Wall clock time and date at job start Mon Mar 30 2020 01:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 C 1.50698 * 109.47177 * 119.99481 * 2 1 3 13 13 O 1.20822 * 119.99840 * 120.00361 * 12 2 1 14 14 O 1.34228 * 120.00316 * 300.00594 * 12 2 1 15 15 C 1.45202 * 117.00107 * 180.02562 * 14 12 2 16 16 C 1.52999 * 109.46910 * 180.02562 * 15 14 12 17 17 C 1.53004 * 109.46990 * 180.02562 * 16 15 14 18 18 N 1.46500 * 109.47196 * 180.02562 * 17 16 15 19 19 C 1.46767 * 124.34524 * 269.72265 * 18 17 16 20 20 C 1.54663 * 105.38176 * 162.85389 * 19 18 17 21 21 C 1.54628 * 101.68567 * 25.76349 * 20 19 18 22 22 C 1.34420 * 124.35367 * 90.01744 * 18 17 16 23 23 O 1.21282 * 124.94312 * 0.43238 * 22 18 17 24 24 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 25 25 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 26 26 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.46935 * 299.99478 * 15 14 12 29 29 H 1.08998 * 109.46968 * 59.99840 * 15 14 12 30 30 H 1.09006 * 109.47239 * 299.99741 * 16 15 14 31 31 H 1.08995 * 109.47984 * 59.99571 * 16 15 14 32 32 H 1.09001 * 109.46759 * 299.99385 * 17 16 15 33 33 H 1.08990 * 109.47219 * 59.99425 * 17 16 15 34 34 H 1.08992 * 110.24609 * 281.97940 * 19 18 17 35 35 H 1.09003 * 110.24762 * 43.98289 * 19 18 17 36 36 H 1.09001 * 111.19117 * 267.59357 * 20 19 18 37 37 H 1.09001 * 110.82569 * 143.77411 * 20 19 18 38 38 H 1.09000 * 110.48829 * 216.30863 * 21 20 19 39 39 H 1.08999 * 110.59706 * 93.71709 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 6 2.0323 -0.7103 1.2305 13 8 2.7270 -1.6926 1.1197 14 8 1.7080 -0.2517 2.4496 15 6 2.2277 -0.9855 3.5897 16 6 1.7554 -0.3190 4.8834 17 6 2.3036 -1.0919 6.0848 18 7 1.8509 -0.4541 7.3235 19 6 2.5862 0.6035 8.0270 20 6 1.5573 1.2532 8.9816 21 6 0.5569 0.0945 9.1994 22 6 0.7116 -0.7662 7.9650 23 8 -0.0774 -1.6148 7.6065 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.7088 1.1611 -3.4845 28 1 1.8643 -2.0126 3.5570 29 1 3.3172 -0.9843 3.5566 30 1 2.1184 0.7083 4.9164 31 1 0.6660 -0.3205 4.9163 32 1 1.9409 -2.1193 6.0520 33 1 3.3930 -1.0899 6.0517 34 1 3.4127 0.1752 8.5939 35 1 2.9579 1.3415 7.3161 36 1 1.0688 2.1072 8.5122 37 1 2.0289 1.5431 9.9205 38 1 -0.4609 0.4778 9.2722 39 1 0.8152 -0.4720 10.0942 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330230333.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:26 Heat of formation + Delta-G solvation = -135.972758 kcal Electronic energy + Delta-G solvation = -20176.087328 eV Core-core repulsion = 16890.342854 eV Total energy + Delta-G solvation = -3285.744474 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.60453 -39.52544 -36.71471 -36.02991 -34.33108 -33.86406 -31.17009 -30.40202 -27.87319 -26.06890 -25.18732 -23.11685 -22.25859 -21.69457 -19.93277 -19.42797 -17.11544 -16.92573 -16.51155 -16.14834 -15.98834 -15.56117 -15.36534 -14.37803 -14.18265 -14.04176 -13.92492 -13.60459 -13.05310 -12.84537 -12.53714 -12.47649 -12.30021 -11.84639 -11.61392 -11.41677 -11.23605 -11.06772 -11.01942 -10.77053 -10.69119 -10.30929 -10.05124 -10.00599 -9.96944 -9.19021 -9.03428 -8.94270 -8.43975 -6.09719 -4.15091 2.34493 2.67946 3.30237 3.33558 3.36421 3.41457 3.58284 4.01806 4.10106 4.41925 4.43608 4.65691 4.78517 4.97251 5.05115 5.11356 5.19402 5.23440 5.28120 5.31672 5.39497 5.45889 5.57540 5.59888 5.95964 5.97882 6.24235 6.29905 6.68379 6.85999 6.89277 6.90543 7.24684 7.45436 7.75652 7.93763 7.95820 8.15524 8.86508 8.95031 9.50390 10.97754 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.045188 B = 0.002994 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.486023 B = 9350.444040 C = 9447.157139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.057 3.943 3 H 0.064 0.936 4 C -0.513 4.513 5 H 0.075 0.925 6 C 0.061 3.939 7 N -0.893 5.893 8 Si 0.905 3.095 9 H -0.279 1.279 10 H -0.272 1.272 11 H -0.285 1.285 12 C 0.465 3.535 13 O -0.518 6.518 14 O -0.366 6.366 15 C 0.066 3.934 16 C -0.134 4.134 17 C 0.129 3.871 18 N -0.619 5.619 19 C 0.099 3.901 20 C -0.132 4.132 21 C -0.156 4.156 22 C 0.514 3.486 23 O -0.530 6.530 24 H 0.023 0.977 25 H 0.096 0.904 26 H 0.031 0.969 27 H 0.263 0.737 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.592 3.092 23.107 23.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.039 3.961 3 H 0.081 0.919 4 C -0.551 4.551 5 H 0.094 0.906 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.732 3.268 9 H -0.205 1.205 10 H -0.197 1.197 11 H -0.211 1.211 12 C 0.310 3.690 13 O -0.405 6.405 14 O -0.284 6.284 15 C -0.009 4.009 16 C -0.173 4.173 17 C 0.007 3.993 18 N -0.354 5.354 19 C -0.024 4.024 20 C -0.170 4.170 21 C -0.196 4.196 22 C 0.301 3.699 23 O -0.406 6.406 24 H 0.042 0.958 25 H 0.114 0.886 26 H 0.050 0.950 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.109 0.891 38 H 0.120 0.880 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.336 2.402 22.705 22.951 hybrid contribution 0.493 -0.463 -0.786 1.037 sum 2.829 1.939 21.919 22.186 Atomic orbital electron populations 1.21733 0.95607 1.00084 1.01720 1.18755 0.94873 0.96936 0.85585 0.91864 1.21144 1.31859 1.13247 0.88809 0.90644 1.24944 0.94893 0.95043 0.99139 1.69884 1.36500 1.22886 1.23842 0.86373 0.78475 0.80179 0.81734 1.20535 1.19674 1.21118 1.25349 0.76520 0.83213 0.83952 1.90491 1.36454 1.26761 1.86814 1.86607 1.70483 1.55874 1.15464 1.22651 0.98580 0.95669 0.84001 1.21891 1.02843 1.00497 0.92061 1.21256 0.99560 0.97052 0.81465 1.48287 1.22910 1.39360 1.24803 1.22163 0.94951 0.89891 0.95354 1.22636 0.96366 0.97694 1.00313 1.22337 1.02399 0.97290 0.97556 1.20974 0.80596 0.83161 0.85122 1.90755 1.45230 1.34044 1.70530 0.95783 0.88555 0.94977 0.92699 0.91712 0.91786 0.90656 0.90441 0.89554 0.89845 0.90906 0.90031 0.89736 0.89136 0.87998 0.87876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.25 8.90 37.16 0.33 -2.92 16 2 C 0.06 1.49 2.74 -92.93 -0.25 1.24 16 3 H 0.06 1.68 8.14 -51.92 -0.42 1.26 16 4 C -0.51 -14.61 8.37 -34.44 -0.29 -14.90 16 5 H 0.08 2.24 6.76 -52.49 -0.35 1.88 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.10 11.32 55.43 0.63 -24.47 16 8 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 C 0.46 11.20 7.25 36.00 0.26 11.47 16 13 O -0.52 -13.47 15.21 -18.75 -0.29 -13.76 16 14 O -0.37 -7.48 10.12 -39.25 -0.40 -7.88 16 15 C 0.07 1.06 5.47 37.16 0.20 1.26 16 16 C -0.13 -1.69 5.92 -26.73 -0.16 -1.85 16 17 C 0.13 1.33 5.94 -4.04 -0.02 1.31 16 18 N -0.62 -5.93 2.93 -172.30 -0.51 -6.44 16 19 C 0.10 0.57 7.36 -3.02 -0.02 0.55 16 20 C -0.13 -0.58 7.19 -25.00 -0.18 -0.76 16 21 C -0.16 -1.03 6.86 -26.74 -0.18 -1.22 16 22 C 0.51 5.86 8.02 -10.86 -0.09 5.77 16 23 O -0.53 -8.55 17.59 5.56 0.10 -8.45 16 24 H 0.02 0.51 8.11 -51.93 -0.42 0.09 16 25 H 0.10 2.50 6.07 -51.93 -0.32 2.19 16 26 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.06 1.05 8.13 -51.93 -0.42 0.63 16 29 H 0.06 0.96 8.13 -51.93 -0.42 0.54 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.09 0.99 7.92 -51.93 -0.41 0.58 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 330.34 15.07 4.98 4.98 Total: -1.00 -33.78 330.34 -7.13 -40.92 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -6.13 Total: -3.10 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -0.50 Total: 1.54 kcal Atomic # 7 Polarization: -31.03 SS G_CDS: 0.12 Total: -30.91 kcal Atomic # 8 Polarization: -29.51 SS G_CDS: -0.58 Total: -30.09 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.78 -7.13 -40.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330230333.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.055 kcal (2) G-P(sol) polarization free energy of solvation -33.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds