Wall clock time and date at job start Mon Mar 30 2020 01:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47199 * 2 1 4 4 N 1.46503 * 109.46843 * 120.00011 * 2 1 3 5 5 C 1.46759 * 124.34996 * 120.00289 * 4 2 1 6 6 C 1.54834 * 105.49397 * 197.05738 * 5 4 2 7 7 C 1.54624 * 101.60535 * 334.56408 * 6 5 4 8 8 H 1.08995 * 110.48527 * 143.56795 * 7 6 5 9 9 O 1.45200 * 110.48653 * 266.08399 * 7 6 5 10 10 C 1.34224 * 116.99774 * 208.15770 * 9 7 6 11 11 O 1.20828 * 120.00400 * 0.02562 * 10 9 7 12 12 C 1.50704 * 119.99982 * 179.97438 * 10 9 7 13 13 H 1.08999 * 109.46699 * 60.00113 * 12 10 9 14 14 C 1.52995 * 109.47156 * 300.00296 * 12 10 9 15 15 C 1.50698 * 109.47293 * 180.02562 * 12 10 9 16 16 H 1.08000 * 119.99955 * 35.10011 * 15 12 10 17 17 C 1.37878 * 119.99801 * 215.10807 * 15 12 10 18 18 N 1.31519 * 119.99737 * 184.90825 * 17 15 12 19 19 Si 1.86799 * 120.00309 * 4.90442 * 17 15 12 20 20 H 1.48503 * 109.46803 * 84.82960 * 19 17 15 21 21 H 1.48500 * 109.47245 * 204.82695 * 19 17 15 22 22 H 1.48495 * 109.46988 * 324.83152 * 19 17 15 23 23 C 1.34420 * 124.35082 * 300.02174 * 4 2 1 24 24 O 1.21280 * 124.94031 * 359.53685 * 23 4 2 25 25 H 1.08997 * 109.47120 * 59.99704 * 1 2 3 26 26 H 1.08994 * 109.47171 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47028 * 300.00621 * 1 2 3 28 28 H 1.08995 * 109.46857 * 239.99596 * 2 1 3 29 29 H 1.09002 * 109.46937 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.47108 * 299.99672 * 3 2 1 31 31 H 1.08998 * 109.47056 * 60.00131 * 3 2 1 32 32 H 1.09010 * 110.24489 * 316.03402 * 5 4 2 33 33 H 1.08997 * 110.24798 * 77.94338 * 5 4 2 34 34 H 1.08999 * 111.07722 * 216.48307 * 6 5 4 35 35 H 1.09003 * 111.00952 * 92.61670 * 6 5 4 36 36 H 1.09000 * 109.47380 * 175.05825 * 14 12 10 37 37 H 1.09006 * 109.47173 * 295.05621 * 14 12 10 38 38 H 1.09000 * 109.47771 * 55.05769 * 14 12 10 39 39 H 0.97004 * 119.99801 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8656 -1.8887 1.1728 6 6 2.7600 -2.4977 2.5925 7 6 2.4031 -1.2538 3.4388 8 1 1.7070 -1.5205 4.2340 9 8 3.6038 -0.6562 3.9951 10 6 3.4721 0.0120 5.1518 11 8 2.3895 0.0944 5.6821 12 6 4.6747 0.6586 5.7896 13 1 5.0961 1.3957 5.1062 14 6 5.7250 -0.4104 6.0978 15 6 4.2601 1.3383 7.0691 16 1 3.4883 0.9029 7.6864 17 6 4.8661 2.5163 7.4515 18 7 4.5742 3.0589 8.6135 19 14 6.1016 3.3416 6.3194 20 1 5.3821 4.1922 5.3375 21 1 7.0233 4.1844 7.1228 22 1 6.8815 2.3042 5.5978 23 6 1.7476 -0.3086 2.4562 24 8 1.0761 0.6543 2.7610 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 3.1301 1.4425 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 2.4969 -2.5970 0.4307 33 1 3.8979 -1.6165 0.9533 34 1 3.7123 -2.9240 2.9079 35 1 1.9659 -3.2429 2.6400 36 1 6.6284 0.0667 6.4777 37 1 5.3343 -1.0980 6.8480 38 1 5.9606 -0.9615 5.1874 39 1 5.0008 3.8875 8.8827 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327503704.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:00 Heat of formation + Delta-G solvation = -121.560011 kcal Electronic energy + Delta-G solvation = -21565.238094 eV Core-core repulsion = 18280.118604 eV Total energy + Delta-G solvation = -3285.119490 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.84120 -39.22539 -36.44552 -35.98988 -34.33146 -33.79099 -31.37491 -29.74031 -27.34303 -27.30160 -25.31087 -23.54511 -22.58225 -21.75468 -19.94594 -18.87397 -17.39636 -16.95856 -16.69748 -15.69993 -15.62941 -15.37444 -15.06146 -14.19510 -13.93938 -13.72190 -13.66790 -13.27429 -13.12281 -12.69239 -12.55660 -12.33156 -12.17767 -12.01534 -11.78323 -11.60257 -11.37966 -11.32681 -11.15066 -11.04800 -10.78345 -10.77295 -10.33221 -9.87140 -9.31261 -9.23854 -9.20252 -8.77228 -8.63115 -6.14054 -4.15504 2.37594 2.83644 3.19561 3.25990 3.31403 3.33448 3.56817 4.26966 4.31841 4.33766 4.67782 4.80480 4.87545 4.98450 5.03926 5.19671 5.24990 5.42291 5.48919 5.54707 5.63525 5.64200 5.67981 5.76507 6.00079 6.07685 6.15173 6.18510 6.42099 6.47985 6.58506 6.78015 7.03670 7.06128 7.19702 7.49458 8.21891 8.38872 8.76942 8.99225 9.43482 10.98374 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024089 B = 0.005459 C = 0.005099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.089455 B = 5127.999518 C = 5489.880080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.154 3.846 3 C -0.171 4.171 4 N -0.616 5.616 5 C 0.105 3.895 6 C -0.129 4.129 7 C 0.049 3.951 8 H 0.113 0.887 9 O -0.348 6.348 10 C 0.458 3.542 11 O -0.485 6.485 12 C 0.028 3.972 13 H 0.064 0.936 14 C -0.134 4.134 15 C -0.506 4.506 16 H 0.089 0.911 17 C 0.077 3.923 18 N -0.887 5.887 19 Si 0.868 3.132 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.261 1.261 23 C 0.509 3.491 24 O -0.502 6.502 25 H 0.066 0.934 26 H 0.055 0.945 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.058 0.942 37 H 0.053 0.947 38 H 0.037 0.963 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.328 -11.501 -19.457 22.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.052 3.948 3 C -0.229 4.229 4 N -0.354 5.354 5 C -0.018 4.018 6 C -0.166 4.166 7 C -0.010 4.010 8 H 0.131 0.869 9 O -0.266 6.266 10 C 0.300 3.700 11 O -0.368 6.368 12 C 0.008 3.992 13 H 0.082 0.918 14 C -0.192 4.192 15 C -0.543 4.543 16 H 0.107 0.893 17 C -0.126 4.126 18 N -0.524 5.524 19 Si 0.695 3.305 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.186 1.186 23 C 0.294 3.706 24 O -0.375 6.375 25 H 0.085 0.915 26 H 0.074 0.926 27 H 0.091 0.909 28 H 0.105 0.895 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.124 0.876 35 H 0.114 0.886 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.056 0.944 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.047 -10.748 -19.041 21.961 hybrid contribution 0.487 0.554 -0.580 0.938 sum -1.560 -10.194 -19.621 22.166 Atomic orbital electron populations 1.22195 0.94771 1.02251 1.03425 1.20924 0.94399 0.93256 0.86185 1.22202 1.01507 0.95769 1.03372 1.48424 1.51316 1.29654 1.05983 1.22161 0.95422 0.86380 0.97824 1.22797 1.04906 0.95625 0.93283 1.23170 0.89195 0.92713 0.95912 0.86900 1.86768 1.34670 1.65242 1.39947 1.25393 0.93111 0.74725 0.76813 1.90576 1.28960 1.55350 1.61877 1.19188 0.88413 0.94891 0.96684 0.91829 1.21934 0.99002 0.98466 0.99792 1.20747 1.22826 1.07711 1.03000 0.89344 1.24985 0.96264 0.96271 0.95059 1.69871 1.42894 1.19650 1.19965 0.86990 0.81870 0.80259 0.81406 1.19828 1.20889 1.18585 1.21061 0.80321 0.85426 0.83778 1.90739 1.38208 1.27362 1.81179 0.91498 0.92551 0.90872 0.89509 0.92326 0.91532 0.90810 0.90268 0.90602 0.87645 0.88568 0.92287 0.92836 0.94397 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.76 9.20 37.16 0.34 -1.41 16 2 C 0.15 1.64 3.48 -67.93 -0.24 1.40 16 3 C -0.17 -2.01 9.20 37.16 0.34 -1.67 16 4 N -0.62 -7.76 2.83 -164.62 -0.47 -8.23 16 5 C 0.11 0.94 7.31 -2.93 -0.02 0.92 16 6 C -0.13 -1.26 6.95 -24.91 -0.17 -1.43 16 7 C 0.05 0.80 3.24 -26.74 -0.09 0.71 16 8 H 0.11 1.95 7.20 -51.93 -0.37 1.58 16 9 O -0.35 -6.70 9.76 -39.24 -0.38 -7.08 16 10 C 0.46 10.83 7.25 36.01 0.26 11.10 16 11 O -0.48 -13.05 15.00 -18.75 -0.28 -13.33 16 12 C 0.03 0.68 2.40 -92.93 -0.22 0.46 16 13 H 0.06 1.53 5.29 -51.93 -0.27 1.25 16 14 C -0.13 -2.73 9.14 37.15 0.34 -2.39 16 15 C -0.51 -14.68 8.36 -34.44 -0.29 -14.96 16 16 H 0.09 2.87 7.61 -52.49 -0.40 2.48 16 17 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 18 N -0.89 -27.30 13.96 55.43 0.77 -26.52 16 19 Si 0.87 21.15 26.99 -169.99 -4.59 16.56 16 20 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.26 -5.87 6.82 56.52 0.39 -5.48 16 23 C 0.51 8.75 7.10 -10.86 -0.08 8.68 16 24 O -0.50 -10.79 15.12 5.56 0.08 -10.71 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 1.00 6.80 -51.93 -0.35 0.65 16 28 H 0.09 0.67 8.07 -51.93 -0.42 0.25 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 1.14 6.77 -51.93 -0.35 0.78 16 32 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.11 0.91 8.11 -51.93 -0.42 0.49 16 35 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.04 0.65 8.00 -51.93 -0.42 0.23 16 39 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 323.21 15.07 4.87 4.87 Total: -1.00 -35.47 323.21 -5.87 -41.34 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -5.96 Total: -0.43 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: 0.08 Total: 3.54 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: 0.31 Total: -34.75 kcal Atomic # 8 Polarization: -30.54 SS G_CDS: -0.58 Total: -31.12 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.59 Total: 16.56 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -35.47 -5.87 -41.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327503704.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.219 kcal (2) G-P(sol) polarization free energy of solvation -35.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds