Wall clock time and date at job start Mon Mar 30 2020 01:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47016 * 2 1 4 4 N 1.46496 * 109.47217 * 120.00134 * 2 1 3 5 5 C 1.46770 * 124.34681 * 119.99856 * 4 2 1 6 6 C 1.54479 * 105.47002 * 197.03544 * 5 4 2 7 7 C 1.54628 * 101.76700 * 334.58863 * 6 5 4 8 8 H 1.09005 * 110.59585 * 266.06150 * 7 6 5 9 9 O 1.45202 * 110.48465 * 143.47800 * 7 6 5 10 10 C 1.34230 * 116.99836 * 153.77396 * 9 7 6 11 11 O 1.20833 * 119.99930 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00262 * 180.27336 * 10 9 7 13 13 H 1.09000 * 109.47461 * 59.71633 * 12 10 9 14 14 C 1.53002 * 109.46796 * 299.72392 * 12 10 9 15 15 C 1.50693 * 109.47486 * 179.72204 * 12 10 9 16 16 H 1.07997 * 120.00072 * 359.97438 * 15 12 10 17 17 C 1.37886 * 120.00075 * 179.97438 * 15 12 10 18 18 N 1.31514 * 119.99860 * 0.02562 * 17 15 12 19 19 Si 1.86802 * 119.99857 * 179.97438 * 17 15 12 20 20 H 1.48497 * 109.47273 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.46792 * 119.99967 * 19 17 15 22 22 H 1.48494 * 109.47042 * 240.00092 * 19 17 15 23 23 C 1.34415 * 124.35230 * 300.02275 * 4 2 1 24 24 O 1.21280 * 124.94179 * 359.61176 * 23 4 2 25 25 H 1.08998 * 109.47307 * 299.99773 * 1 2 3 26 26 H 1.09003 * 109.47293 * 59.99777 * 1 2 3 27 27 H 1.08996 * 109.47349 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46565 * 240.00268 * 2 1 3 29 29 H 1.09003 * 109.47272 * 300.00236 * 3 2 1 30 30 H 1.09000 * 109.47382 * 60.00153 * 3 2 1 31 31 H 1.09002 * 109.47084 * 180.02562 * 3 2 1 32 32 H 1.08999 * 110.24634 * 316.03629 * 5 4 2 33 33 H 1.08997 * 110.24403 * 78.04080 * 5 4 2 34 34 H 1.09002 * 110.97319 * 216.46360 * 6 5 4 35 35 H 1.09003 * 110.97004 * 92.70637 * 6 5 4 36 36 H 1.08993 * 109.47452 * 60.00035 * 14 12 10 37 37 H 1.09003 * 109.46969 * 179.97438 * 14 12 10 38 38 H 1.09008 * 109.46845 * 299.99275 * 14 12 10 39 39 H 0.96996 * 119.99508 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.8656 -1.8888 1.1726 6 6 2.7605 -2.4957 2.5893 7 6 2.4032 -1.2539 3.4385 8 1 3.3033 -0.8043 3.8580 9 8 1.4751 -1.6116 4.4963 10 6 1.4836 -0.8463 5.5991 11 8 2.2418 0.0912 5.6780 12 6 0.5522 -1.1603 6.7414 13 1 0.7572 -2.1648 7.1118 14 6 -0.8962 -1.0821 6.2547 15 6 0.7639 -0.1628 7.8509 16 1 1.4996 0.6200 7.7402 17 6 0.0183 -0.2496 9.0076 18 7 -0.8773 -1.2032 9.1426 19 14 0.2812 0.9866 10.3832 20 1 1.3384 1.9510 9.9867 21 1 -0.9851 1.7186 10.6395 22 1 0.6989 0.2730 11.6167 23 6 1.7477 -0.3086 2.4561 24 8 1.0751 0.6534 2.7610 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8932 -0.5138 -0.8900 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 2.4969 -2.5970 0.4305 33 1 3.8982 -1.6164 0.9546 34 1 3.7135 -2.9218 2.9029 35 1 1.9672 -3.2417 2.6362 36 1 -1.0494 -1.8036 5.4523 37 1 -1.5699 -1.3097 7.0809 38 1 -1.1013 -0.0776 5.8843 39 1 -1.4015 -1.2644 9.9564 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327503707.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:05 Heat of formation + Delta-G solvation = -146.011327 kcal Electronic energy + Delta-G solvation = -21475.037138 eV Core-core repulsion = 18188.857359 eV Total energy + Delta-G solvation = -3286.179779 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.11710 -40.80854 -37.70570 -37.51429 -35.96828 -35.45932 -32.70982 -30.68672 -28.42149 -28.16707 -27.32992 -25.25652 -23.51707 -22.89844 -21.78756 -20.05875 -18.81471 -18.40484 -18.10781 -17.37843 -17.07506 -16.60403 -16.31911 -15.87437 -15.25650 -14.87136 -14.77834 -14.71183 -14.34433 -14.15912 -13.74518 -13.50168 -13.21704 -13.02876 -13.01721 -12.85689 -12.77537 -12.66918 -12.65424 -12.33405 -12.27724 -12.09684 -12.06318 -11.96636 -11.15394 -11.08666 -10.57164 -10.51860 -9.77453 -8.22945 -6.35965 1.13878 1.38387 1.40242 1.41577 1.54354 1.81578 2.11487 2.43058 3.06686 3.20525 3.41307 3.74567 3.92704 3.95649 4.06431 4.16492 4.27275 4.45939 4.61593 4.62636 4.66877 4.77096 4.81869 4.83902 4.85383 4.89890 4.92484 5.03951 5.20441 5.26899 5.32944 5.43051 5.64612 5.65889 5.82119 6.01373 6.05887 6.69759 6.96493 7.05780 7.32448 8.84146 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.031138 B = 0.004611 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.006502 B = 6070.632344 C = 6259.634248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.149 3.851 3 C -0.167 4.167 4 N -0.608 5.608 5 C 0.104 3.896 6 C -0.113 4.113 7 C 0.032 3.968 8 H 0.103 0.897 9 O -0.341 6.341 10 C 0.472 3.528 11 O -0.538 6.538 12 C 0.053 3.947 13 H 0.059 0.941 14 C -0.117 4.117 15 C -0.540 4.540 16 H 0.052 0.948 17 C 0.023 3.977 18 N -0.908 5.908 19 Si 0.965 3.035 20 H -0.279 1.279 21 H -0.273 1.273 22 H -0.267 1.267 23 C 0.493 3.507 24 O -0.561 6.561 25 H 0.026 0.974 26 H 0.091 0.909 27 H 0.063 0.937 28 H 0.137 0.863 29 H 0.091 0.909 30 H 0.027 0.973 31 H 0.064 0.936 32 H 0.123 0.877 33 H 0.103 0.897 34 H 0.130 0.870 35 H 0.103 0.897 36 H 0.045 0.955 37 H 0.082 0.918 38 H 0.017 0.983 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.119 -5.716 -21.290 23.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.048 3.952 3 C -0.225 4.225 4 N -0.344 5.344 5 C -0.017 4.017 6 C -0.150 4.150 7 C -0.027 4.027 8 H 0.121 0.879 9 O -0.258 6.258 10 C 0.317 3.683 11 O -0.426 6.426 12 C 0.034 3.966 13 H 0.077 0.923 14 C -0.175 4.175 15 C -0.578 4.578 16 H 0.070 0.930 17 C -0.177 4.177 18 N -0.546 5.546 19 Si 0.790 3.210 20 H -0.204 1.204 21 H -0.198 1.198 22 H -0.192 1.192 23 C 0.279 3.721 24 O -0.439 6.439 25 H 0.046 0.954 26 H 0.110 0.890 27 H 0.082 0.918 28 H 0.155 0.845 29 H 0.110 0.890 30 H 0.046 0.954 31 H 0.083 0.917 32 H 0.141 0.859 33 H 0.121 0.879 34 H 0.148 0.852 35 H 0.122 0.878 36 H 0.064 0.936 37 H 0.101 0.899 38 H 0.036 0.964 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.853 -4.985 -21.096 22.734 hybrid contribution -0.013 1.109 1.143 1.592 sum 6.840 -3.876 -19.953 21.446 Atomic orbital electron populations 1.22175 0.95454 1.02530 1.02328 1.21252 0.94067 0.93183 0.86678 1.22178 1.01599 0.96325 1.02394 1.48530 1.50811 1.30228 1.04790 1.22516 0.96209 0.85592 0.97361 1.22902 1.05982 0.94150 0.91962 1.23735 0.92878 0.99476 0.86604 0.87949 1.86677 1.58619 1.54624 1.25851 1.24958 0.81810 0.78906 0.82604 1.90472 1.40875 1.30231 1.81018 1.18691 0.91186 0.99254 0.87475 0.92309 1.21532 0.97282 0.98295 1.00381 1.21251 1.22123 1.13948 1.00439 0.92980 1.25646 0.94265 0.97567 1.00184 1.69953 1.23524 1.32997 1.28135 0.85400 0.78121 0.78807 0.78704 1.20438 1.19809 1.19191 1.21312 0.80204 0.84862 0.85702 1.90706 1.40674 1.30246 1.82304 0.95432 0.89034 0.91767 0.84496 0.89035 0.95369 0.91738 0.85877 0.87862 0.85177 0.87808 0.93587 0.89898 0.96422 0.92118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.51 9.20 71.98 0.66 -2.85 16 2 C 0.15 2.70 3.47 44.99 0.16 2.86 16 3 C -0.17 -3.43 9.20 71.98 0.66 -2.77 16 4 N -0.61 -13.74 2.83 -794.07 -2.25 -15.99 16 5 C 0.10 1.27 7.30 86.83 0.63 1.91 16 6 C -0.11 -1.96 6.92 31.65 0.22 -1.74 16 7 C 0.03 1.05 3.22 30.58 0.10 1.15 16 8 H 0.10 3.58 7.26 -2.38 -0.02 3.56 16 9 O -0.34 -14.49 9.86 -48.63 -0.48 -14.97 16 10 C 0.47 24.45 7.24 71.23 0.52 24.96 16 11 O -0.54 -30.60 14.73 21.94 0.32 -30.28 16 12 C 0.05 2.91 2.74 -12.29 -0.03 2.88 16 13 H 0.06 3.25 8.14 -2.39 -0.02 3.23 16 14 C -0.12 -6.09 8.90 71.98 0.64 -5.44 16 15 C -0.54 -32.57 8.37 25.60 0.21 -32.35 16 16 H 0.05 3.33 6.76 -2.91 -0.02 3.31 16 17 C 0.02 1.34 5.30 84.66 0.45 1.79 16 18 N -0.91 -51.92 11.32 21.45 0.24 -51.68 16 19 Si 0.97 45.71 29.54 68.60 2.03 47.74 16 20 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 21 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 22 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 23 C 0.49 17.44 7.10 87.90 0.62 18.06 16 24 O -0.56 -26.19 15.12 0.89 0.01 -26.17 16 25 H 0.03 0.84 6.80 -2.39 -0.02 0.82 16 26 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.14 1.23 8.07 -2.39 -0.02 1.21 16 29 H 0.09 1.37 8.14 -2.39 -0.02 1.36 16 30 H 0.03 0.84 6.78 -2.39 -0.02 0.82 16 31 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.10 1.76 8.11 -2.39 -0.02 1.74 16 36 H 0.05 2.10 8.12 -2.39 -0.02 2.08 16 37 H 0.08 4.51 6.07 -2.39 -0.01 4.50 16 38 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 39 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -80.64 323.22 5.75 -74.89 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: 1.03 Total: 8.02 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: 4.84 Total: 8.45 kcal Atomic # 7 Polarization: -65.67 SS G_CDS: -2.01 Total: -67.67 kcal Atomic # 8 Polarization: -71.27 SS G_CDS: -0.14 Total: -71.42 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -80.64 5.75 -74.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327503707.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.126 kcal (2) G-P(sol) polarization free energy of solvation -80.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds