Wall clock time and date at job start Mon Mar 30 2020 01:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.21278 * 119.99997 * 2 1 4 4 N 1.34779 * 120.00124 * 179.97438 * 2 1 3 5 5 C 1.47021 * 125.64754 * 359.96245 * 4 2 1 6 6 C 1.54326 * 107.27162 * 178.97611 * 5 4 2 7 7 C 1.55151 * 102.94009 * 337.80305 * 6 5 4 8 8 H 1.08994 * 111.04405 * 277.41292 * 7 6 5 9 9 C 1.53005 * 111.00172 * 153.57516 * 7 6 5 10 10 O 1.45202 * 109.47174 * 181.35008 * 9 7 6 11 11 C 1.34230 * 117.00121 * 180.02562 * 10 9 7 12 12 O 1.20823 * 120.00009 * 359.97438 * 11 10 9 13 13 C 1.50701 * 120.00173 * 180.02562 * 11 10 9 14 14 H 1.09004 * 109.47401 * 59.99649 * 13 11 10 15 15 C 1.53004 * 109.46910 * 299.99887 * 13 11 10 16 16 C 1.50698 * 109.47347 * 179.97438 * 13 11 10 17 17 H 1.08000 * 119.99401 * 5.46662 * 16 13 11 18 18 C 1.37870 * 120.00033 * 185.46470 * 16 13 11 19 19 N 1.31518 * 120.00209 * 9.65110 * 18 16 13 20 20 Si 1.86808 * 119.99913 * 189.65131 * 18 16 13 21 21 H 1.48502 * 109.46896 * 84.99510 * 20 18 16 22 22 H 1.48498 * 109.47017 * 204.99405 * 20 18 16 23 23 H 1.48497 * 109.47026 * 324.99271 * 20 18 16 24 24 C 1.47426 * 125.64797 * 180.02562 * 4 2 1 25 25 H 1.09005 * 109.47317 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47615 * 300.00464 * 1 2 3 27 27 H 1.09005 * 109.47407 * 60.00222 * 1 2 3 28 28 H 1.08999 * 109.88213 * 298.39526 * 5 4 2 29 29 H 1.09000 * 109.88366 * 59.40037 * 5 4 2 30 30 H 1.08998 * 110.71664 * 219.44468 * 6 5 4 31 31 H 1.08991 * 110.71918 * 96.16867 * 6 5 4 32 32 H 1.09001 * 109.46973 * 61.35261 * 9 7 6 33 33 H 1.08997 * 109.47374 * 301.34840 * 9 7 6 34 34 H 1.09003 * 109.46847 * 63.63634 * 15 13 11 35 35 H 1.08998 * 109.46894 * 183.62700 * 15 13 11 36 36 H 1.08997 * 109.46909 * 303.63429 * 15 13 11 37 37 H 0.96994 * 119.99913 * 180.02562 * 19 18 16 38 38 H 1.08994 * 110.36561 * 85.25804 * 24 4 2 39 39 H 1.08996 * 110.36589 * 322.92750 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.5746 -2.5066 0.0019 6 6 2.7280 -3.5316 -0.0243 7 6 3.9080 -2.7120 -0.6101 8 1 3.8591 -2.6786 -1.6985 9 6 5.2518 -3.2737 -0.1415 10 8 6.3296 -2.4645 -0.6820 11 6 7.5822 -2.8266 -0.3634 12 8 7.7719 -3.7874 0.3441 13 6 8.7520 -2.0339 -0.8872 14 1 8.6786 -1.0039 -0.5379 15 6 8.7388 -2.0557 -2.4170 16 6 10.0362 -2.6432 -0.3867 17 1 10.0135 -3.5665 0.1731 18 6 11.2400 -2.0221 -0.6436 19 7 11.2589 -0.8106 -1.1550 20 14 12.8442 -2.9014 -0.2653 21 1 13.2123 -3.7736 -1.4094 22 1 13.9170 -1.8993 -0.0414 23 1 12.6783 -3.7301 0.9557 24 6 3.6479 -1.3123 0.0011 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 0.9782 -2.6426 0.9040 29 1 0.9459 -2.6299 -0.8799 30 1 2.4824 -4.3720 -0.6735 31 1 2.9606 -3.8763 0.9832 32 1 5.3581 -4.3007 -0.4910 33 1 5.2940 -3.2542 0.9475 34 1 7.8400 -1.5569 -2.7797 35 1 9.6198 -1.5373 -2.7954 36 1 8.7470 -3.0884 -2.7657 37 1 12.1058 -0.3738 -1.3361 38 1 4.0333 -1.2653 1.0196 39 1 4.1059 -0.5384 -0.6149 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344688386.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:46 Heat of formation + Delta-G solvation = -156.046820 kcal Electronic energy + Delta-G solvation = -20558.775882 eV Core-core repulsion = 17272.160931 eV Total energy + Delta-G solvation = -3286.614951 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.47868 -40.93093 -38.76443 -37.32027 -35.88608 -33.83219 -32.71146 -30.80011 -30.31246 -27.28129 -27.04770 -25.02430 -23.87070 -21.64645 -21.51014 -20.28660 -18.68955 -18.14585 -17.91868 -17.78901 -17.45370 -16.89704 -16.35607 -16.10599 -15.49649 -15.00061 -14.70842 -14.48671 -14.07901 -13.98397 -13.77395 -13.52460 -13.32621 -13.11848 -12.96473 -12.90653 -12.87504 -12.60543 -12.43510 -12.33855 -12.13048 -12.04546 -11.75750 -11.48875 -11.17194 -11.02035 -10.95303 -10.56317 -9.73361 -8.24856 -6.33954 1.41268 1.41946 1.44589 1.52811 1.56300 1.85668 2.01603 2.43183 3.07943 3.36623 3.48931 3.70570 3.88118 4.12207 4.19491 4.27875 4.36810 4.41910 4.50716 4.52539 4.63613 4.65590 4.67445 4.80393 4.84744 4.89459 4.95080 5.01789 5.07578 5.18456 5.28503 5.37078 5.46785 5.65842 5.77009 6.05579 6.50399 6.73034 7.04900 7.09744 7.33927 8.85125 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.034703 B = 0.003573 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.646972 B = 7834.203215 C = 8322.753750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.511 3.489 3 O -0.610 6.610 4 N -0.622 5.622 5 C 0.097 3.903 6 C -0.115 4.115 7 C -0.089 4.089 8 H 0.101 0.899 9 C 0.067 3.933 10 O -0.365 6.365 11 C 0.475 3.525 12 O -0.541 6.541 13 C 0.046 3.954 14 H 0.048 0.952 15 C -0.113 4.113 16 C -0.541 4.541 17 H 0.058 0.942 18 C 0.023 3.977 19 N -0.912 5.912 20 Si 0.962 3.038 21 H -0.268 1.268 22 H -0.277 1.277 23 H -0.274 1.274 24 C 0.105 3.895 25 H 0.109 0.891 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.118 0.882 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.051 0.949 35 H 0.058 0.942 36 H 0.039 0.961 37 H 0.268 0.732 38 H 0.058 0.942 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.730 -5.705 -0.023 24.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.302 3.698 3 O -0.492 6.492 4 N -0.356 5.356 5 C -0.024 4.024 6 C -0.153 4.153 7 C -0.108 4.108 8 H 0.119 0.881 9 C -0.007 4.007 10 O -0.282 6.282 11 C 0.320 3.680 12 O -0.431 6.431 13 C 0.027 3.973 14 H 0.066 0.934 15 C -0.171 4.171 16 C -0.578 4.578 17 H 0.076 0.924 18 C -0.177 4.177 19 N -0.550 5.550 20 Si 0.787 3.213 21 H -0.193 1.193 22 H -0.202 1.202 23 H -0.199 1.199 24 C -0.018 4.018 25 H 0.127 0.873 26 H 0.121 0.879 27 H 0.122 0.878 28 H 0.116 0.884 29 H 0.118 0.882 30 H 0.136 0.864 31 H 0.106 0.894 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.058 0.942 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -23.359 -5.246 0.138 23.941 hybrid contribution 1.362 -0.061 0.393 1.419 sum -21.996 -5.307 0.531 22.634 Atomic orbital electron populations 1.21895 0.86991 1.06651 1.06072 1.21569 0.92423 0.81349 0.74413 1.90724 1.72335 1.33012 1.53092 1.48810 1.06926 1.07403 1.72462 1.22393 0.96389 0.79028 1.04561 1.22726 0.91336 0.97857 1.03367 1.22333 0.92322 0.94125 1.02042 0.88082 1.23142 0.84010 0.94881 0.98666 1.86577 1.15784 1.56317 1.69543 1.24709 0.83854 0.83002 0.76398 1.90471 1.86167 1.29364 1.37074 1.18682 0.87589 0.95399 0.95659 0.93407 1.21484 1.01123 1.00088 0.94418 1.21224 0.90716 1.09338 1.36541 0.92363 1.25674 1.02267 0.95087 0.94698 1.70051 1.27665 1.12806 1.44445 0.85507 0.78538 0.78439 0.78834 1.19323 1.20236 1.19932 1.22169 0.81547 0.97783 1.00309 0.87272 0.87863 0.87832 0.88414 0.88232 0.86384 0.89357 0.90041 0.91617 0.92991 0.92305 0.94191 0.92273 0.92392 0.92853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 10.21 71.23 0.73 -1.03 16 2 C 0.51 12.06 7.96 87.65 0.70 12.76 16 3 O -0.61 -21.82 17.36 -3.02 -0.05 -21.87 16 4 N -0.62 -12.71 3.33 -811.76 -2.70 -15.41 16 5 C 0.10 0.94 5.81 86.73 0.50 1.45 16 6 C -0.12 -1.25 6.42 31.78 0.20 -1.05 16 7 C -0.09 -1.82 3.34 -9.39 -0.03 -1.85 16 8 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 9 C 0.07 1.88 4.90 71.98 0.35 2.24 16 10 O -0.36 -14.12 10.01 -51.42 -0.51 -14.63 16 11 C 0.47 22.45 7.25 71.24 0.52 22.97 16 12 O -0.54 -27.59 15.22 21.97 0.33 -27.25 16 13 C 0.05 2.40 2.60 -12.28 -0.03 2.36 16 14 H 0.05 2.69 8.09 -2.38 -0.02 2.67 16 15 C -0.11 -5.31 9.00 71.98 0.65 -4.66 16 16 C -0.54 -31.13 8.28 25.60 0.21 -30.92 16 17 H 0.06 3.50 6.79 -2.91 -0.02 3.48 16 18 C 0.02 1.28 5.17 84.65 0.44 1.72 16 19 N -0.91 -52.20 12.17 21.45 0.26 -51.94 16 20 Si 0.96 44.28 29.55 68.60 2.03 46.31 16 21 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 22 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 23 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 24 C 0.11 2.74 6.24 86.86 0.54 3.28 16 25 H 0.11 0.47 6.60 -2.38 -0.02 0.46 16 26 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 28 H 0.10 0.52 8.09 -2.39 -0.02 0.50 16 29 H 0.10 0.50 8.01 -2.39 -0.02 0.48 16 30 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.09 0.92 8.04 -2.39 -0.02 0.90 16 32 H 0.08 2.14 8.13 -2.39 -0.02 2.12 16 33 H 0.07 1.87 8.09 -2.39 -0.02 1.85 16 34 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.06 2.97 6.84 -2.39 -0.02 2.96 16 36 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.27 14.46 8.31 -92.71 -0.77 13.68 16 38 H 0.06 1.62 8.00 -2.39 -0.02 1.60 16 39 H 0.05 1.73 8.04 -2.39 -0.02 1.71 16 Total: -1.00 -76.38 328.01 5.16 -71.21 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: 1.03 Total: 6.33 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: 4.78 Total: 7.26 kcal Atomic # 7 Polarization: -64.92 SS G_CDS: -2.44 Total: -67.36 kcal Atomic # 8 Polarization: -63.52 SS G_CDS: -0.23 Total: -63.75 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -76.38 5.16 -71.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344688386.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.832 kcal (2) G-P(sol) polarization free energy of solvation -76.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds