Wall clock time and date at job start Mon Mar 30 2020 01:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21272 * 119.99836 * 2 1 4 4 N 1.34776 * 119.99593 * 179.97438 * 2 1 3 5 5 C 1.47018 * 125.65214 * 359.97438 * 4 2 1 6 6 C 1.54325 * 107.40412 * 181.01647 * 5 4 2 7 7 C 1.55552 * 102.75696 * 22.23822 * 6 5 4 8 8 H 1.09000 * 111.02984 * 82.56372 * 7 6 5 9 9 C 1.53002 * 110.99828 * 206.38810 * 7 6 5 10 10 O 1.45200 * 109.47161 * 178.66787 * 9 7 6 11 11 C 1.34228 * 116.99875 * 179.97438 * 10 9 7 12 12 O 1.20823 * 120.00233 * 359.97438 * 11 10 9 13 13 C 1.50711 * 119.99751 * 179.97438 * 11 10 9 14 14 H 1.08992 * 109.46958 * 300.00300 * 13 11 10 15 15 C 1.52996 * 109.46755 * 60.00272 * 13 11 10 16 16 C 1.50705 * 109.46857 * 180.02562 * 13 11 10 17 17 H 1.07995 * 120.00063 * 0.02562 * 16 13 11 18 18 C 1.37871 * 119.99677 * 180.02562 * 16 13 11 19 19 N 1.31513 * 120.00160 * 0.02562 * 18 16 13 20 20 Si 1.86798 * 119.99974 * 180.02562 * 18 16 13 21 21 H 1.48497 * 109.47168 * 90.00056 * 20 18 16 22 22 H 1.48504 * 109.47192 * 210.00268 * 20 18 16 23 23 H 1.48501 * 109.47136 * 330.00380 * 20 18 16 24 24 C 1.47430 * 125.64252 * 180.02562 * 4 2 1 25 25 H 1.09002 * 109.47095 * 240.00009 * 1 2 3 26 26 H 1.08998 * 109.47095 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47359 * 120.00274 * 1 2 3 28 28 H 1.09002 * 109.88241 * 300.51175 * 5 4 2 29 29 H 1.09000 * 109.88049 * 61.52304 * 5 4 2 30 30 H 1.08993 * 110.72531 * 140.63023 * 6 5 4 31 31 H 1.09000 * 110.72094 * 263.91129 * 6 5 4 32 32 H 1.09006 * 109.47322 * 298.66561 * 9 7 6 33 33 H 1.08997 * 109.47368 * 58.66668 * 9 7 6 34 34 H 1.09001 * 109.47202 * 60.00357 * 15 13 11 35 35 H 1.08998 * 109.46836 * 179.97438 * 15 13 11 36 36 H 1.08995 * 109.47259 * 299.99879 * 15 13 11 37 37 H 0.96999 * 120.00045 * 179.97438 * 19 18 16 38 38 H 1.08997 * 110.36526 * 274.67677 * 24 4 2 39 39 H 1.08995 * 110.36492 * 37.00099 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.5746 -2.5066 0.0017 6 6 2.7257 -3.5342 0.0280 7 6 3.9079 -2.7108 0.6144 8 1 3.8582 -2.6754 1.7026 9 6 5.2523 -3.2730 0.1478 10 8 6.3294 -2.4626 0.6876 11 6 7.5823 -2.8249 0.3705 12 8 7.7728 -3.7876 -0.3343 13 6 8.7516 -2.0309 0.8937 14 1 8.6781 -1.0017 0.5424 15 6 8.7372 -2.0499 2.4235 16 6 10.0363 -2.6409 0.3952 17 1 10.0089 -3.5157 -0.2374 18 6 11.2467 -2.0821 0.7469 19 7 11.2801 -1.0171 1.5178 20 14 12.8391 -2.8378 0.1286 21 1 13.2111 -2.2166 -1.1680 22 1 13.9185 -2.5981 1.1200 23 1 12.6538 -4.2993 -0.0579 24 6 3.6480 -1.3123 0.0011 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3633 1.0276 0.0005 27 1 -0.3634 -0.5139 -0.8900 28 1 0.9480 -2.6292 0.8851 29 1 0.9762 -2.6434 -0.8990 30 1 2.4784 -4.3738 0.6776 31 1 2.9573 -3.8798 -0.9795 32 1 5.3586 -4.2993 0.4992 33 1 5.2951 -3.2556 -0.9412 34 1 8.8107 -3.0791 2.7748 35 1 9.5831 -1.4760 2.8019 36 1 7.8080 -1.6084 2.7836 37 1 12.1316 -0.6242 1.7655 38 1 4.0340 -1.2669 -1.0172 39 1 4.1055 -0.5374 0.6161 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344688384.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:44 Heat of formation + Delta-G solvation = -134.232569 kcal Electronic energy + Delta-G solvation = -20562.510774 eV Core-core repulsion = 17276.841760 eV Total energy + Delta-G solvation = -3285.669014 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.26384 -39.49795 -37.71050 -35.70392 -33.87887 -32.77528 -30.63652 -30.07731 -29.47672 -25.93440 -25.19738 -23.58646 -22.61072 -20.62438 -19.86606 -19.39407 -17.21793 -16.97456 -16.49672 -16.00962 -15.91100 -15.47194 -15.26190 -14.63816 -14.18151 -13.90320 -13.46179 -13.14925 -12.84414 -12.81803 -12.66918 -12.49356 -12.26792 -11.90187 -11.68239 -11.61469 -11.13707 -11.04390 -10.88818 -10.77861 -10.70242 -10.32434 -10.08234 -10.05278 -9.99103 -9.12100 -9.04055 -8.85120 -8.44364 -6.09736 -4.15453 2.46949 2.79158 3.29218 3.31678 3.34051 3.37366 3.46798 4.19355 4.25975 4.41481 4.58311 4.65486 4.91436 4.97401 5.06022 5.09128 5.15315 5.23520 5.28189 5.43624 5.52643 5.56588 5.60266 5.70434 5.86711 5.98313 6.08145 6.21695 6.67299 6.87502 6.88883 7.20388 7.32576 7.44596 7.74984 7.95155 7.99093 8.14885 8.84114 8.94024 9.50163 10.97650 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.034639 B = 0.003563 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.148445 B = 7856.388061 C = 8313.936686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.522 3.478 3 O -0.543 6.543 4 N -0.623 5.623 5 C 0.103 3.897 6 C -0.125 4.125 7 C -0.099 4.099 8 H 0.096 0.904 9 C 0.074 3.926 10 O -0.365 6.365 11 C 0.466 3.534 12 O -0.518 6.518 13 C 0.057 3.943 14 H 0.064 0.936 15 C -0.133 4.133 16 C -0.513 4.513 17 H 0.075 0.925 18 C 0.062 3.938 19 N -0.892 5.892 20 Si 0.905 3.095 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.272 1.272 24 C 0.111 3.889 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.030 0.970 35 H 0.096 0.904 36 H 0.023 0.977 37 H 0.263 0.737 38 H 0.071 0.929 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.562 -3.481 -0.955 21.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.312 3.688 3 O -0.420 6.420 4 N -0.358 5.358 5 C -0.020 4.020 6 C -0.163 4.163 7 C -0.118 4.118 8 H 0.115 0.885 9 C -0.002 4.002 10 O -0.283 6.283 11 C 0.311 3.689 12 O -0.405 6.405 13 C 0.038 3.962 14 H 0.082 0.918 15 C -0.191 4.191 16 C -0.551 4.551 17 H 0.093 0.907 18 C -0.140 4.140 19 N -0.530 5.530 20 Si 0.732 3.268 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.197 1.197 24 C -0.011 4.011 25 H 0.105 0.895 26 H 0.110 0.890 27 H 0.104 0.896 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.050 0.950 35 H 0.114 0.886 36 H 0.042 0.958 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -21.137 -3.011 -1.095 21.378 hybrid contribution 0.759 -0.619 -0.415 1.063 sum -20.378 -3.630 -1.510 20.754 Atomic orbital electron populations 1.21895 0.91490 1.05366 1.04037 1.20492 0.90344 0.82080 0.75899 1.90756 1.70824 1.30600 1.49825 1.48610 1.07813 1.05752 1.73669 1.22024 0.96287 0.81874 1.01842 1.22724 0.93507 0.97435 1.02672 1.22443 0.92901 0.94643 1.01817 0.88522 1.22706 0.84276 0.94616 0.98553 1.86631 1.16254 1.55547 1.69899 1.25356 0.82862 0.83891 0.76795 1.90494 1.85437 1.28382 1.36221 1.18766 0.86825 0.95912 0.94703 0.91787 1.21727 1.01217 1.00456 0.95691 1.21132 0.88712 1.14014 1.31277 0.90661 1.24938 0.99296 0.94878 0.94884 1.69879 1.26186 1.21211 1.35737 0.86380 0.82192 0.79741 0.78487 1.20523 1.21127 1.19696 1.22296 0.79725 0.97527 1.01565 0.89511 0.88982 0.89557 0.91118 0.91135 0.89283 0.89921 0.91222 0.91550 0.95034 0.88572 0.95751 0.92675 0.91116 0.89364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.17 9.51 36.01 0.34 -0.82 16 2 C 0.52 6.33 7.96 -10.98 -0.09 6.24 16 3 O -0.54 -9.30 17.34 5.56 0.10 -9.20 16 4 N -0.62 -6.78 3.33 -170.53 -0.57 -7.35 16 5 C 0.10 0.71 6.47 -3.07 -0.02 0.69 16 6 C -0.13 -0.92 6.45 -24.68 -0.16 -1.08 16 7 C -0.10 -1.09 3.34 -88.26 -0.29 -1.39 16 8 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 9 C 0.07 1.07 4.91 37.16 0.18 1.25 16 10 O -0.37 -7.04 9.98 -39.25 -0.39 -7.44 16 11 C 0.47 10.87 7.25 36.01 0.26 11.13 16 12 O -0.52 -13.06 15.21 -18.75 -0.29 -13.34 16 13 C 0.06 1.45 2.74 -92.92 -0.25 1.20 16 14 H 0.06 1.70 8.14 -51.93 -0.42 1.28 16 15 C -0.13 -3.17 8.90 37.16 0.33 -2.84 16 16 C -0.51 -14.48 8.37 -34.44 -0.29 -14.77 16 17 H 0.08 2.21 6.76 -52.49 -0.35 1.85 16 18 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 19 N -0.89 -25.03 11.32 55.43 0.63 -24.40 16 20 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 24 C 0.11 1.42 6.25 -2.53 -0.02 1.40 16 25 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.09 0.64 8.12 -51.93 -0.42 0.22 16 27 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.58 8.05 -51.93 -0.42 0.16 16 32 H 0.07 0.98 8.13 -51.93 -0.42 0.56 16 33 H 0.07 0.96 8.09 -51.93 -0.42 0.54 16 34 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.10 2.47 6.07 -51.93 -0.32 2.16 16 36 H 0.02 0.50 8.11 -51.93 -0.42 0.08 16 37 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 38 H 0.07 0.94 8.00 -51.93 -0.42 0.52 16 39 H 0.09 1.33 8.04 -51.93 -0.42 0.92 16 LS Contribution 328.31 15.07 4.95 4.95 Total: -1.00 -33.44 328.31 -6.81 -40.25 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -6.12 Total: -2.64 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -0.10 Total: 2.62 kcal Atomic # 7 Polarization: -31.81 SS G_CDS: 0.06 Total: -31.75 kcal Atomic # 8 Polarization: -29.40 SS G_CDS: -0.58 Total: -29.98 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.44 -6.81 -40.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344688384.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.979 kcal (2) G-P(sol) polarization free energy of solvation -33.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds