Wall clock time and date at job start Mon Mar 30 2020 01:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 C 1.50698 * 109.47177 * 119.99481 * 2 1 3 13 13 O 1.21280 * 119.99901 * 120.00184 * 12 2 1 14 14 N 1.34774 * 120.00338 * 300.00305 * 12 2 1 15 15 C 1.46497 * 120.00288 * 179.97438 * 14 12 2 16 16 C 1.53000 * 109.47302 * 180.02562 * 15 14 12 17 17 C 1.53001 * 109.47355 * 180.02562 * 16 15 14 18 18 C 1.53000 * 109.47355 * 180.02562 * 17 16 15 19 19 H 1.09008 * 110.32541 * 305.70059 * 18 17 16 20 20 C 1.54486 * 110.36764 * 183.46010 * 18 17 16 21 21 C 1.54782 * 102.05078 * 225.87109 * 20 18 17 22 22 O 1.45835 * 104.48898 * 26.73685 * 21 20 18 23 23 C 1.34061 * 109.91194 * 329.45873 * 22 21 20 24 24 O 1.20821 * 125.10046 * 200.79668 * 23 22 21 25 25 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 26 26 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 27 27 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 0.97006 * 120.00251 * 0.02562 * 14 12 2 30 30 H 1.09002 * 109.47081 * 299.99975 * 15 14 12 31 31 H 1.09000 * 109.47237 * 60.00287 * 15 14 12 32 32 H 1.09002 * 109.46807 * 299.99867 * 16 15 14 33 33 H 1.08998 * 109.47285 * 60.00265 * 16 15 14 34 34 H 1.09002 * 109.46926 * 299.99636 * 17 16 15 35 35 H 1.08998 * 109.46837 * 59.99832 * 17 16 15 36 36 H 1.08998 * 110.87415 * 343.98033 * 20 18 17 37 37 H 1.09010 * 110.86983 * 107.65503 * 20 18 17 38 38 H 1.09008 * 110.36198 * 268.01050 * 21 20 18 39 39 H 1.08993 * 110.57449 * 145.57478 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 6 2.0323 -0.7103 1.2305 13 8 2.7296 -1.6963 1.1193 14 7 1.7067 -0.2498 2.4546 15 6 2.1946 -0.9406 3.6508 16 6 1.6842 -0.2197 4.9000 17 6 2.1942 -0.9408 6.1493 18 6 1.6833 -0.2202 7.3985 19 1 1.9529 0.8355 7.3636 20 6 2.2569 -0.8798 8.6722 21 6 1.0020 -0.9918 9.5714 22 8 -0.1133 -1.0613 8.6343 23 6 0.1830 -0.3768 7.5203 24 8 -0.6263 0.0503 6.7315 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.7088 1.1611 -3.4845 29 1 1.1487 0.5387 2.5436 30 1 1.8309 -1.9682 3.6507 31 1 3.2846 -0.9410 3.6510 32 1 2.0476 0.8080 4.9003 33 1 0.5942 -0.2197 4.8997 34 1 1.8312 -1.9686 6.1492 35 1 3.2842 -0.9404 6.1494 36 1 2.6639 -1.8661 8.4492 37 1 3.0115 -0.2425 9.1335 38 1 0.9109 -0.1107 10.2068 39 1 1.0456 -1.8955 10.1791 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332514379.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:24 Heat of formation + Delta-G solvation = -141.408379 kcal Electronic energy + Delta-G solvation = -20230.960210 eV Core-core repulsion = 16944.980030 eV Total energy + Delta-G solvation = -3285.980180 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.38762 -38.73951 -37.74610 -36.10819 -33.99912 -33.64754 -31.57254 -30.28141 -28.35964 -25.20134 -25.01731 -22.96063 -22.48269 -21.41980 -20.75526 -19.15028 -17.81974 -17.23745 -16.44920 -16.16511 -15.84092 -15.50453 -15.09161 -14.39601 -14.34808 -14.16004 -14.02334 -13.52330 -13.10922 -12.78972 -12.68887 -12.50596 -12.18640 -11.78774 -11.55163 -11.41778 -11.24818 -11.00197 -10.95134 -10.92225 -10.64614 -10.63136 -10.17554 -10.13191 -9.90464 -8.90963 -8.54341 -8.34654 -8.25807 -5.97567 -4.00425 1.78201 2.88660 3.37373 3.42691 3.49998 3.54158 3.78490 3.82483 3.92126 4.17906 4.34056 4.52572 4.64962 4.73556 4.90930 4.99397 5.15409 5.21506 5.32541 5.35455 5.39747 5.55841 5.64553 5.82543 6.13044 6.20248 6.39643 6.44132 6.70667 6.91576 7.00965 7.18395 7.20437 7.55270 7.82896 8.05723 8.22903 8.53711 9.08671 9.33115 9.64894 11.10141 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.048607 B = 0.003032 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.906841 B = 9233.049582 C = 9585.814075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.028 3.972 3 H 0.052 0.948 4 C -0.499 4.499 5 H 0.074 0.926 6 C 0.057 3.943 7 N -0.897 5.897 8 Si 0.900 3.100 9 H -0.281 1.281 10 H -0.273 1.273 11 H -0.287 1.287 12 C 0.518 3.482 13 O -0.549 6.549 14 N -0.747 5.747 15 C 0.122 3.878 16 C -0.142 4.142 17 C -0.098 4.098 18 C -0.153 4.153 19 H 0.117 0.883 20 C -0.154 4.154 21 C 0.053 3.947 22 O -0.349 6.349 23 C 0.483 3.517 24 O -0.443 6.443 25 H 0.013 0.987 26 H 0.093 0.907 27 H 0.030 0.970 28 H 0.260 0.740 29 H 0.396 0.604 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.054 -0.017 25.662 25.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.007 3.993 3 H 0.069 0.931 4 C -0.538 4.538 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.728 3.272 9 H -0.207 1.207 10 H -0.198 1.198 11 H -0.213 1.213 12 C 0.308 3.692 13 O -0.426 6.426 14 N -0.402 5.402 15 C -0.002 4.002 16 C -0.179 4.179 17 C -0.136 4.136 18 C -0.173 4.173 19 H 0.135 0.865 20 C -0.191 4.191 21 C -0.022 4.022 22 O -0.266 6.266 23 C 0.322 3.678 24 O -0.326 6.326 25 H 0.032 0.968 26 H 0.111 0.889 27 H 0.050 0.950 28 H 0.070 0.930 29 H 0.230 0.770 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.112 0.888 37 H 0.117 0.883 38 H 0.103 0.897 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.905 -0.554 25.095 25.173 hybrid contribution 0.167 0.048 -0.640 0.663 sum 2.071 -0.506 24.455 24.547 Atomic orbital electron populations 1.21739 0.96543 0.99812 1.00949 1.18868 0.94159 0.96802 0.89431 0.93063 1.21163 1.30811 1.12768 0.89059 0.90820 1.24961 0.95159 0.95117 0.99103 1.69880 1.37167 1.23202 1.23452 0.86453 0.78404 0.80258 0.82095 1.20705 1.19769 1.21315 1.21964 0.78419 0.84255 0.84559 1.90516 1.38175 1.26990 1.86878 1.46281 1.55489 1.32730 1.05661 1.21122 0.98718 0.96252 0.84126 1.21945 1.02978 0.99813 0.93201 1.21389 1.01617 0.99276 0.91330 1.22616 0.93232 1.03840 0.97608 0.86472 1.23120 0.98009 1.03386 0.94602 1.24170 0.82726 1.04418 0.90862 1.87049 1.43711 1.67060 1.28801 1.23140 0.90920 0.73851 0.79901 1.90736 1.56794 1.42999 1.42022 0.96843 0.88872 0.95043 0.93016 0.76993 0.92444 0.92361 0.91114 0.89829 0.90978 0.89837 0.88796 0.88331 0.89674 0.87114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 8.87 37.16 0.33 -2.86 16 2 C 0.03 0.74 2.64 -92.93 -0.25 0.49 16 3 H 0.05 1.36 8.14 -51.92 -0.42 0.94 16 4 C -0.50 -14.62 8.37 -34.44 -0.29 -14.91 16 5 H 0.07 2.27 6.75 -52.49 -0.35 1.92 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.90 -25.83 11.32 55.43 0.63 -25.20 16 8 Si 0.90 22.30 29.54 -169.99 -5.02 17.28 16 9 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 10 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 C 0.52 12.37 7.15 -10.99 -0.08 12.29 16 13 O -0.55 -14.90 15.46 5.56 0.09 -14.81 16 14 N -0.75 -13.74 5.45 -60.30 -0.33 -14.07 16 15 C 0.12 1.85 5.67 -4.04 -0.02 1.83 16 16 C -0.14 -1.60 5.13 -26.73 -0.14 -1.74 16 17 C -0.10 -0.81 4.55 -26.73 -0.12 -0.93 16 18 C -0.15 -1.05 3.01 -90.68 -0.27 -1.32 16 19 H 0.12 0.68 8.14 -51.92 -0.42 0.25 16 20 C -0.15 -0.56 6.81 -25.01 -0.17 -0.73 16 21 C 0.05 0.22 7.91 38.10 0.30 0.52 16 22 O -0.35 -3.32 11.05 -38.47 -0.43 -3.75 16 23 C 0.48 5.15 7.76 36.31 0.28 5.43 16 24 O -0.44 -6.51 16.09 -18.41 -0.30 -6.80 16 25 H 0.01 0.26 7.56 -51.93 -0.39 -0.13 16 26 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 27 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.40 6.46 7.89 -40.82 -0.32 6.13 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 1.10 6.20 -51.93 -0.32 0.78 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.09 0.30 7.81 -51.93 -0.41 -0.10 16 37 H 0.10 0.16 8.14 -51.92 -0.42 -0.26 16 38 H 0.09 0.22 8.14 -51.92 -0.42 -0.20 16 39 H 0.11 0.25 8.14 -51.93 -0.42 -0.18 16 LS Contribution 323.56 15.07 4.88 4.88 Total: -1.00 -35.39 323.56 -6.90 -42.29 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -5.90 Total: 0.60 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -0.52 Total: -0.40 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.30 Total: -39.28 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.64 Total: -25.37 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -35.39 -6.90 -42.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332514379.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.123 kcal (2) G-P(sol) polarization free energy of solvation -35.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds