Wall clock time and date at job start Mon Mar 30 2020 01:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21272 * 119.99836 * 2 1 4 4 N 1.34776 * 119.99593 * 179.97438 * 2 1 3 5 5 C 1.47018 * 125.65214 * 359.97438 * 4 2 1 6 6 C 1.54325 * 107.40412 * 181.01647 * 5 4 2 7 7 C 1.55552 * 102.75696 * 22.23822 * 6 5 4 8 8 H 1.09000 * 111.02984 * 82.56372 * 7 6 5 9 9 C 1.53002 * 110.99828 * 206.38810 * 7 6 5 10 10 O 1.45200 * 109.47161 * 178.66787 * 9 7 6 11 11 C 1.34228 * 116.99875 * 179.97438 * 10 9 7 12 12 O 1.20823 * 120.00233 * 359.97438 * 11 10 9 13 13 C 1.50711 * 119.99751 * 179.97438 * 11 10 9 14 14 H 1.08992 * 109.46958 * 300.00300 * 13 11 10 15 15 C 1.52996 * 109.46755 * 60.00272 * 13 11 10 16 16 C 1.50705 * 109.46857 * 180.02562 * 13 11 10 17 17 H 1.07995 * 120.00063 * 0.02562 * 16 13 11 18 18 C 1.37871 * 119.99677 * 180.02562 * 16 13 11 19 19 N 1.31513 * 120.00160 * 0.02562 * 18 16 13 20 20 Si 1.86798 * 119.99974 * 180.02562 * 18 16 13 21 21 H 1.48497 * 109.47168 * 90.00056 * 20 18 16 22 22 H 1.48504 * 109.47192 * 210.00268 * 20 18 16 23 23 H 1.48501 * 109.47136 * 330.00380 * 20 18 16 24 24 C 1.47430 * 125.64252 * 180.02562 * 4 2 1 25 25 H 1.09002 * 109.47095 * 240.00009 * 1 2 3 26 26 H 1.08998 * 109.47095 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47359 * 120.00274 * 1 2 3 28 28 H 1.09002 * 109.88241 * 300.51175 * 5 4 2 29 29 H 1.09000 * 109.88049 * 61.52304 * 5 4 2 30 30 H 1.08993 * 110.72531 * 140.63023 * 6 5 4 31 31 H 1.09000 * 110.72094 * 263.91129 * 6 5 4 32 32 H 1.09006 * 109.47322 * 298.66561 * 9 7 6 33 33 H 1.08997 * 109.47368 * 58.66668 * 9 7 6 34 34 H 1.09001 * 109.47202 * 60.00357 * 15 13 11 35 35 H 1.08998 * 109.46836 * 179.97438 * 15 13 11 36 36 H 1.08995 * 109.47259 * 299.99879 * 15 13 11 37 37 H 0.96999 * 120.00045 * 179.97438 * 19 18 16 38 38 H 1.08997 * 110.36526 * 274.67677 * 24 4 2 39 39 H 1.08995 * 110.36492 * 37.00099 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.5746 -2.5066 0.0017 6 6 2.7257 -3.5342 0.0280 7 6 3.9079 -2.7108 0.6144 8 1 3.8582 -2.6754 1.7026 9 6 5.2523 -3.2730 0.1478 10 8 6.3294 -2.4626 0.6876 11 6 7.5823 -2.8249 0.3705 12 8 7.7728 -3.7876 -0.3343 13 6 8.7516 -2.0309 0.8937 14 1 8.6781 -1.0017 0.5424 15 6 8.7372 -2.0499 2.4235 16 6 10.0363 -2.6409 0.3952 17 1 10.0089 -3.5157 -0.2374 18 6 11.2467 -2.0821 0.7469 19 7 11.2801 -1.0171 1.5178 20 14 12.8391 -2.8378 0.1286 21 1 13.2111 -2.2166 -1.1680 22 1 13.9185 -2.5981 1.1200 23 1 12.6538 -4.2993 -0.0579 24 6 3.6480 -1.3123 0.0011 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3633 1.0276 0.0005 27 1 -0.3634 -0.5139 -0.8900 28 1 0.9480 -2.6292 0.8851 29 1 0.9762 -2.6434 -0.8990 30 1 2.4784 -4.3738 0.6776 31 1 2.9573 -3.8798 -0.9795 32 1 5.3586 -4.2993 0.4992 33 1 5.2951 -3.2556 -0.9412 34 1 8.8107 -3.0791 2.7748 35 1 9.5831 -1.4760 2.8019 36 1 7.8080 -1.6084 2.7836 37 1 12.1316 -0.6242 1.7655 38 1 4.0340 -1.2669 -1.0172 39 1 4.1055 -0.5374 0.6161 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344688384.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:44 Heat of formation + Delta-G solvation = -155.474870 kcal Electronic energy + Delta-G solvation = -20563.431909 eV Core-core repulsion = 17276.841760 eV Total energy + Delta-G solvation = -3286.590149 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.47544 -40.91741 -38.75413 -37.32331 -35.93140 -33.80309 -32.62646 -30.76581 -30.33390 -27.32121 -27.04826 -24.98157 -23.83378 -21.64595 -21.51207 -20.30007 -18.67882 -18.13565 -17.90048 -17.79473 -17.44923 -16.92716 -16.35407 -16.11671 -15.47177 -14.98505 -14.72898 -14.49625 -14.07694 -13.97166 -13.75559 -13.45172 -13.25442 -13.07643 -12.99989 -12.94935 -12.81234 -12.63152 -12.46701 -12.28920 -12.14234 -12.04813 -11.75486 -11.49217 -11.12529 -11.03142 -11.00066 -10.54632 -9.73017 -8.21120 -6.35069 1.40985 1.41845 1.44259 1.53647 1.58147 1.85393 2.01620 2.43096 3.08934 3.36937 3.49222 3.70252 3.87972 4.12045 4.20509 4.27590 4.37934 4.43010 4.47498 4.54269 4.63650 4.67154 4.68041 4.80784 4.88834 4.90966 4.96759 5.02778 5.09356 5.19027 5.29206 5.37789 5.47643 5.67843 5.87353 6.08991 6.51137 6.71911 7.04529 7.10517 7.34146 8.85447 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.034639 B = 0.003563 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.148445 B = 7856.388061 C = 8313.936686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.510 3.490 3 O -0.610 6.610 4 N -0.623 5.623 5 C 0.099 3.901 6 C -0.115 4.115 7 C -0.090 4.090 8 H 0.100 0.900 9 C 0.067 3.933 10 O -0.365 6.365 11 C 0.475 3.525 12 O -0.541 6.541 13 C 0.047 3.953 14 H 0.046 0.954 15 C -0.120 4.120 16 C -0.539 4.539 17 H 0.058 0.942 18 C 0.021 3.979 19 N -0.911 5.911 20 Si 0.965 3.035 21 H -0.274 1.274 22 H -0.274 1.274 23 H -0.273 1.273 24 C 0.106 3.894 25 H 0.114 0.886 26 H 0.087 0.913 27 H 0.114 0.886 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.117 0.883 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.031 0.969 35 H 0.076 0.924 36 H 0.047 0.953 37 H 0.268 0.732 38 H 0.058 0.942 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.678 -5.219 -0.885 24.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.302 3.698 3 O -0.492 6.492 4 N -0.356 5.356 5 C -0.022 4.022 6 C -0.153 4.153 7 C -0.109 4.109 8 H 0.118 0.882 9 C -0.007 4.007 10 O -0.282 6.282 11 C 0.320 3.680 12 O -0.431 6.431 13 C 0.028 3.972 14 H 0.064 0.936 15 C -0.178 4.178 16 C -0.577 4.577 17 H 0.076 0.924 18 C -0.179 4.179 19 N -0.549 5.549 20 Si 0.790 3.210 21 H -0.199 1.199 22 H -0.199 1.199 23 H -0.198 1.198 24 C -0.017 4.017 25 H 0.133 0.867 26 H 0.106 0.894 27 H 0.132 0.868 28 H 0.117 0.883 29 H 0.116 0.884 30 H 0.136 0.864 31 H 0.107 0.893 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.051 0.949 35 H 0.095 0.905 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -23.302 -4.778 -1.014 23.808 hybrid contribution 1.332 -0.070 -0.447 1.407 sum -21.970 -4.849 -1.461 22.546 Atomic orbital electron populations 1.21906 0.86936 1.06070 1.06586 1.21565 0.92466 0.81310 0.74496 1.90723 1.72467 1.33000 1.52976 1.48759 1.06885 1.07394 1.72587 1.22366 0.96291 0.79004 1.04581 1.22798 0.91320 0.97807 1.03340 1.22398 0.92307 0.94174 1.01998 0.88166 1.23140 0.84029 0.94826 0.98705 1.86575 1.15791 1.56227 1.69632 1.24725 0.83866 0.83107 0.76288 1.90469 1.86154 1.29278 1.37209 1.18681 0.87568 0.95103 0.95849 0.93645 1.21547 1.01520 1.00277 0.94416 1.21269 0.90445 1.14040 1.31959 0.92378 1.25680 1.02172 0.95216 0.94849 1.69971 1.27171 1.21800 1.35969 0.85441 0.78507 0.78729 0.78310 1.19921 1.19853 1.19783 1.22155 0.81565 0.97722 1.00305 0.86747 0.89375 0.86777 0.88321 0.88413 0.86423 0.89340 0.90137 0.91536 0.94940 0.90539 0.93441 0.92264 0.92353 0.92881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 9.51 71.24 0.68 -1.03 16 2 C 0.51 11.97 7.96 87.66 0.70 12.67 16 3 O -0.61 -21.81 17.34 -3.00 -0.05 -21.86 16 4 N -0.62 -12.62 3.33 -811.82 -2.70 -15.32 16 5 C 0.10 0.94 6.47 86.73 0.56 1.51 16 6 C -0.12 -1.25 6.45 31.92 0.21 -1.05 16 7 C -0.09 -1.84 3.34 -9.26 -0.03 -1.87 16 8 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 9 C 0.07 1.89 4.91 71.98 0.35 2.25 16 10 O -0.36 -14.20 9.98 -51.40 -0.51 -14.71 16 11 C 0.47 22.53 7.25 71.24 0.52 23.05 16 12 O -0.54 -27.68 15.21 21.97 0.33 -27.34 16 13 C 0.05 2.47 2.74 -12.28 -0.03 2.44 16 14 H 0.05 2.53 8.14 -2.39 -0.02 2.51 16 15 C -0.12 -5.77 8.90 71.98 0.64 -5.13 16 16 C -0.54 -31.12 8.37 25.60 0.21 -30.91 16 17 H 0.06 3.49 6.76 -2.91 -0.02 3.47 16 18 C 0.02 1.15 5.30 84.65 0.45 1.60 16 19 N -0.91 -51.62 11.32 21.45 0.24 -51.38 16 20 Si 0.97 44.33 29.54 68.60 2.03 46.35 16 21 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 22 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 23 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 24 C 0.11 2.75 6.25 86.85 0.54 3.29 16 25 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.09 1.07 8.12 -2.39 -0.02 1.05 16 27 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.09 0.91 8.05 -2.39 -0.02 0.89 16 32 H 0.08 2.14 8.13 -2.38 -0.02 2.12 16 33 H 0.07 1.89 8.09 -2.39 -0.02 1.87 16 34 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.08 3.99 6.07 -2.39 -0.01 3.98 16 36 H 0.05 2.00 8.11 -2.39 -0.02 1.98 16 37 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 38 H 0.06 1.62 8.00 -2.39 -0.02 1.60 16 39 H 0.05 1.72 8.04 -2.39 -0.02 1.70 16 Total: -1.00 -76.10 328.31 5.16 -70.95 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: 1.03 Total: 6.50 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: 4.79 Total: 6.81 kcal Atomic # 7 Polarization: -64.24 SS G_CDS: -2.46 Total: -66.70 kcal Atomic # 8 Polarization: -63.68 SS G_CDS: -0.23 Total: -63.91 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Total: -76.10 5.16 -70.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344688384.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.529 kcal (2) G-P(sol) polarization free energy of solvation -76.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds