Wall clock time and date at job start Mon Mar 30 2020 01:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47199 * 2 1 4 4 N 1.46503 * 109.46843 * 120.00011 * 2 1 3 5 5 C 1.46759 * 124.34996 * 120.00289 * 4 2 1 6 6 C 1.54834 * 105.49397 * 197.05738 * 5 4 2 7 7 C 1.54624 * 101.60535 * 334.56408 * 6 5 4 8 8 H 1.08995 * 110.48527 * 143.56795 * 7 6 5 9 9 O 1.45200 * 110.48653 * 266.08399 * 7 6 5 10 10 C 1.34224 * 116.99774 * 208.15770 * 9 7 6 11 11 O 1.20828 * 120.00400 * 0.02562 * 10 9 7 12 12 C 1.50704 * 119.99982 * 179.97438 * 10 9 7 13 13 H 1.08999 * 109.46699 * 60.00113 * 12 10 9 14 14 C 1.52995 * 109.47156 * 300.00296 * 12 10 9 15 15 C 1.50698 * 109.47293 * 180.02562 * 12 10 9 16 16 H 1.08000 * 119.99955 * 35.10011 * 15 12 10 17 17 C 1.37878 * 119.99801 * 215.10807 * 15 12 10 18 18 N 1.31519 * 119.99737 * 184.90825 * 17 15 12 19 19 Si 1.86799 * 120.00309 * 4.90442 * 17 15 12 20 20 H 1.48503 * 109.46803 * 84.82960 * 19 17 15 21 21 H 1.48500 * 109.47245 * 204.82695 * 19 17 15 22 22 H 1.48495 * 109.46988 * 324.83152 * 19 17 15 23 23 C 1.34420 * 124.35082 * 300.02174 * 4 2 1 24 24 O 1.21280 * 124.94031 * 359.53685 * 23 4 2 25 25 H 1.08997 * 109.47120 * 59.99704 * 1 2 3 26 26 H 1.08994 * 109.47171 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47028 * 300.00621 * 1 2 3 28 28 H 1.08995 * 109.46857 * 239.99596 * 2 1 3 29 29 H 1.09002 * 109.46937 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.47108 * 299.99672 * 3 2 1 31 31 H 1.08998 * 109.47056 * 60.00131 * 3 2 1 32 32 H 1.09010 * 110.24489 * 316.03402 * 5 4 2 33 33 H 1.08997 * 110.24798 * 77.94338 * 5 4 2 34 34 H 1.08999 * 111.07722 * 216.48307 * 6 5 4 35 35 H 1.09003 * 111.00952 * 92.61670 * 6 5 4 36 36 H 1.09000 * 109.47380 * 175.05825 * 14 12 10 37 37 H 1.09006 * 109.47173 * 295.05621 * 14 12 10 38 38 H 1.09000 * 109.47771 * 55.05769 * 14 12 10 39 39 H 0.97004 * 119.99801 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8656 -1.8887 1.1728 6 6 2.7600 -2.4977 2.5925 7 6 2.4031 -1.2538 3.4388 8 1 1.7070 -1.5205 4.2340 9 8 3.6038 -0.6562 3.9951 10 6 3.4721 0.0120 5.1518 11 8 2.3895 0.0944 5.6821 12 6 4.6747 0.6586 5.7896 13 1 5.0961 1.3957 5.1062 14 6 5.7250 -0.4104 6.0978 15 6 4.2601 1.3383 7.0691 16 1 3.4883 0.9029 7.6864 17 6 4.8661 2.5163 7.4515 18 7 4.5742 3.0589 8.6135 19 14 6.1016 3.3416 6.3194 20 1 5.3821 4.1922 5.3375 21 1 7.0233 4.1844 7.1228 22 1 6.8815 2.3042 5.5978 23 6 1.7476 -0.3086 2.4562 24 8 1.0761 0.6543 2.7610 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 3.1301 1.4425 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 2.4969 -2.5970 0.4307 33 1 3.8979 -1.6165 0.9533 34 1 3.7123 -2.9240 2.9079 35 1 1.9659 -3.2429 2.6400 36 1 6.6284 0.0667 6.4777 37 1 5.3343 -1.0980 6.8480 38 1 5.9606 -0.9615 5.1874 39 1 5.0008 3.8875 8.8827 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327503704.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:59 Heat of formation + Delta-G solvation = -146.675580 kcal Electronic energy + Delta-G solvation = -21566.327187 eV Core-core repulsion = 18280.118604 eV Total energy + Delta-G solvation = -3286.208583 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.15545 -40.83191 -37.81888 -37.43703 -35.85426 -35.39006 -33.44822 -30.75504 -28.43059 -28.17848 -27.32342 -25.28461 -23.51529 -22.86459 -21.72286 -20.07340 -19.32554 -18.52969 -18.14995 -17.39778 -16.98649 -16.62122 -16.31208 -15.94091 -15.18961 -14.97012 -14.79482 -14.61361 -14.44019 -14.33655 -14.06147 -13.78251 -13.19473 -13.07976 -13.03746 -12.93633 -12.77916 -12.67848 -12.56253 -12.28936 -12.26939 -12.11350 -11.99632 -11.81194 -11.36179 -11.09586 -10.82557 -10.59251 -9.77421 -8.36758 -6.45724 0.98936 1.29473 1.34131 1.37533 1.45505 1.85866 2.09979 2.28220 3.00600 3.19472 3.38098 3.73590 3.92459 4.00893 4.06558 4.12139 4.25953 4.29503 4.46855 4.62126 4.64888 4.65686 4.77886 4.80670 4.82891 4.85226 4.93206 5.02660 5.10851 5.19117 5.25806 5.33212 5.46054 5.49868 5.65765 6.01599 6.16316 6.62514 6.93695 7.01513 7.17906 8.80406 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024089 B = 0.005459 C = 0.005099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.089455 B = 5127.999518 C = 5489.880080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.147 3.853 3 C -0.169 4.169 4 N -0.603 5.603 5 C 0.099 3.901 6 C -0.112 4.112 7 C 0.033 3.967 8 H 0.089 0.911 9 O -0.333 6.333 10 C 0.462 3.538 11 O -0.533 6.533 12 C 0.021 3.979 13 H 0.075 0.925 14 C -0.125 4.125 15 C -0.520 4.520 16 H 0.030 0.970 17 C 0.016 3.984 18 N -0.941 5.941 19 Si 0.938 3.062 20 H -0.275 1.275 21 H -0.274 1.274 22 H -0.220 1.220 23 C 0.492 3.508 24 O -0.564 6.564 25 H 0.090 0.910 26 H 0.069 0.931 27 H 0.028 0.972 28 H 0.137 0.863 29 H 0.059 0.941 30 H 0.092 0.908 31 H 0.025 0.975 32 H 0.127 0.873 33 H 0.091 0.909 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.066 0.934 37 H 0.046 0.954 38 H 0.079 0.921 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.144 -13.746 -23.899 27.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.047 3.953 3 C -0.227 4.227 4 N -0.338 5.338 5 C -0.022 4.022 6 C -0.149 4.149 7 C -0.026 4.026 8 H 0.107 0.893 9 O -0.250 6.250 10 C 0.306 3.694 11 O -0.420 6.420 12 C 0.002 3.998 13 H 0.093 0.907 14 C -0.183 4.183 15 C -0.557 4.557 16 H 0.048 0.952 17 C -0.182 4.182 18 N -0.579 5.579 19 Si 0.759 3.241 20 H -0.201 1.201 21 H -0.199 1.199 22 H -0.142 1.142 23 C 0.278 3.722 24 O -0.442 6.442 25 H 0.109 0.891 26 H 0.088 0.912 27 H 0.047 0.953 28 H 0.154 0.846 29 H 0.078 0.922 30 H 0.111 0.889 31 H 0.045 0.955 32 H 0.145 0.855 33 H 0.109 0.891 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.085 0.915 37 H 0.065 0.935 38 H 0.098 0.902 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.469 -13.072 -23.551 26.940 hybrid contribution -0.424 1.160 0.740 1.440 sum 0.045 -11.912 -22.811 25.734 Atomic orbital electron populations 1.22162 0.94892 1.02795 1.02412 1.21263 0.94444 0.92846 0.86785 1.22195 1.01459 0.96750 1.02327 1.48623 1.50142 1.30180 1.04867 1.22583 0.95840 0.85531 0.98211 1.22975 1.06976 0.92937 0.92052 1.23669 0.87778 0.95179 0.95973 0.89257 1.86663 1.36209 1.64416 1.37724 1.25146 0.92074 0.74509 0.77668 1.90567 1.30621 1.57269 1.63517 1.19200 0.89675 0.96343 0.94608 0.90729 1.21821 0.97473 0.97325 1.01662 1.20839 1.21635 1.08541 1.04733 0.95177 1.25986 0.98810 0.96719 0.96711 1.70037 1.44987 1.20503 1.22405 0.85884 0.79243 0.79835 0.79098 1.20099 1.19898 1.14217 1.21353 0.80145 0.84973 0.85722 1.90708 1.41062 1.30007 1.82425 0.89140 0.91191 0.95256 0.84567 0.92238 0.88909 0.95532 0.85542 0.89110 0.85573 0.85664 0.91533 0.93513 0.90197 0.91958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.14 9.20 71.98 0.66 -2.48 16 2 C 0.15 2.66 3.48 44.99 0.16 2.82 16 3 C -0.17 -3.75 9.20 71.98 0.66 -3.09 16 4 N -0.60 -13.52 2.83 -793.32 -2.25 -15.77 16 5 C 0.10 1.23 7.31 86.96 0.64 1.87 16 6 C -0.11 -1.73 6.95 31.77 0.22 -1.51 16 7 C 0.03 1.04 3.24 30.59 0.10 1.14 16 8 H 0.09 3.23 7.20 -2.39 -0.02 3.21 16 9 O -0.33 -12.53 9.76 -51.36 -0.50 -13.03 16 10 C 0.46 22.40 7.25 71.24 0.52 22.92 16 11 O -0.53 -30.61 15.00 21.96 0.33 -30.28 16 12 C 0.02 1.04 2.40 -12.29 -0.03 1.01 16 13 H 0.07 3.45 5.29 -2.39 -0.01 3.44 16 14 C -0.13 -4.83 9.14 71.98 0.66 -4.17 16 15 C -0.52 -31.61 8.36 25.60 0.21 -31.39 16 16 H 0.03 2.12 7.61 -2.91 -0.02 2.09 16 17 C 0.02 0.95 5.47 84.65 0.46 1.42 16 18 N -0.94 -60.53 13.96 21.45 0.30 -60.23 16 19 Si 0.94 43.35 26.99 68.60 1.85 45.21 16 20 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 21 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 22 H -0.22 -8.67 6.82 99.48 0.68 -7.99 16 23 C 0.49 17.03 7.10 87.90 0.62 17.65 16 24 O -0.56 -25.89 15.12 -3.03 -0.05 -25.94 16 25 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.03 0.82 6.80 -2.39 -0.02 0.80 16 28 H 0.14 1.24 8.07 -2.39 -0.02 1.22 16 29 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.03 0.84 6.77 -2.39 -0.02 0.82 16 32 H 0.13 0.54 8.14 -2.38 -0.02 0.52 16 33 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.13 1.51 8.11 -2.39 -0.02 1.49 16 35 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 38 H 0.08 2.41 8.00 -2.39 -0.02 2.39 16 39 H 0.27 16.10 8.31 -92.71 -0.77 15.33 16 Total: -1.00 -88.10 323.21 5.57 -82.53 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 1.00 Total: 11.32 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: 4.88 Total: 6.19 kcal Atomic # 7 Polarization: -74.05 SS G_CDS: -1.95 Total: -76.00 kcal Atomic # 8 Polarization: -69.03 SS G_CDS: -0.22 Total: -69.25 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 1.85 Total: 45.21 kcal Total: -88.10 5.57 -82.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327503704.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.149 kcal (2) G-P(sol) polarization free energy of solvation -88.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds