19 39 39 H 1.09000 * 113.61379 * 105.30384 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 2.1379 -0.8588 3.5567 8 14 0.6248 1.2793 2.6541 9 1 -0.8028 0.8729 2.6997 10 1 0.9759 1.9954 3.9067 11 1 0.8471 2.1767 1.4919 12 6 2.0324 -0.7104 -1.2303 13 8 2.7270 -1.6929 -1.1194 14 8 1.7081 -0.2520 -2.4495 15 6 2.2278 -0.9859 -3.5895 16 6 1.7638 -0.3289 -4.8638 17 8 1.0644 0.6608 -4.8160 18 7 2.1259 -0.8410 -6.0567 19 6 1.6753 -0.2019 -7.2956 20 6 2.2228 -0.9754 -8.4968 21 6 1.3415 -2.1631 -8.9184 22 6 1.6390 -1.7617 -10.3756 23 6 1.8760 -0.3355 -9.8515 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.9033 -0.5276 4.4376 28 1 1.8643 -2.0130 -3.5567 29 1 3.3172 -0.9849 -3.5564 30 1 2.6856 -1.6323 -6.0950 31 1 2.0398 0.8248 -7.3282 32 1 0.5858 -0.2020 -7.3289 33 1 3.2774 -1.2300 -8.3914 34 1 1.7527 -3.1329 -8.6385 35 1 0.2939 -2.0500 -8.6396 36 1 0.7764 -1.8462 -11.0367 37 1 2.5340 -2.2312 -10.7839 38 1 0.9742 0.2763 -9.8274 39 1 2.7182 0.1703 -10.3238 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327179513.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:53 Heat of formation + Delta-G solvation = -129.385320 kcal Electronic energy + Delta-G solvation = -20090.369515 eV Core-core repulsion = 16804.910694 eV Total energy + Delta-G solvation = -3285.458821 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.68076 -40.73256 -39.52341 -37.46269 -35.98181 -35.55765 -33.45682 -30.93093 -28.39413 -27.18990 -26.47209 -25.25143 -23.63711 -21.91092 -21.59702 -20.26946 -19.04654 -18.54491 -18.25725 -17.71825 -17.22739 -17.09741 -16.50691 -16.18167 -15.93576 -15.32246 -15.07346 -14.79183 -14.58440 -14.16268 -14.06725 -13.76371 -13.33461 -13.31284 -12.93112 -12.88371 -12.62813 -12.61544 -12.26514 -11.83215 -11.54378 -11.53138 -11.38694 -11.29727 -11.20146 -11.16167 -10.89352 -10.77710 -10.19175 -8.32498 -6.42337 1.28310 1.31022 1.36088 1.40560 1.41437 1.50964 2.31039 2.38233 3.00649 3.52850 3.67283 3.74413 3.82960 3.98285 4.00324 4.04530 4.10431 4.31275 4.35621 4.50944 4.53075 4.69392 4.72104 4.88936 4.89879 4.94990 4.97956 5.12061 5.12360 5.23614 5.27522 5.32965 5.39924 5.43581 5.61799 6.19810 6.37735 6.69216 6.89337 7.08027 7.22487 8.83801 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.052548 B = 0.003039 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.722231 B = 9212.153217 C = 9524.877663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.019 3.981 3 H 0.077 0.923 4 C -0.530 4.530 5 H 0.044 0.956 6 C 0.019 3.981 7 N -0.942 5.942 8 Si 0.949 3.051 9 H -0.257 1.257 10 H -0.294 1.294 11 H -0.238 1.238 12 C 0.483 3.517 13 O -0.530 6.530 14 O -0.347 6.347 15 C 0.036 3.964 16 C 0.521 3.479 17 O -0.564 6.564 18 N -0.707 5.707 19 C 0.130 3.870 20 C -0.118 4.118 21 C -0.140 4.140 22 C -0.140 4.140 23 C -0.133 4.133 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.076 0.924 27 H 0.271 0.729 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.419 0.581 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.110 0.890 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.430 0.124 -28.282 28.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.001 4.001 3 H 0.095 0.905 4 C -0.567 4.567 5 H 0.062 0.938 6 C -0.179 4.179 7 N -0.581 5.581 8 Si 0.774 3.226 9 H -0.183 1.183 10 H -0.221 1.221 11 H -0.162 1.162 12 C 0.328 3.672 13 O -0.418 6.418 14 O -0.263 6.263 15 C -0.041 4.041 16 C 0.306 3.694 17 O -0.442 6.442 18 N -0.361 5.361 19 C 0.007 3.993 20 C -0.137 4.137 21 C -0.177 4.177 22 C -0.177 4.177 23 C -0.171 4.171 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.095 0.905 27 H 0.080 0.920 28 H 0.133 0.867 29 H 0.133 0.867 30 H 0.256 0.744 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.128 0.872 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.100 0.900 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.711 0.513 -28.086 28.143 hybrid contribution 0.162 -0.190 0.680 0.724 sum -1.548 0.324 -27.406 27.452 Atomic orbital electron populations 1.22010 0.93949 1.02208 1.01618 1.19086 0.95915 0.97665 0.87407 0.90549 1.20981 1.32682 1.13491 0.89576 0.93816 1.25836 0.97041 1.00269 0.94747 1.70018 1.46865 1.42404 0.98778 0.85846 0.79245 0.79378 0.78125 1.18306 1.22092 1.16192 1.24243 0.76360 0.82511 0.84131 1.90537 1.36916 1.27278 1.87098 1.86598 1.69831 1.55315 1.14572 1.22884 1.01733 0.96915 0.82544 1.20155 0.80002 0.83908 0.85334 1.90731 1.38589 1.27136 1.87755 1.45690 1.53666 1.32547 1.04235 1.21490 0.99172 0.96775 0.81863 1.22839 1.00994 0.97136 0.92726 1.23074 0.99790 0.98145 0.96721 1.22860 1.02371 0.96215 0.96279 1.22898 1.02324 0.97129 0.94699 0.92563 0.92925 0.90533 0.91988 0.86672 0.86689 0.74353 0.92094 0.92144 0.87153 0.90620 0.90534 0.91146 0.89277 0.90019 0.90475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.86 8.60 71.98 0.62 -5.24 16 2 C 0.02 0.89 2.33 -12.28 -0.03 0.87 16 3 H 0.08 3.50 7.20 -2.39 -0.02 3.49 16 4 C -0.53 -31.10 8.96 25.60 0.23 -30.88 16 5 H 0.04 2.95 7.00 -2.91 -0.02 2.93 16 6 C 0.02 1.12 5.45 84.66 0.46 1.58 16 7 N -0.94 -58.98 13.96 21.45 0.30 -58.68 16 8 Si 0.95 43.28 24.37 68.60 1.67 44.95 16 9 H -0.26 -10.99 6.87 99.48 0.68 -10.31 16 10 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 11 H -0.24 -9.87 6.53 99.48 0.65 -9.22 16 12 C 0.48 21.76 7.25 71.23 0.52 22.28 16 13 O -0.53 -26.36 15.21 21.97 0.33 -26.03 16 14 O -0.35 -13.28 9.66 -45.06 -0.44 -13.71 16 15 C 0.04 1.01 5.94 71.23 0.42 1.43 16 16 C 0.52 13.76 7.91 87.65 0.69 14.45 16 17 O -0.56 -20.23 16.50 15.77 0.26 -19.97 16 18 N -0.71 -11.88 5.56 -463.06 -2.57 -14.46 16 19 C 0.13 2.01 5.50 86.38 0.47 2.48 16 20 C -0.12 -1.12 3.75 -10.26 -0.04 -1.16 16 21 C -0.14 -1.28 7.65 31.21 0.24 -1.04 16 22 C -0.14 -1.10 8.09 31.21 0.25 -0.85 16 23 C -0.13 -1.16 7.64 31.12 0.24 -0.92 16 24 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 25 H 0.05 2.18 3.27 -2.39 -0.01 2.17 16 26 H 0.08 2.75 8.11 -2.39 -0.02 2.73 16 27 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 28 H 0.12 2.78 8.13 -2.39 -0.02 2.76 16 29 H 0.12 2.78 8.13 -2.39 -0.02 2.76 16 30 H 0.42 4.25 8.47 -92.71 -0.79 3.47 16 31 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.06 1.08 7.88 -2.39 -0.02 1.06 16 33 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.08 0.83 7.92 -2.39 -0.02 0.81 16 36 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 37 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.08 0.78 8.10 -2.39 -0.02 0.76 16 39 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -76.62 324.35 3.82 -72.79 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: 0.19 Total: 12.09 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: 4.08 Total: 3.01 kcal Atomic # 7 Polarization: -70.86 SS G_CDS: -2.27 Total: -73.13 kcal Atomic # 8 Polarization: -59.87 SS G_CDS: 0.16 Total: -59.71 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 1.67 Total: 44.95 kcal Total: -76.62 3.82 -72.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327179513.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.594 kcal (2) G-P(sol) polarization free energy of solvation -76.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds