Wall clock time and date at job start Mon Mar 30 2020 01:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46906 * 2 1 4 4 C 1.50697 * 109.47036 * 120.00693 * 2 1 3 5 5 H 1.08001 * 120.00018 * 114.36344 * 4 2 1 6 6 C 1.37878 * 119.99550 * 294.35816 * 4 2 1 7 7 N 1.31517 * 119.99939 * 156.77313 * 6 4 2 8 8 Si 1.86796 * 120.00278 * 336.49372 * 6 4 2 9 9 H 1.48501 * 109.47169 * 180.27569 * 8 6 4 10 10 H 1.48501 * 109.47257 * 300.27786 * 8 6 4 11 11 H 1.48500 * 109.47227 * 60.27733 * 8 6 4 12 12 N 1.46499 * 109.46784 * 240.00329 * 2 1 3 13 13 C 1.34781 * 120.00179 * 85.00283 * 12 2 1 14 14 O 1.21281 * 119.99748 * 359.97438 * 13 12 2 15 15 C 1.50705 * 120.00126 * 179.97438 * 13 12 2 16 16 H 1.08999 * 109.85589 * 304.30094 * 15 13 12 17 17 O 1.43348 * 109.86341 * 183.32103 * 15 13 12 18 18 C 1.44249 * 109.82802 * 240.57406 * 17 15 13 19 19 C 1.53987 * 104.54248 * 336.26816 * 18 17 15 20 20 H 1.09000 * 109.51091 * 281.44547 * 19 18 17 21 21 C 1.50951 * 112.61043 * 159.10016 * 19 18 17 22 22 O 1.42683 * 111.79390 * 293.72238 * 21 19 18 23 23 C 1.43258 * 112.52621 * 299.93534 * 22 21 19 24 24 C 1.52715 * 108.26824 * 65.59597 * 23 22 21 25 25 C 1.53119 * 110.61200 * 299.80420 * 24 23 22 26 26 H 1.09000 * 112.28053 * 283.02199 * 25 24 23 27 27 H 1.09002 * 109.47350 * 53.05829 * 1 2 3 28 28 H 1.09003 * 109.46983 * 173.05825 * 1 2 3 29 29 H 1.09000 * 109.47319 * 293.05926 * 1 2 3 30 30 H 0.97003 * 119.99587 * 354.65390 * 7 6 4 31 31 H 0.97000 * 119.99987 * 264.99618 * 12 2 1 32 32 H 1.09000 * 110.35652 * 217.53537 * 18 17 15 33 33 H 1.09001 * 110.48501 * 95.06701 * 18 17 15 34 34 H 1.09001 * 109.02243 * 173.12315 * 21 19 18 35 35 H 1.09002 * 109.01687 * 54.31464 * 21 19 18 36 36 H 1.09005 * 109.70387 * 305.90176 * 23 22 21 37 37 H 1.09004 * 109.70198 * 185.28844 * 23 22 21 38 38 H 1.08999 * 109.24853 * 179.50817 * 24 23 22 39 39 H 1.08999 * 109.24686 * 60.09415 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.5761 -1.6387 1.1338 6 6 1.7977 -0.1756 2.4793 7 7 1.8057 -0.9534 3.5398 8 14 1.4764 1.6550 2.6661 9 1 1.2618 1.9761 4.1000 10 1 2.6450 2.4171 2.1576 11 1 0.2667 2.0270 1.8892 12 7 2.0182 -0.6905 -1.1962 13 6 2.1470 -0.0181 -2.3572 14 8 1.8582 1.1585 -2.4117 15 6 2.6498 -0.7284 -3.5876 16 1 3.6162 -1.1881 -3.3808 17 8 2.7749 0.2026 -4.6705 18 6 1.9193 -0.1974 -5.7608 19 6 1.7183 -1.7107 -5.5595 20 1 2.5993 -2.2454 -5.9145 21 6 0.4888 -2.2316 -6.2636 22 8 -0.7096 -1.7036 -5.6972 23 6 -0.8572 -2.0406 -4.3127 24 6 0.2576 -1.3495 -3.5304 25 6 1.6305 -1.8157 -4.0226 26 1 1.8894 -2.8060 -3.6480 27 1 -0.3634 0.6176 -0.8214 28 1 -0.3633 -1.0202 -0.1242 29 1 -0.3634 0.4025 0.9455 30 1 1.8991 -1.9134 3.4365 31 1 2.2490 -1.6317 -1.1527 32 1 2.4064 -0.0022 -6.7162 33 1 0.9635 0.3238 -5.7067 34 1 0.4691 -3.3187 -6.1866 35 1 0.5372 -1.9523 -7.3161 36 1 -0.7794 -3.1206 -4.1869 37 1 -1.8267 -1.6969 -3.9521 38 1 0.1551 -1.5885 -2.4718 39 1 0.1751 -0.2709 -3.6642 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337045126.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:49 Heat of formation + Delta-G solvation = -131.013538 kcal Electronic energy + Delta-G solvation = -22105.918430 eV Core-core repulsion = 18820.389004 eV Total energy + Delta-G solvation = -3285.529426 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.15205 -38.71276 -37.43951 -34.91241 -33.39356 -32.40609 -31.95596 -30.05843 -28.31065 -25.63314 -24.91660 -23.70206 -23.32787 -20.61591 -19.75885 -19.46099 -17.83118 -17.17046 -16.63834 -16.39708 -15.88797 -15.39242 -15.27368 -14.75764 -14.22838 -13.90311 -13.61976 -13.29932 -13.09659 -12.82107 -12.64554 -12.33320 -12.18669 -12.07732 -11.85602 -11.49703 -11.34982 -11.06025 -10.77604 -10.51064 -10.41980 -10.14718 -10.09503 -9.85490 -9.66110 -9.16915 -8.86338 -8.31594 -8.17004 -6.61426 -4.22853 3.12432 3.39907 3.45987 3.54561 3.62341 3.70372 3.97581 4.09738 4.42815 4.45375 4.69200 4.76982 4.83965 5.07319 5.09568 5.12490 5.18721 5.27254 5.33343 5.38648 5.46534 5.52293 5.64942 5.71753 5.84255 5.97395 6.21905 6.36055 6.52270 6.65666 6.82640 6.92318 6.95777 7.26993 7.39778 7.65349 8.22333 8.45728 8.68806 8.96591 9.42954 10.76527 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.031305 B = 0.005371 C = 0.005091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.198540 B = 5211.477168 C = 5498.808383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.244 3.756 3 H 0.040 0.960 4 C -0.624 4.624 5 H 0.062 0.938 6 C 0.047 3.953 7 N -0.890 5.890 8 Si 1.032 2.968 9 H -0.283 1.283 10 H -0.280 1.280 11 H -0.274 1.274 12 N -0.702 5.702 13 C 0.497 3.503 14 O -0.539 6.539 15 C 0.063 3.937 16 H 0.099 0.901 17 O -0.351 6.351 18 C 0.058 3.942 19 C -0.155 4.155 20 H 0.094 0.906 21 C 0.073 3.927 22 O -0.376 6.376 23 C 0.062 3.938 24 C -0.167 4.167 25 C -0.103 4.103 26 H 0.105 0.895 27 H 0.029 0.971 28 H 0.042 0.958 29 H 0.058 0.942 30 H 0.270 0.730 31 H 0.391 0.609 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.054 0.946 35 H 0.096 0.904 36 H 0.054 0.946 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.135 -5.843 -18.213 19.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.141 3.859 3 H 0.057 0.943 4 C -0.662 4.662 5 H 0.080 0.920 6 C -0.161 4.161 7 N -0.522 5.522 8 Si 0.859 3.141 9 H -0.208 1.208 10 H -0.206 1.206 11 H -0.200 1.200 12 N -0.352 5.352 13 C 0.281 3.719 14 O -0.416 6.416 15 C 0.002 3.998 16 H 0.117 0.883 17 O -0.269 6.269 18 C -0.018 4.018 19 C -0.174 4.174 20 H 0.112 0.888 21 C -0.004 4.004 22 O -0.294 6.294 23 C -0.015 4.015 24 C -0.205 4.205 25 C -0.122 4.122 26 H 0.123 0.877 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.224 0.776 32 H 0.105 0.895 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.114 0.886 36 H 0.072 0.928 37 H 0.115 0.885 38 H 0.109 0.891 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.597 -3.493 -17.195 17.738 hybrid contribution 0.627 -2.097 -0.856 2.350 sum -1.970 -5.590 -18.051 18.999 Atomic orbital electron populations 1.22423 0.98963 0.99762 1.00183 1.18969 0.90437 0.94170 0.82315 0.94270 1.21998 1.42003 1.11184 0.90973 0.91973 1.25615 0.92932 1.05837 0.91726 1.70875 1.43104 1.06395 1.31809 0.84194 0.77819 0.75808 0.76238 1.20840 1.20641 1.20020 1.46293 1.65596 1.13564 1.09785 1.20596 0.78761 0.87843 0.84723 1.90666 1.50193 1.15840 1.84903 1.22978 0.99612 0.89294 0.87953 0.88296 1.88643 1.63940 1.49796 1.24520 1.23341 0.95471 0.92498 0.90519 1.22704 1.00458 0.98460 0.95783 0.88788 1.21823 0.83605 0.97422 0.97525 1.88136 1.39888 1.76786 1.24591 1.22610 0.99182 0.98574 0.81127 1.22455 0.93538 1.02719 1.01746 1.22646 0.95794 0.99040 0.94714 0.87660 0.95229 0.93855 0.92290 0.91972 0.77610 0.89462 0.91184 0.92779 0.88637 0.92763 0.88455 0.89118 0.89773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 9.21 37.16 0.34 -3.09 16 2 C 0.24 5.83 2.16 -69.08 -0.15 5.68 16 3 H 0.04 1.04 6.15 -51.93 -0.32 0.72 16 4 C -0.62 -16.63 8.95 -34.44 -0.31 -16.94 16 5 H 0.06 1.72 7.96 -52.49 -0.42 1.30 16 6 C 0.05 1.30 5.19 -17.82 -0.09 1.21 16 7 N -0.89 -26.10 13.70 55.43 0.76 -25.34 16 8 Si 1.03 25.13 26.45 -169.99 -4.50 20.63 16 9 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.27 -6.33 6.18 56.52 0.35 -5.98 16 12 N -0.70 -13.89 4.11 -54.93 -0.23 -14.12 16 13 C 0.50 9.72 4.96 -10.98 -0.05 9.67 16 14 O -0.54 -12.92 15.99 -14.06 -0.22 -13.15 16 15 C 0.06 0.95 3.73 -26.68 -0.10 0.85 16 16 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 17 O -0.35 -5.76 10.61 -54.85 -0.58 -6.34 16 18 C 0.06 0.72 6.79 37.67 0.26 0.97 16 19 C -0.16 -1.52 3.02 -90.46 -0.27 -1.80 16 20 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 21 C 0.07 0.65 6.17 36.13 0.22 0.87 16 22 O -0.38 -4.40 10.58 -35.23 -0.37 -4.77 16 23 C 0.06 0.68 6.82 37.01 0.25 0.94 16 24 C -0.17 -2.22 3.94 -26.82 -0.11 -2.32 16 25 C -0.10 -1.19 3.61 -88.68 -0.32 -1.51 16 26 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.06 1.36 5.52 -51.93 -0.29 1.07 16 30 H 0.27 7.81 8.73 -40.82 -0.36 7.45 16 31 H 0.39 6.74 8.53 -40.82 -0.35 6.40 16 32 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.97 7.49 -51.93 -0.39 0.58 16 34 H 0.05 0.40 8.13 -51.93 -0.42 -0.02 16 35 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.05 0.51 8.11 -51.93 -0.42 0.09 16 37 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.09 1.30 7.05 -51.93 -0.37 0.93 16 39 H 0.08 1.40 6.37 -51.93 -0.33 1.07 16 LS Contribution 305.52 15.07 4.60 4.60 Total: -1.00 -32.63 305.52 -6.75 -39.39 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -5.89 Total: 4.58 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -0.33 Total: -5.49 kcal Atomic # 7 Polarization: -39.99 SS G_CDS: 0.53 Total: -39.46 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -1.18 Total: -24.26 kcal Atomic # 14 Polarization: 25.13 SS G_CDS: -4.50 Total: 20.63 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.63 -6.75 -39.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337045126.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.626 kcal (2) G-P(sol) polarization free energy of solvation -32.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds