Wall clock time and date at job start Mon Mar 30 2020 01:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 C 1.50698 * 109.47177 * 119.99481 * 2 1 3 13 13 O 1.21280 * 119.99901 * 120.00184 * 12 2 1 14 14 N 1.34774 * 120.00338 * 300.00305 * 12 2 1 15 15 C 1.46497 * 120.00288 * 179.97438 * 14 12 2 16 16 C 1.53000 * 109.47302 * 180.02562 * 15 14 12 17 17 C 1.53001 * 109.47355 * 180.02562 * 16 15 14 18 18 C 1.53000 * 109.47355 * 180.02562 * 17 16 15 19 19 H 1.09008 * 110.32541 * 305.70059 * 18 17 16 20 20 C 1.54486 * 110.36764 * 183.46010 * 18 17 16 21 21 C 1.54782 * 102.05078 * 225.87109 * 20 18 17 22 22 O 1.45835 * 104.48898 * 26.73685 * 21 20 18 23 23 C 1.34061 * 109.91194 * 329.45873 * 22 21 20 24 24 O 1.20821 * 125.10046 * 200.79668 * 23 22 21 25 25 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 26 26 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 27 27 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 0.97006 * 120.00251 * 0.02562 * 14 12 2 30 30 H 1.09002 * 109.47081 * 299.99975 * 15 14 12 31 31 H 1.09000 * 109.47237 * 60.00287 * 15 14 12 32 32 H 1.09002 * 109.46807 * 299.99867 * 16 15 14 33 33 H 1.08998 * 109.47285 * 60.00265 * 16 15 14 34 34 H 1.09002 * 109.46926 * 299.99636 * 17 16 15 35 35 H 1.08998 * 109.46837 * 59.99832 * 17 16 15 36 36 H 1.08998 * 110.87415 * 343.98033 * 20 18 17 37 37 H 1.09010 * 110.86983 * 107.65503 * 20 18 17 38 38 H 1.09008 * 110.36198 * 268.01050 * 21 20 18 39 39 H 1.08993 * 110.57449 * 145.57478 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 6 2.0323 -0.7103 1.2305 13 8 2.7296 -1.6963 1.1193 14 7 1.7067 -0.2498 2.4546 15 6 2.1946 -0.9406 3.6508 16 6 1.6842 -0.2197 4.9000 17 6 2.1942 -0.9408 6.1493 18 6 1.6833 -0.2202 7.3985 19 1 1.9529 0.8355 7.3636 20 6 2.2569 -0.8798 8.6722 21 6 1.0020 -0.9918 9.5714 22 8 -0.1133 -1.0613 8.6343 23 6 0.1830 -0.3768 7.5203 24 8 -0.6263 0.0503 6.7315 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.7088 1.1611 -3.4845 29 1 1.1487 0.5387 2.5436 30 1 1.8309 -1.9682 3.6507 31 1 3.2846 -0.9410 3.6510 32 1 2.0476 0.8080 4.9003 33 1 0.5942 -0.2197 4.8997 34 1 1.8312 -1.9686 6.1492 35 1 3.2842 -0.9404 6.1494 36 1 2.6639 -1.8661 8.4492 37 1 3.0115 -0.2425 9.1335 38 1 0.9109 -0.1107 10.2068 39 1 1.0456 -1.8955 10.1791 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332514379.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:23 Heat of formation + Delta-G solvation = -165.701872 kcal Electronic energy + Delta-G solvation = -20232.013655 eV Core-core repulsion = 16944.980030 eV Total energy + Delta-G solvation = -3287.033625 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.03286 -40.55231 -38.54920 -37.15318 -35.77386 -35.15927 -32.89576 -31.86494 -29.16914 -27.22112 -26.19165 -24.15076 -23.43659 -22.55659 -21.52508 -20.84997 -18.40686 -18.37526 -17.96193 -17.72260 -17.07800 -16.71221 -16.58139 -16.18814 -15.54691 -14.94504 -14.81772 -14.78659 -14.48629 -14.24392 -13.85256 -13.54625 -13.27378 -12.99468 -12.97172 -12.72901 -12.62599 -12.50960 -12.28719 -12.18530 -12.06867 -11.96447 -11.84300 -11.38154 -11.05200 -10.90677 -10.61176 -10.30843 -9.96093 -8.15591 -6.26442 1.03609 1.40420 1.40949 1.53340 1.92170 2.32719 2.36383 2.54291 2.99091 3.13686 3.42514 3.60734 3.96604 4.01968 4.10640 4.26758 4.34333 4.46202 4.52754 4.66362 4.71879 4.73836 4.74545 4.90164 4.94384 4.98563 5.01553 5.09607 5.22466 5.29261 5.48157 5.61501 5.74111 5.82635 5.92811 6.20297 6.45110 6.73246 6.85772 7.39043 7.53721 8.90497 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.048607 B = 0.003032 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.906841 B = 9233.049582 C = 9585.814075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.023 3.977 3 H 0.042 0.958 4 C -0.530 4.530 5 H 0.049 0.951 6 C 0.018 3.982 7 N -0.912 5.912 8 Si 0.958 3.042 9 H -0.272 1.272 10 H -0.278 1.278 11 H -0.274 1.274 12 C 0.519 3.481 13 O -0.589 6.589 14 N -0.729 5.729 15 C 0.120 3.880 16 C -0.131 4.131 17 C -0.095 4.095 18 C -0.145 4.145 19 H 0.134 0.866 20 C -0.142 4.142 21 C 0.044 3.956 22 O -0.375 6.375 23 C 0.476 3.524 24 O -0.499 6.499 25 H 0.049 0.951 26 H 0.072 0.928 27 H 0.021 0.979 28 H 0.265 0.735 29 H 0.408 0.592 30 H 0.045 0.955 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.108 0.892 36 H 0.101 0.899 37 H 0.129 0.871 38 H 0.104 0.896 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.150 0.305 27.499 27.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.002 3.998 3 H 0.060 0.940 4 C -0.569 4.569 5 H 0.067 0.933 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.784 3.216 9 H -0.198 1.198 10 H -0.204 1.204 11 H -0.199 1.199 12 C 0.308 3.692 13 O -0.469 6.469 14 N -0.382 5.382 15 C -0.003 4.003 16 C -0.169 4.169 17 C -0.133 4.133 18 C -0.165 4.165 19 H 0.152 0.848 20 C -0.179 4.179 21 C -0.029 4.029 22 O -0.292 6.292 23 C 0.318 3.682 24 O -0.385 6.385 25 H 0.067 0.933 26 H 0.091 0.909 27 H 0.040 0.960 28 H 0.074 0.926 29 H 0.244 0.756 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.104 0.896 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.126 0.874 36 H 0.120 0.880 37 H 0.147 0.853 38 H 0.122 0.878 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.994 -0.204 27.000 27.167 hybrid contribution -0.188 -0.051 -1.104 1.121 sum 2.806 -0.255 25.897 26.049 Atomic orbital electron populations 1.21564 0.95302 0.99301 1.01656 1.18810 0.95153 0.96022 0.89813 0.94016 1.21303 1.31640 1.12780 0.91158 0.93296 1.25644 0.95157 0.95785 1.01545 1.69958 1.37171 1.23686 1.24350 0.85554 0.78438 0.78732 0.78918 1.19790 1.20365 1.19897 1.21552 0.78241 0.83710 0.85720 1.90490 1.40120 1.28654 1.87629 1.46076 1.54315 1.32618 1.05155 1.21345 0.98956 0.95885 0.84115 1.21866 1.01744 1.00556 0.92688 1.21394 1.02970 0.98643 0.90304 1.22621 0.90312 1.05043 0.98483 0.84849 1.23178 0.98076 1.04142 0.92489 1.24604 0.81448 1.06517 0.90327 1.87006 1.46511 1.66450 1.29281 1.23847 0.92291 0.72640 0.79399 1.90693 1.58566 1.45444 1.43821 0.93254 0.90939 0.96024 0.92562 0.75579 0.93634 0.91944 0.89645 0.91706 0.91570 0.87385 0.88021 0.85303 0.87827 0.85015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.80 8.87 71.98 0.64 -5.16 16 2 C 0.02 1.22 2.64 -12.29 -0.03 1.19 16 3 H 0.04 2.25 8.14 -2.38 -0.02 2.23 16 4 C -0.53 -31.76 8.37 25.60 0.21 -31.55 16 5 H 0.05 3.12 6.75 -2.91 -0.02 3.10 16 6 C 0.02 1.01 5.30 84.66 0.45 1.46 16 7 N -0.91 -52.58 11.32 21.45 0.24 -52.34 16 8 Si 0.96 45.92 29.54 68.60 2.03 47.95 16 9 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 10 H -0.28 -13.51 7.11 99.48 0.71 -12.81 16 11 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 12 C 0.52 25.03 7.15 87.66 0.63 25.66 16 13 O -0.59 -32.66 15.46 -3.03 -0.05 -32.71 16 14 N -0.73 -26.43 5.45 -463.07 -2.52 -28.95 16 15 C 0.12 3.55 5.67 86.38 0.49 4.04 16 16 C -0.13 -2.77 5.13 30.59 0.16 -2.61 16 17 C -0.10 -1.34 4.55 30.59 0.14 -1.20 16 18 C -0.15 -1.60 3.01 -10.83 -0.03 -1.64 16 19 H 0.13 1.08 8.14 -2.38 -0.02 1.07 16 20 C -0.14 -0.48 6.81 31.71 0.22 -0.26 16 21 C 0.04 0.24 7.91 72.59 0.57 0.81 16 22 O -0.38 -6.77 11.05 -50.13 -0.55 -7.32 16 23 C 0.48 9.85 7.76 71.44 0.55 10.40 16 24 O -0.50 -15.01 16.09 21.65 0.35 -14.66 16 25 H 0.05 1.96 7.56 -2.39 -0.02 1.94 16 26 H 0.07 3.82 6.07 -2.39 -0.01 3.80 16 27 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 29 H 0.41 12.86 7.89 -92.70 -0.73 12.13 16 30 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.06 1.68 6.20 -2.39 -0.01 1.66 16 34 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.10 0.24 7.81 -2.39 -0.02 0.22 16 37 H 0.13 -0.26 8.14 -2.38 -0.02 -0.28 16 38 H 0.10 0.19 8.14 -2.38 -0.02 0.17 16 39 H 0.13 0.16 8.14 -2.39 -0.02 0.14 16 Total: -1.00 -79.49 323.56 3.81 -75.69 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: 0.32 Total: 11.21 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: 3.99 Total: 1.14 kcal Atomic # 7 Polarization: -79.01 SS G_CDS: -2.28 Total: -81.29 kcal Atomic # 8 Polarization: -54.44 SS G_CDS: -0.25 Total: -54.69 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -79.49 3.81 -75.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332514379.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.014 kcal (2) G-P(sol) polarization free energy of solvation -79.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds