Wall clock time and date at job start Mon Mar 30 2020 01:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47016 * 2 1 4 4 N 1.46496 * 109.47217 * 120.00134 * 2 1 3 5 5 C 1.46770 * 124.34681 * 119.99856 * 4 2 1 6 6 C 1.54479 * 105.47002 * 197.03544 * 5 4 2 7 7 C 1.54628 * 101.76700 * 334.58863 * 6 5 4 8 8 H 1.09005 * 110.59585 * 266.06150 * 7 6 5 9 9 O 1.45202 * 110.48465 * 143.47800 * 7 6 5 10 10 C 1.34230 * 116.99836 * 153.77396 * 9 7 6 11 11 O 1.20833 * 119.99930 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00262 * 180.27336 * 10 9 7 13 13 H 1.09000 * 109.47461 * 59.71633 * 12 10 9 14 14 C 1.53002 * 109.46796 * 299.72392 * 12 10 9 15 15 C 1.50693 * 109.47486 * 179.72204 * 12 10 9 16 16 H 1.07997 * 120.00072 * 359.97438 * 15 12 10 17 17 C 1.37886 * 120.00075 * 179.97438 * 15 12 10 18 18 N 1.31514 * 119.99860 * 0.02562 * 17 15 12 19 19 Si 1.86802 * 119.99857 * 179.97438 * 17 15 12 20 20 H 1.48497 * 109.47273 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.46792 * 119.99967 * 19 17 15 22 22 H 1.48494 * 109.47042 * 240.00092 * 19 17 15 23 23 C 1.34415 * 124.35230 * 300.02275 * 4 2 1 24 24 O 1.21280 * 124.94179 * 359.61176 * 23 4 2 25 25 H 1.08998 * 109.47307 * 299.99773 * 1 2 3 26 26 H 1.09003 * 109.47293 * 59.99777 * 1 2 3 27 27 H 1.08996 * 109.47349 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46565 * 240.00268 * 2 1 3 29 29 H 1.09003 * 109.47272 * 300.00236 * 3 2 1 30 30 H 1.09000 * 109.47382 * 60.00153 * 3 2 1 31 31 H 1.09002 * 109.47084 * 180.02562 * 3 2 1 32 32 H 1.08999 * 110.24634 * 316.03629 * 5 4 2 33 33 H 1.08997 * 110.24403 * 78.04080 * 5 4 2 34 34 H 1.09002 * 110.97319 * 216.46360 * 6 5 4 35 35 H 1.09003 * 110.97004 * 92.70637 * 6 5 4 36 36 H 1.08993 * 109.47452 * 60.00035 * 14 12 10 37 37 H 1.09003 * 109.46969 * 179.97438 * 14 12 10 38 38 H 1.09008 * 109.46845 * 299.99275 * 14 12 10 39 39 H 0.96996 * 119.99508 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.8656 -1.8888 1.1726 6 6 2.7605 -2.4957 2.5893 7 6 2.4032 -1.2539 3.4385 8 1 3.3033 -0.8043 3.8580 9 8 1.4751 -1.6116 4.4963 10 6 1.4836 -0.8463 5.5991 11 8 2.2418 0.0912 5.6780 12 6 0.5522 -1.1603 6.7414 13 1 0.7572 -2.1648 7.1118 14 6 -0.8962 -1.0821 6.2547 15 6 0.7639 -0.1628 7.8509 16 1 1.4996 0.6200 7.7402 17 6 0.0183 -0.2496 9.0076 18 7 -0.8773 -1.2032 9.1426 19 14 0.2812 0.9866 10.3832 20 1 1.3384 1.9510 9.9867 21 1 -0.9851 1.7186 10.6395 22 1 0.6989 0.2730 11.6167 23 6 1.7477 -0.3086 2.4561 24 8 1.0751 0.6534 2.7610 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8932 -0.5138 -0.8900 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 2.4969 -2.5970 0.4305 33 1 3.8982 -1.6164 0.9546 34 1 3.7135 -2.9218 2.9029 35 1 1.9672 -3.2417 2.6362 36 1 -1.0494 -1.8036 5.4523 37 1 -1.5699 -1.3097 7.0809 38 1 -1.1013 -0.0776 5.8843 39 1 -1.4015 -1.2644 9.9564 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327503707.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:06 Heat of formation + Delta-G solvation = -123.841428 kcal Electronic energy + Delta-G solvation = -21474.075779 eV Core-core repulsion = 18188.857359 eV Total energy + Delta-G solvation = -3285.218420 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.78665 -39.14522 -36.37736 -35.93957 -34.37557 -33.82393 -30.62149 -29.61270 -27.31150 -27.28325 -25.14763 -23.41847 -22.50959 -21.75541 -19.98051 -18.83694 -17.14180 -17.02265 -16.16439 -15.87141 -15.59007 -15.09399 -14.89601 -14.17079 -14.00351 -13.71611 -13.63810 -13.24806 -12.96544 -12.68700 -12.28666 -12.25769 -12.14056 -11.91979 -11.63080 -11.37630 -11.32689 -11.01623 -10.97675 -10.81942 -10.65637 -10.64110 -10.24364 -10.00822 -9.20486 -9.07569 -8.97946 -8.77527 -8.40499 -6.06005 -4.10666 2.50539 2.84496 3.32508 3.37504 3.39795 3.46804 3.61742 4.29274 4.35947 4.45791 4.76041 4.80137 4.88311 4.98681 5.04120 5.22838 5.27523 5.33371 5.50451 5.54338 5.65763 5.67476 5.74618 5.78456 6.11067 6.17004 6.19622 6.59607 6.73734 6.93671 6.95111 7.06554 7.21544 7.50695 7.79863 7.99698 8.18961 8.26623 8.88579 8.98743 9.54433 11.01579 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.031138 B = 0.004611 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.006502 B = 6070.632344 C = 6259.634248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.155 3.845 3 C -0.170 4.170 4 N -0.621 5.621 5 C 0.106 3.894 6 C -0.126 4.126 7 C 0.050 3.950 8 H 0.114 0.886 9 O -0.343 6.343 10 C 0.466 3.534 11 O -0.506 6.506 12 C 0.060 3.940 13 H 0.064 0.936 14 C -0.132 4.132 15 C -0.509 4.509 16 H 0.076 0.924 17 C 0.061 3.939 18 N -0.893 5.893 19 Si 0.904 3.096 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.283 1.283 23 C 0.509 3.491 24 O -0.499 6.499 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.021 0.979 37 H 0.096 0.904 38 H 0.033 0.967 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.146 -4.096 -19.074 20.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.053 3.947 3 C -0.228 4.228 4 N -0.359 5.359 5 C -0.017 4.017 6 C -0.164 4.164 7 C -0.010 4.010 8 H 0.132 0.868 9 O -0.261 6.261 10 C 0.310 3.690 11 O -0.392 6.392 12 C 0.042 3.958 13 H 0.082 0.918 14 C -0.190 4.190 15 C -0.547 4.547 16 H 0.094 0.906 17 C -0.140 4.140 18 N -0.532 5.532 19 Si 0.732 3.268 20 H -0.195 1.195 21 H -0.209 1.209 22 H -0.209 1.209 23 C 0.294 3.706 24 O -0.372 6.372 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.104 0.896 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.040 0.960 37 H 0.114 0.886 38 H 0.052 0.948 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.866 -3.295 -18.820 19.987 hybrid contribution 0.260 0.653 0.593 0.920 sum 6.126 -2.642 -18.227 19.410 Atomic orbital electron populations 1.22196 0.94644 1.02502 1.03396 1.20913 0.94584 0.93066 0.86092 1.22202 1.01159 0.95950 1.03448 1.48356 1.51874 1.29655 1.05993 1.22084 0.95044 0.86677 0.97861 1.22725 1.04322 0.96898 0.92406 1.23129 0.94496 0.95870 0.87457 0.86820 1.86777 1.57468 1.55877 1.25966 1.25439 0.82648 0.79181 0.81721 1.90500 1.39689 1.28920 1.80055 1.18770 0.90076 1.00164 0.86832 0.91830 1.21719 0.98266 0.98680 1.00345 1.21182 1.21588 1.13373 0.98588 0.90572 1.24935 0.94805 0.95906 0.98374 1.69892 1.23594 1.32344 1.27338 0.86323 0.78204 0.81088 0.81225 1.19500 1.20891 1.20912 1.21050 0.80407 0.85386 0.83710 1.90737 1.37694 1.27751 1.81030 0.90773 0.91566 0.92399 0.89552 0.91531 0.90780 0.92566 0.89954 0.90888 0.88348 0.88348 0.95973 0.88586 0.94800 0.92799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.89 9.20 37.16 0.34 -1.55 16 2 C 0.16 1.63 3.47 -67.94 -0.24 1.39 16 3 C -0.17 -1.84 9.20 37.15 0.34 -1.50 16 4 N -0.62 -7.73 2.83 -164.85 -0.47 -8.19 16 5 C 0.11 0.91 7.30 -3.12 -0.02 0.88 16 6 C -0.13 -1.30 6.92 -25.10 -0.17 -1.48 16 7 C 0.05 0.83 3.22 -26.75 -0.09 0.74 16 8 H 0.11 1.94 7.26 -51.93 -0.38 1.56 16 9 O -0.34 -7.15 9.86 -42.16 -0.42 -7.56 16 10 C 0.47 11.58 7.24 36.00 0.26 11.84 16 11 O -0.51 -13.67 14.73 -18.76 -0.28 -13.95 16 12 C 0.06 1.61 2.74 -92.93 -0.25 1.35 16 13 H 0.06 1.70 8.14 -51.93 -0.42 1.28 16 14 C -0.13 -3.34 8.90 37.16 0.33 -3.01 16 15 C -0.51 -14.81 8.37 -34.44 -0.29 -15.10 16 16 H 0.08 2.32 6.76 -52.49 -0.35 1.97 16 17 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 18 N -0.89 -25.39 11.32 55.43 0.63 -24.76 16 19 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 20 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 C 0.51 8.87 7.10 -10.87 -0.08 8.79 16 24 O -0.50 -10.92 15.12 1.46 0.02 -10.90 16 25 H 0.07 1.10 6.80 -51.93 -0.35 0.74 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.09 0.64 8.07 -51.93 -0.42 0.22 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 1.07 6.78 -51.93 -0.35 0.71 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.10 1.01 8.11 -51.93 -0.42 0.59 16 36 H 0.02 0.49 8.12 -51.93 -0.42 0.07 16 37 H 0.10 2.56 6.07 -51.93 -0.32 2.24 16 38 H 0.03 0.86 8.14 -51.92 -0.42 0.44 16 39 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 323.22 15.07 4.87 4.87 Total: -1.00 -34.22 323.22 -6.57 -40.79 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -5.95 Total: -1.30 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: 0.04 Total: 3.99 kcal Atomic # 7 Polarization: -33.12 SS G_CDS: 0.16 Total: -32.96 kcal Atomic # 8 Polarization: -31.74 SS G_CDS: -0.67 Total: -32.41 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.22 -6.57 -40.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327503707.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.054 kcal (2) G-P(sol) polarization free energy of solvation -34.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds