Wall clock time and date at job start Mon Mar 30 2020 01:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 C 1.50698 * 109.47177 * 119.99481 * 2 1 3 13 13 O 1.20822 * 119.99840 * 120.00361 * 12 2 1 14 14 O 1.34228 * 120.00316 * 300.00594 * 12 2 1 15 15 C 1.45202 * 117.00107 * 180.02562 * 14 12 2 16 16 C 1.52999 * 109.46910 * 180.02562 * 15 14 12 17 17 C 1.53004 * 109.46990 * 180.02562 * 16 15 14 18 18 N 1.46500 * 109.47196 * 180.02562 * 17 16 15 19 19 C 1.46767 * 124.34524 * 269.72265 * 18 17 16 20 20 C 1.54663 * 105.38176 * 162.85389 * 19 18 17 21 21 C 1.54628 * 101.68567 * 25.76349 * 20 19 18 22 22 C 1.34420 * 124.35367 * 90.01744 * 18 17 16 23 23 O 1.21282 * 124.94312 * 0.43238 * 22 18 17 24 24 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 25 25 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 26 26 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.46935 * 299.99478 * 15 14 12 29 29 H 1.08998 * 109.46968 * 59.99840 * 15 14 12 30 30 H 1.09006 * 109.47239 * 299.99741 * 16 15 14 31 31 H 1.08995 * 109.47984 * 59.99571 * 16 15 14 32 32 H 1.09001 * 109.46759 * 299.99385 * 17 16 15 33 33 H 1.08990 * 109.47219 * 59.99425 * 17 16 15 34 34 H 1.08992 * 110.24609 * 281.97940 * 19 18 17 35 35 H 1.09003 * 110.24762 * 43.98289 * 19 18 17 36 36 H 1.09001 * 111.19117 * 267.59357 * 20 19 18 37 37 H 1.09001 * 110.82569 * 143.77411 * 20 19 18 38 38 H 1.09000 * 110.48829 * 216.30863 * 21 20 19 39 39 H 1.08999 * 110.59706 * 93.71709 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 6 2.0323 -0.7103 1.2305 13 8 2.7270 -1.6926 1.1197 14 8 1.7080 -0.2517 2.4496 15 6 2.2277 -0.9855 3.5897 16 6 1.7554 -0.3190 4.8834 17 6 2.3036 -1.0919 6.0848 18 7 1.8509 -0.4541 7.3235 19 6 2.5862 0.6035 8.0270 20 6 1.5573 1.2532 8.9816 21 6 0.5569 0.0945 9.1994 22 6 0.7116 -0.7662 7.9650 23 8 -0.0774 -1.6148 7.6065 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.7088 1.1611 -3.4845 28 1 1.8643 -2.0126 3.5570 29 1 3.3172 -0.9843 3.5566 30 1 2.1184 0.7083 4.9164 31 1 0.6660 -0.3205 4.9163 32 1 1.9409 -2.1193 6.0520 33 1 3.3930 -1.0899 6.0517 34 1 3.4127 0.1752 8.5939 35 1 2.9579 1.3415 7.3161 36 1 1.0688 2.1072 8.5122 37 1 2.0289 1.5431 9.9205 38 1 -0.4609 0.4778 9.2722 39 1 0.8152 -0.4720 10.0942 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330230333.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:25 Heat of formation + Delta-G solvation = -156.653978 kcal Electronic energy + Delta-G solvation = -20176.984133 eV Core-core repulsion = 16890.342854 eV Total energy + Delta-G solvation = -3286.641279 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.45853 -41.24517 -37.86068 -37.43787 -35.94476 -35.31189 -32.76150 -31.77308 -28.43962 -27.35342 -27.14264 -24.86260 -22.98438 -22.67875 -21.67392 -20.35160 -18.67657 -18.08126 -17.91947 -17.54965 -17.41862 -17.18970 -16.42510 -16.10839 -15.53406 -14.89468 -14.74437 -14.72995 -14.40280 -14.22017 -13.85241 -13.50950 -13.33994 -13.26957 -13.00796 -12.78938 -12.65503 -12.53760 -12.34587 -12.29289 -12.13924 -12.06807 -11.83129 -11.49300 -11.13705 -11.08385 -10.87047 -10.55129 -9.78221 -8.21743 -6.35303 1.39448 1.41865 1.42866 1.47387 1.54207 1.77751 2.15218 2.43725 3.08306 3.43065 3.64862 3.79734 3.86565 3.95956 4.09293 4.19259 4.21853 4.26866 4.44670 4.51358 4.65605 4.71613 4.72326 4.85836 4.87632 4.92252 4.93764 5.02442 5.11746 5.25148 5.36511 5.46769 5.54398 5.67217 5.85609 6.07918 6.12630 6.71203 7.01671 7.11501 7.33680 8.84924 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.045188 B = 0.002994 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.486023 B = 9350.444040 C = 9447.157139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.050 3.950 3 H 0.053 0.947 4 C -0.541 4.541 5 H 0.056 0.944 6 C 0.022 3.978 7 N -0.909 5.909 8 Si 0.965 3.035 9 H -0.271 1.271 10 H -0.276 1.276 11 H -0.273 1.273 12 C 0.472 3.528 13 O -0.543 6.543 14 O -0.365 6.365 15 C 0.060 3.940 16 C -0.119 4.119 17 C 0.130 3.870 18 N -0.619 5.619 19 C 0.092 3.908 20 C -0.121 4.121 21 C -0.149 4.149 22 C 0.496 3.504 23 O -0.592 6.592 24 H 0.047 0.953 25 H 0.079 0.921 26 H 0.026 0.974 27 H 0.269 0.731 28 H 0.058 0.942 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.113 0.887 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.121 0.879 38 H 0.104 0.896 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.676 4.150 24.462 25.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.031 3.969 3 H 0.071 0.929 4 C -0.579 4.579 5 H 0.075 0.925 6 C -0.178 4.178 7 N -0.548 5.548 8 Si 0.790 3.210 9 H -0.196 1.196 10 H -0.201 1.201 11 H -0.198 1.198 12 C 0.318 3.682 13 O -0.432 6.432 14 O -0.282 6.282 15 C -0.014 4.014 16 C -0.158 4.158 17 C 0.007 3.993 18 N -0.352 5.352 19 C -0.030 4.030 20 C -0.159 4.159 21 C -0.189 4.189 22 C 0.286 3.714 23 O -0.473 6.473 24 H 0.066 0.934 25 H 0.098 0.902 26 H 0.046 0.954 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.132 0.868 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.140 0.860 38 H 0.122 0.878 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.442 3.515 24.097 24.594 hybrid contribution 0.173 -0.755 -1.122 1.364 sum 3.615 2.760 22.974 23.420 Atomic orbital electron populations 1.21572 0.94582 0.99800 1.01989 1.18682 0.95748 0.96278 0.86202 0.92896 1.21263 1.32720 1.13347 0.90524 0.92547 1.25661 0.94831 0.95665 1.01616 1.69960 1.36552 1.23447 1.24813 0.85448 0.78457 0.78692 0.78423 1.19619 1.20124 1.19829 1.24854 0.75993 0.82558 0.84805 1.90470 1.37556 1.27741 1.87448 1.86548 1.70246 1.56032 1.15361 1.23024 0.99517 0.95395 0.83456 1.21795 1.01454 1.01377 0.91132 1.21191 1.01078 0.95839 0.81157 1.48483 1.22789 1.39748 1.24169 1.22510 0.95496 0.89161 0.95805 1.22688 0.95259 0.96496 1.01409 1.22384 1.03462 0.97417 0.95663 1.21916 0.80203 0.82808 0.86439 1.90711 1.47305 1.36849 1.72410 0.93448 0.90208 0.95438 0.92192 0.92381 0.90292 0.89118 0.92631 0.91358 0.86845 0.88766 0.88975 0.89577 0.86043 0.87769 0.86062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.94 8.90 71.98 0.64 -5.30 16 2 C 0.05 2.62 2.74 -12.29 -0.03 2.59 16 3 H 0.05 2.86 8.14 -2.38 -0.02 2.84 16 4 C -0.54 -31.28 8.37 25.60 0.21 -31.07 16 5 H 0.06 3.42 6.76 -2.91 -0.02 3.40 16 6 C 0.02 1.24 5.30 84.66 0.45 1.68 16 7 N -0.91 -51.02 11.32 21.45 0.24 -50.77 16 8 Si 0.97 44.27 29.54 68.60 2.03 46.30 16 9 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 11 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 12 C 0.47 22.95 7.25 71.24 0.52 23.47 16 13 O -0.54 -28.57 15.21 21.98 0.33 -28.24 16 14 O -0.36 -14.79 10.12 -51.39 -0.52 -15.31 16 15 C 0.06 1.89 5.47 71.98 0.39 2.29 16 16 C -0.12 -2.88 5.92 30.60 0.18 -2.70 16 17 C 0.13 2.54 5.94 86.38 0.51 3.05 16 18 N -0.62 -10.87 2.93 -817.61 -2.40 -13.27 16 19 C 0.09 0.74 7.36 86.90 0.64 1.38 16 20 C -0.12 -0.64 7.19 31.72 0.23 -0.41 16 21 C -0.15 -1.68 6.86 30.59 0.21 -1.47 16 22 C 0.50 11.10 8.02 87.90 0.71 11.81 16 23 O -0.59 -19.90 17.59 -3.04 -0.05 -19.96 16 24 H 0.05 2.03 8.11 -2.39 -0.02 2.01 16 25 H 0.08 4.17 6.07 -2.39 -0.01 4.16 16 26 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 28 H 0.06 1.90 8.13 -2.39 -0.02 1.88 16 29 H 0.08 2.26 8.13 -2.39 -0.02 2.24 16 30 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 31 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.07 1.59 7.92 -2.39 -0.02 1.57 16 33 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.09 0.42 8.14 -2.39 -0.02 0.41 16 35 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.12 -0.03 8.14 -2.39 -0.02 -0.05 16 38 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -74.62 330.34 5.31 -69.31 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: 1.03 Total: 6.62 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: 4.66 Total: 5.31 kcal Atomic # 7 Polarization: -61.89 SS G_CDS: -2.15 Total: -64.04 kcal Atomic # 8 Polarization: -63.26 SS G_CDS: -0.24 Total: -63.50 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -74.62 5.31 -69.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330230333.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.346 kcal (2) G-P(sol) polarization free energy of solvation -74.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds