Wall clock time and date at job start Mon Mar 30 2020 01:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46906 * 2 1 4 4 C 1.50697 * 109.47036 * 120.00693 * 2 1 3 5 5 H 1.08001 * 120.00018 * 114.36344 * 4 2 1 6 6 C 1.37878 * 119.99550 * 294.35816 * 4 2 1 7 7 N 1.31517 * 119.99939 * 156.77313 * 6 4 2 8 8 Si 1.86796 * 120.00278 * 336.49372 * 6 4 2 9 9 H 1.48501 * 109.47169 * 180.27569 * 8 6 4 10 10 H 1.48501 * 109.47257 * 300.27786 * 8 6 4 11 11 H 1.48500 * 109.47227 * 60.27733 * 8 6 4 12 12 N 1.46499 * 109.46784 * 240.00329 * 2 1 3 13 13 C 1.34781 * 120.00179 * 85.00283 * 12 2 1 14 14 O 1.21281 * 119.99748 * 359.97438 * 13 12 2 15 15 C 1.50705 * 120.00126 * 179.97438 * 13 12 2 16 16 H 1.08999 * 109.85589 * 304.30094 * 15 13 12 17 17 O 1.43348 * 109.86341 * 183.32103 * 15 13 12 18 18 C 1.44249 * 109.82802 * 240.57406 * 17 15 13 19 19 C 1.53987 * 104.54248 * 336.26816 * 18 17 15 20 20 H 1.09000 * 109.51091 * 281.44547 * 19 18 17 21 21 C 1.50951 * 112.61043 * 159.10016 * 19 18 17 22 22 O 1.42683 * 111.79390 * 293.72238 * 21 19 18 23 23 C 1.43258 * 112.52621 * 299.93534 * 22 21 19 24 24 C 1.52715 * 108.26824 * 65.59597 * 23 22 21 25 25 C 1.53119 * 110.61200 * 299.80420 * 24 23 22 26 26 H 1.09000 * 112.28053 * 283.02199 * 25 24 23 27 27 H 1.09002 * 109.47350 * 53.05829 * 1 2 3 28 28 H 1.09003 * 109.46983 * 173.05825 * 1 2 3 29 29 H 1.09000 * 109.47319 * 293.05926 * 1 2 3 30 30 H 0.97003 * 119.99587 * 354.65390 * 7 6 4 31 31 H 0.97000 * 119.99987 * 264.99618 * 12 2 1 32 32 H 1.09000 * 110.35652 * 217.53537 * 18 17 15 33 33 H 1.09001 * 110.48501 * 95.06701 * 18 17 15 34 34 H 1.09001 * 109.02243 * 173.12315 * 21 19 18 35 35 H 1.09002 * 109.01687 * 54.31464 * 21 19 18 36 36 H 1.09005 * 109.70387 * 305.90176 * 23 22 21 37 37 H 1.09004 * 109.70198 * 185.28844 * 23 22 21 38 38 H 1.08999 * 109.24853 * 179.50817 * 24 23 22 39 39 H 1.08999 * 109.24686 * 60.09415 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.5761 -1.6387 1.1338 6 6 1.7977 -0.1756 2.4793 7 7 1.8057 -0.9534 3.5398 8 14 1.4764 1.6550 2.6661 9 1 1.2618 1.9761 4.1000 10 1 2.6450 2.4171 2.1576 11 1 0.2667 2.0270 1.8892 12 7 2.0182 -0.6905 -1.1962 13 6 2.1470 -0.0181 -2.3572 14 8 1.8582 1.1585 -2.4117 15 6 2.6498 -0.7284 -3.5876 16 1 3.6162 -1.1881 -3.3808 17 8 2.7749 0.2026 -4.6705 18 6 1.9193 -0.1974 -5.7608 19 6 1.7183 -1.7107 -5.5595 20 1 2.5993 -2.2454 -5.9145 21 6 0.4888 -2.2316 -6.2636 22 8 -0.7096 -1.7036 -5.6972 23 6 -0.8572 -2.0406 -4.3127 24 6 0.2576 -1.3495 -3.5304 25 6 1.6305 -1.8157 -4.0226 26 1 1.8894 -2.8060 -3.6480 27 1 -0.3634 0.6176 -0.8214 28 1 -0.3633 -1.0202 -0.1242 29 1 -0.3634 0.4025 0.9455 30 1 1.8991 -1.9134 3.4365 31 1 2.2490 -1.6317 -1.1527 32 1 2.4064 -0.0022 -6.7162 33 1 0.9635 0.3238 -5.7067 34 1 0.4691 -3.3187 -6.1866 35 1 0.5372 -1.9523 -7.3161 36 1 -0.7794 -3.1206 -4.1869 37 1 -1.8267 -1.6969 -3.9521 38 1 0.1551 -1.5885 -2.4718 39 1 0.1751 -0.2709 -3.6642 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337045126.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:49 Heat of formation + Delta-G solvation = -155.282295 kcal Electronic energy + Delta-G solvation = -22106.970803 eV Core-core repulsion = 18820.389004 eV Total energy + Delta-G solvation = -3286.581798 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.23639 -40.09730 -38.52760 -36.76524 -34.75810 -34.05400 -32.92385 -31.68129 -29.55419 -26.92790 -26.46354 -24.82210 -24.41185 -22.31947 -21.20201 -20.56713 -19.74891 -18.30939 -17.87049 -17.45015 -17.11683 -16.72360 -16.22975 -15.92627 -15.78335 -15.35011 -15.05954 -14.72130 -14.53715 -14.29162 -14.08512 -13.78215 -13.60431 -13.35819 -13.06859 -13.01311 -12.64778 -12.47374 -12.09256 -12.02081 -11.78306 -11.72108 -11.29243 -11.22955 -11.15799 -10.57981 -10.47120 -10.31949 -9.91666 -8.81185 -6.42903 1.43998 1.47118 1.64499 1.68256 2.19757 2.39923 2.85901 2.93759 2.96385 3.15482 3.54457 3.60887 3.91361 3.96579 4.02611 4.17511 4.29245 4.34160 4.47557 4.49021 4.58396 4.65388 4.67598 4.69033 4.73226 4.79745 4.82914 4.96272 5.06875 5.09784 5.20568 5.40260 5.60047 5.64553 5.81407 6.02042 6.17797 6.53091 6.81178 7.24984 7.40723 8.56184 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.031305 B = 0.005371 C = 0.005091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.198540 B = 5211.477168 C = 5498.808383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.247 3.753 3 H 0.013 0.987 4 C -0.618 4.618 5 H 0.047 0.953 6 C 0.007 3.993 7 N -0.917 5.917 8 Si 1.062 2.938 9 H -0.278 1.278 10 H -0.278 1.278 11 H -0.258 1.258 12 N -0.696 5.696 13 C 0.495 3.505 14 O -0.590 6.590 15 C 0.065 3.935 16 H 0.125 0.875 17 O -0.382 6.382 18 C 0.049 3.951 19 C -0.141 4.141 20 H 0.126 0.874 21 C 0.067 3.933 22 O -0.397 6.397 23 C 0.065 3.935 24 C -0.164 4.164 25 C -0.096 4.096 26 H 0.141 0.859 27 H 0.031 0.969 28 H 0.058 0.942 29 H 0.048 0.952 30 H 0.263 0.737 31 H 0.405 0.595 32 H 0.113 0.887 33 H 0.044 0.956 34 H 0.080 0.920 35 H 0.114 0.886 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.016 -7.536 -20.332 21.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.142 3.858 3 H 0.031 0.969 4 C -0.656 4.656 5 H 0.065 0.935 6 C -0.196 4.196 7 N -0.551 5.551 8 Si 0.885 3.115 9 H -0.204 1.204 10 H -0.204 1.204 11 H -0.182 1.182 12 N -0.347 5.347 13 C 0.282 3.718 14 O -0.471 6.471 15 C 0.004 3.996 16 H 0.143 0.857 17 O -0.300 6.300 18 C -0.026 4.026 19 C -0.160 4.160 20 H 0.144 0.856 21 C -0.009 4.009 22 O -0.315 6.315 23 C -0.011 4.011 24 C -0.201 4.201 25 C -0.114 4.114 26 H 0.158 0.842 27 H 0.050 0.950 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.241 0.759 32 H 0.131 0.869 33 H 0.062 0.938 34 H 0.098 0.902 35 H 0.132 0.868 36 H 0.099 0.901 37 H 0.111 0.889 38 H 0.095 0.905 39 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.474 -5.224 -19.341 20.186 hybrid contribution 0.625 -1.567 -0.265 1.708 sum -1.849 -6.792 -19.606 20.831 Atomic orbital electron populations 1.22265 0.97590 1.00740 0.99712 1.18680 0.91389 0.92748 0.82960 0.96908 1.22130 1.40966 1.10451 0.92036 0.93454 1.26563 0.92782 1.08323 0.91914 1.70955 1.45474 1.06121 1.32565 0.83783 0.78525 0.72552 0.76636 1.20378 1.20435 1.18249 1.46062 1.65521 1.14113 1.08980 1.21504 0.77303 0.87325 0.85697 1.90633 1.52350 1.18322 1.85746 1.23070 1.01546 0.89404 0.85563 0.85748 1.88617 1.64587 1.51228 1.25604 1.23552 0.94181 0.94478 0.90428 1.22725 1.02443 0.96561 0.94256 0.85559 1.22094 0.81898 0.98806 0.98104 1.88121 1.41382 1.77496 1.24548 1.22592 0.98039 0.99682 0.80787 1.22356 0.95947 1.00375 1.01465 1.22789 0.93224 0.99155 0.96240 0.84161 0.94957 0.92313 0.93262 0.92782 0.75939 0.86873 0.93759 0.90156 0.86769 0.90123 0.88868 0.90548 0.93994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.38 9.21 71.98 0.66 -5.72 16 2 C 0.25 11.80 2.16 44.24 0.10 11.90 16 3 H 0.01 0.70 6.15 -2.39 -0.01 0.68 16 4 C -0.62 -33.07 8.95 25.60 0.23 -32.84 16 5 H 0.05 2.63 7.96 -2.91 -0.02 2.61 16 6 C 0.01 0.39 5.19 84.65 0.44 0.83 16 7 N -0.92 -54.26 13.70 21.45 0.29 -53.97 16 8 Si 1.06 50.89 26.45 68.60 1.81 52.71 16 9 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 10 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 11 H -0.26 -11.57 6.18 99.48 0.61 -10.96 16 12 N -0.70 -27.22 4.11 -446.09 -1.83 -29.06 16 13 C 0.49 19.32 4.96 87.66 0.43 19.76 16 14 O -0.59 -29.07 15.99 15.73 0.25 -28.82 16 15 C 0.07 1.85 3.73 30.63 0.11 1.96 16 16 H 0.13 2.90 8.14 -2.39 -0.02 2.88 16 17 O -0.38 -12.13 10.61 -130.22 -1.38 -13.51 16 18 C 0.05 1.13 6.79 72.32 0.49 1.62 16 19 C -0.14 -2.22 3.02 -10.69 -0.03 -2.25 16 20 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 21 C 0.07 0.91 6.17 71.32 0.44 1.35 16 22 O -0.40 -8.35 10.58 -148.98 -1.58 -9.93 16 23 C 0.07 1.31 6.82 71.89 0.49 1.80 16 24 C -0.16 -4.15 3.94 30.54 0.12 -4.03 16 25 C -0.10 -1.92 3.61 -9.54 -0.03 -1.95 16 26 H 0.14 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.06 2.36 8.14 -2.39 -0.02 2.35 16 29 H 0.05 2.24 5.52 -2.39 -0.01 2.23 16 30 H 0.26 15.42 8.73 -92.71 -0.81 14.61 16 31 H 0.41 13.45 8.53 -92.71 -0.79 12.66 16 32 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.04 1.22 7.49 -2.39 -0.02 1.21 16 34 H 0.08 0.74 8.13 -2.39 -0.02 0.72 16 35 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.08 1.20 8.11 -2.38 -0.02 1.19 16 37 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.08 2.11 7.05 -2.39 -0.02 2.10 16 39 H 0.04 1.42 6.37 -2.39 -0.02 1.40 16 Total: -1.00 -73.03 305.52 1.15 -71.88 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 0.13 Total: 18.25 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: 3.45 Total: -7.55 kcal Atomic # 7 Polarization: -81.49 SS G_CDS: -1.54 Total: -83.03 kcal Atomic # 8 Polarization: -49.55 SS G_CDS: -2.71 Total: -52.25 kcal Atomic # 14 Polarization: 50.89 SS G_CDS: 1.81 Total: 52.71 kcal Total: -73.03 1.15 -71.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337045126.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.405 kcal (2) G-P(sol) polarization free energy of solvation -73.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds