Wall clock time and date at job start Mon Mar 30 2020 01:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.21278 * 119.99997 * 2 1 4 4 N 1.34779 * 120.00124 * 179.97438 * 2 1 3 5 5 C 1.47021 * 125.64754 * 359.96245 * 4 2 1 6 6 C 1.54326 * 107.27162 * 178.97611 * 5 4 2 7 7 C 1.55151 * 102.94009 * 337.80305 * 6 5 4 8 8 H 1.08994 * 111.04405 * 277.41292 * 7 6 5 9 9 C 1.53005 * 111.00172 * 153.57516 * 7 6 5 10 10 O 1.45202 * 109.47174 * 181.35008 * 9 7 6 11 11 C 1.34230 * 117.00121 * 180.02562 * 10 9 7 12 12 O 1.20823 * 120.00009 * 359.97438 * 11 10 9 13 13 C 1.50701 * 120.00173 * 180.02562 * 11 10 9 14 14 H 1.09004 * 109.47401 * 59.99649 * 13 11 10 15 15 C 1.53004 * 109.46910 * 299.99887 * 13 11 10 16 16 C 1.50698 * 109.47347 * 179.97438 * 13 11 10 17 17 H 1.08000 * 119.99401 * 5.46662 * 16 13 11 18 18 C 1.37870 * 120.00033 * 185.46470 * 16 13 11 19 19 N 1.31518 * 120.00209 * 9.65110 * 18 16 13 20 20 Si 1.86808 * 119.99913 * 189.65131 * 18 16 13 21 21 H 1.48502 * 109.46896 * 84.99510 * 20 18 16 22 22 H 1.48498 * 109.47017 * 204.99405 * 20 18 16 23 23 H 1.48497 * 109.47026 * 324.99271 * 20 18 16 24 24 C 1.47426 * 125.64797 * 180.02562 * 4 2 1 25 25 H 1.09005 * 109.47317 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47615 * 300.00464 * 1 2 3 27 27 H 1.09005 * 109.47407 * 60.00222 * 1 2 3 28 28 H 1.08999 * 109.88213 * 298.39526 * 5 4 2 29 29 H 1.09000 * 109.88366 * 59.40037 * 5 4 2 30 30 H 1.08998 * 110.71664 * 219.44468 * 6 5 4 31 31 H 1.08991 * 110.71918 * 96.16867 * 6 5 4 32 32 H 1.09001 * 109.46973 * 61.35261 * 9 7 6 33 33 H 1.08997 * 109.47374 * 301.34840 * 9 7 6 34 34 H 1.09003 * 109.46847 * 63.63634 * 15 13 11 35 35 H 1.08998 * 109.46894 * 183.62700 * 15 13 11 36 36 H 1.08997 * 109.46909 * 303.63429 * 15 13 11 37 37 H 0.96994 * 119.99913 * 180.02562 * 19 18 16 38 38 H 1.08994 * 110.36561 * 85.25804 * 24 4 2 39 39 H 1.08996 * 110.36589 * 322.92750 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.5746 -2.5066 0.0019 6 6 2.7280 -3.5316 -0.0243 7 6 3.9080 -2.7120 -0.6101 8 1 3.8591 -2.6786 -1.6985 9 6 5.2518 -3.2737 -0.1415 10 8 6.3296 -2.4645 -0.6820 11 6 7.5822 -2.8266 -0.3634 12 8 7.7719 -3.7874 0.3441 13 6 8.7520 -2.0339 -0.8872 14 1 8.6786 -1.0039 -0.5379 15 6 8.7388 -2.0557 -2.4170 16 6 10.0362 -2.6432 -0.3867 17 1 10.0135 -3.5665 0.1731 18 6 11.2400 -2.0221 -0.6436 19 7 11.2589 -0.8106 -1.1550 20 14 12.8442 -2.9014 -0.2653 21 1 13.2123 -3.7736 -1.4094 22 1 13.9170 -1.8993 -0.0414 23 1 12.6783 -3.7301 0.9557 24 6 3.6479 -1.3123 0.0011 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 0.9782 -2.6426 0.9040 29 1 0.9459 -2.6299 -0.8799 30 1 2.4824 -4.3720 -0.6735 31 1 2.9606 -3.8763 0.9832 32 1 5.3581 -4.3007 -0.4910 33 1 5.2940 -3.2542 0.9475 34 1 7.8400 -1.5569 -2.7797 35 1 9.6198 -1.5373 -2.7954 36 1 8.7470 -3.0884 -2.7657 37 1 12.1058 -0.3738 -1.3361 38 1 4.0333 -1.2653 1.0196 39 1 4.1059 -0.5384 -0.6149 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344688386.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:46 Heat of formation + Delta-G solvation = -134.551673 kcal Electronic energy + Delta-G solvation = -20557.843782 eV Core-core repulsion = 17272.160931 eV Total energy + Delta-G solvation = -3285.682851 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.28067 -39.50022 -37.71825 -35.70431 -33.84026 -32.80135 -30.72074 -30.10642 -29.45712 -25.93312 -25.16920 -23.62971 -22.65609 -20.62200 -19.86962 -19.37995 -17.24128 -16.98943 -16.49824 -15.99184 -15.91279 -15.46162 -15.26605 -14.65212 -14.17576 -13.91077 -13.44831 -13.13491 -12.88867 -12.81547 -12.71114 -12.51329 -12.19431 -11.88958 -11.70539 -11.66153 -11.18247 -11.02913 -10.91077 -10.85288 -10.67345 -10.38749 -10.08366 -10.04845 -9.99026 -9.12365 -9.05380 -8.84948 -8.44199 -6.12636 -4.13969 2.46373 2.79502 3.29519 3.31955 3.34142 3.37435 3.46664 4.19790 4.25182 4.42063 4.58847 4.65643 4.88182 4.96551 5.06691 5.13095 5.16014 5.22650 5.28684 5.43212 5.50733 5.56730 5.59895 5.70311 5.86739 5.98090 6.07579 6.20323 6.60468 6.81213 6.82021 7.19015 7.32534 7.42128 7.63242 7.89931 7.99123 8.11872 8.84389 8.94936 9.50192 10.97616 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.034703 B = 0.003573 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.646972 B = 7834.203215 C = 8322.753750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.523 3.477 3 O -0.544 6.544 4 N -0.623 5.623 5 C 0.102 3.898 6 C -0.126 4.126 7 C -0.099 4.099 8 H 0.096 0.904 9 C 0.074 3.926 10 O -0.365 6.365 11 C 0.466 3.534 12 O -0.518 6.518 13 C 0.055 3.945 14 H 0.071 0.929 15 C -0.126 4.126 16 C -0.516 4.516 17 H 0.075 0.925 18 C 0.064 3.936 19 N -0.889 5.889 20 Si 0.901 3.099 21 H -0.278 1.278 22 H -0.286 1.286 23 H -0.272 1.272 24 C 0.111 3.889 25 H 0.075 0.925 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.028 0.972 35 H 0.078 0.922 36 H 0.032 0.968 37 H 0.264 0.736 38 H 0.071 0.929 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.622 -3.853 0.241 21.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.313 3.687 3 O -0.421 6.421 4 N -0.358 5.358 5 C -0.021 4.021 6 C -0.163 4.163 7 C -0.118 4.118 8 H 0.115 0.885 9 C -0.001 4.001 10 O -0.284 6.284 11 C 0.311 3.689 12 O -0.405 6.405 13 C 0.036 3.964 14 H 0.089 0.911 15 C -0.184 4.184 16 C -0.554 4.554 17 H 0.093 0.907 18 C -0.138 4.138 19 N -0.527 5.527 20 Si 0.728 3.272 21 H -0.204 1.204 22 H -0.212 1.212 23 H -0.197 1.197 24 C -0.011 4.011 25 H 0.094 0.906 26 H 0.112 0.888 27 H 0.113 0.887 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.047 0.953 35 H 0.097 0.903 36 H 0.051 0.949 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -21.202 -3.361 0.415 21.471 hybrid contribution 0.794 -0.649 0.286 1.065 sum -20.407 -4.011 0.701 20.810 Atomic orbital electron populations 1.21872 0.91515 1.04196 1.05243 1.20503 0.90315 0.82112 0.75812 1.90758 1.70684 1.30630 1.50017 1.48653 1.07828 1.05748 1.73565 1.22044 0.96331 0.81878 1.01836 1.22654 0.93514 0.97481 1.02695 1.22377 0.92923 0.94677 1.01819 0.88525 1.22710 0.84261 0.94612 0.98565 1.86633 1.16253 1.55655 1.69819 1.25332 0.82847 0.83782 0.76923 1.90495 1.85448 1.28429 1.36089 1.18770 0.86897 0.96488 0.94217 0.91128 1.21656 1.00992 0.99718 0.96069 1.21078 0.88966 1.09558 1.35806 0.90670 1.24935 0.99302 0.94525 0.95032 1.69966 1.26679 1.11906 1.44148 0.86453 0.82386 0.79364 0.78961 1.20407 1.21223 1.19725 1.22305 0.79730 0.97518 1.01596 0.90582 0.88770 0.88732 0.91096 0.91056 0.89301 0.89910 0.91229 0.91533 0.95282 0.90321 0.94857 0.92645 0.91091 0.89358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.18 10.21 36.00 0.37 -0.81 16 2 C 0.52 6.35 7.96 -10.99 -0.09 6.27 16 3 O -0.54 -9.32 17.36 5.56 0.10 -9.23 16 4 N -0.62 -6.80 3.33 -170.51 -0.57 -7.37 16 5 C 0.10 0.71 5.81 -3.06 -0.02 0.69 16 6 C -0.13 -0.92 6.42 -24.90 -0.16 -1.08 16 7 C -0.10 -1.09 3.34 -88.46 -0.30 -1.38 16 8 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 9 C 0.07 1.07 4.90 37.16 0.18 1.25 16 10 O -0.37 -7.01 10.01 -39.26 -0.39 -7.41 16 11 C 0.47 10.83 7.25 36.01 0.26 11.09 16 12 O -0.52 -13.02 15.22 -18.75 -0.29 -13.30 16 13 C 0.06 1.41 2.60 -92.92 -0.24 1.16 16 14 H 0.07 1.90 8.09 -51.93 -0.42 1.48 16 15 C -0.13 -2.94 9.00 37.16 0.33 -2.60 16 16 C -0.52 -14.54 8.28 -34.44 -0.29 -14.83 16 17 H 0.08 2.20 6.79 -52.49 -0.36 1.85 16 18 C 0.06 1.78 5.17 -17.82 -0.09 1.69 16 19 N -0.89 -25.14 12.17 55.43 0.67 -24.47 16 20 Si 0.90 21.54 29.55 -169.99 -5.02 16.51 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 24 C 0.11 1.42 6.24 -2.51 -0.02 1.40 16 25 H 0.08 0.35 6.60 -51.93 -0.34 0.00 16 26 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 29 H 0.07 0.38 8.01 -51.93 -0.42 -0.04 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.58 8.04 -51.93 -0.42 0.16 16 32 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 33 H 0.07 0.96 8.09 -51.93 -0.42 0.54 16 34 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 1.96 6.84 -51.93 -0.35 1.61 16 36 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 38 H 0.07 0.95 8.00 -51.93 -0.42 0.53 16 39 H 0.09 1.34 8.04 -51.93 -0.42 0.92 16 LS Contribution 328.01 15.07 4.94 4.94 Total: -1.00 -33.56 328.01 -6.68 -40.24 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -6.07 Total: -2.77 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -0.05 Total: 2.84 kcal Atomic # 7 Polarization: -31.94 SS G_CDS: 0.11 Total: -31.84 kcal Atomic # 8 Polarization: -29.35 SS G_CDS: -0.58 Total: -29.93 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.56 -6.68 -40.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344688386.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.312 kcal (2) G-P(sol) polarization free energy of solvation -33.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds