Wall clock time and date at job start Mon Mar 30 2020 01:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21286 * 119.99951 * 2 1 4 4 N 1.34772 * 120.00407 * 180.02562 * 2 1 3 5 5 C 1.47023 * 125.64623 * 0.04362 * 4 2 1 6 6 C 1.54428 * 107.28154 * 181.02254 * 5 4 2 7 7 C 1.55156 * 102.89529 * 22.18672 * 6 5 4 8 8 H 1.09002 * 111.00677 * 82.59320 * 7 6 5 9 9 C 1.53004 * 111.00511 * 206.40857 * 7 6 5 10 10 O 1.45201 * 109.47194 * 181.81761 * 9 7 6 11 11 C 1.34225 * 116.99860 * 179.97438 * 10 9 7 12 12 O 1.20826 * 119.99831 * 0.02562 * 11 10 9 13 13 C 1.50707 * 119.99941 * 179.97438 * 11 10 9 14 14 H 1.08998 * 109.46596 * 60.00182 * 13 11 10 15 15 C 1.52997 * 109.46927 * 300.00446 * 13 11 10 16 16 C 1.50692 * 109.46935 * 180.02562 * 13 11 10 17 17 H 1.08001 * 120.00207 * 0.02562 * 16 13 11 18 18 C 1.37879 * 119.99632 * 180.02562 * 16 13 11 19 19 N 1.31509 * 120.00342 * 0.02562 * 18 16 13 20 20 Si 1.86803 * 119.99713 * 180.02562 * 18 16 13 21 21 H 1.48504 * 109.47025 * 90.00411 * 20 18 16 22 22 H 1.48509 * 109.47009 * 209.99983 * 20 18 16 23 23 H 1.48500 * 109.47465 * 330.00238 * 20 18 16 24 24 C 1.47430 * 125.65481 * 179.97438 * 4 2 1 25 25 H 1.08997 * 109.46793 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47429 * 299.99731 * 1 2 3 27 27 H 1.08999 * 109.47584 * 59.99685 * 1 2 3 28 28 H 1.08996 * 109.87999 * 300.43573 * 5 4 2 29 29 H 1.08994 * 109.88372 * 61.45103 * 5 4 2 30 30 H 1.09001 * 110.72431 * 263.84058 * 6 5 4 31 31 H 1.09002 * 110.76272 * 140.53699 * 6 5 4 32 32 H 1.09001 * 109.46913 * 301.81931 * 9 7 6 33 33 H 1.08998 * 109.46911 * 61.81181 * 9 7 6 34 34 H 1.09007 * 109.47451 * 60.00203 * 15 13 11 35 35 H 1.09011 * 109.46695 * 179.97438 * 15 13 11 36 36 H 1.08999 * 109.47489 * 299.99830 * 15 13 11 37 37 H 0.96999 * 120.00299 * 179.97438 * 19 18 16 38 38 H 1.09008 * 110.36125 * 37.06961 * 24 4 2 39 39 H 1.08997 * 110.36558 * 274.74969 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 1.5747 -2.5066 -0.0020 6 6 2.7287 -3.5324 0.0242 7 6 3.9081 -2.7119 0.6100 8 1 3.8585 -2.6787 1.6984 9 6 5.2524 -3.2731 0.1422 10 8 6.3313 -2.5091 0.7428 11 6 7.5844 -2.8766 0.4324 12 8 7.7735 -3.8056 -0.3166 13 6 8.7554 -2.1298 1.0174 14 1 8.7228 -2.1974 2.1048 15 6 8.6856 -0.6608 0.5954 16 6 10.0399 -2.7361 0.5142 17 1 10.0112 -3.5778 -0.1619 18 6 11.2518 -2.2164 0.9170 19 7 11.2867 -1.1918 1.7407 20 14 12.8441 -2.9675 0.2926 21 1 13.2523 -2.2890 -0.9637 22 1 13.9068 -2.7960 1.3157 23 1 12.6391 -4.4146 0.0296 24 6 3.6480 -1.3123 -0.0011 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 0.9482 -2.6309 0.8812 29 1 0.9762 -2.6416 -0.9029 30 1 2.9614 -3.8770 -0.9834 31 1 2.4838 -4.3730 0.6735 32 1 5.3349 -4.3173 0.4437 33 1 5.3176 -3.2023 -0.9436 34 1 7.7565 -0.2220 0.9591 35 1 9.5324 -0.1206 1.0189 36 1 8.7182 -0.5932 -0.4920 37 1 12.1393 -0.8263 2.0244 38 1 4.1060 -0.5383 0.6149 39 1 4.0334 -1.2652 -1.0196 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344688387.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:48 Heat of formation + Delta-G solvation = -133.357152 kcal Electronic energy + Delta-G solvation = -20590.872580 eV Core-core repulsion = 17305.241527 eV Total energy + Delta-G solvation = -3285.631053 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.28141 -39.50030 -37.71820 -35.70607 -33.87680 -32.80635 -30.63336 -30.10724 -29.45019 -25.92176 -25.18647 -23.61640 -22.61751 -20.62666 -19.84318 -19.40507 -17.23222 -16.95047 -16.59071 -16.01957 -15.80408 -15.48165 -15.24279 -14.68792 -14.23850 -13.88358 -13.38174 -13.19658 -12.91428 -12.80129 -12.78034 -12.35052 -12.14896 -12.09668 -11.67749 -11.49301 -11.16514 -11.04196 -10.90046 -10.75653 -10.67306 -10.33854 -10.08833 -10.04900 -9.99000 -9.12107 -9.03463 -8.85588 -8.44306 -6.09745 -4.15429 2.45779 2.78840 3.29125 3.31331 3.34709 3.37429 3.47064 4.19013 4.24512 4.41487 4.59056 4.64965 4.88205 4.96551 5.06202 5.12733 5.16318 5.23432 5.28553 5.43043 5.50470 5.56544 5.59631 5.70251 5.86061 5.97255 6.07135 6.22287 6.68583 6.88973 6.90491 7.20680 7.31998 7.45048 7.75652 7.95479 7.98505 8.15140 8.84122 8.94022 9.50156 10.97635 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.036154 B = 0.003598 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.289390 B = 7780.052113 C = 8369.618028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.523 3.477 3 O -0.544 6.544 4 N -0.622 5.622 5 C 0.102 3.898 6 C -0.125 4.125 7 C -0.099 4.099 8 H 0.097 0.903 9 C 0.073 3.927 10 O -0.365 6.365 11 C 0.466 3.534 12 O -0.518 6.518 13 C 0.057 3.943 14 H 0.064 0.936 15 C -0.134 4.134 16 C -0.513 4.513 17 H 0.075 0.925 18 C 0.062 3.938 19 N -0.892 5.892 20 Si 0.904 3.096 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.272 1.272 24 C 0.110 3.890 25 H 0.075 0.925 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.024 0.976 35 H 0.096 0.904 36 H 0.031 0.969 37 H 0.263 0.737 38 H 0.088 0.912 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.590 -2.782 -1.804 21.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.313 3.687 3 O -0.421 6.421 4 N -0.358 5.358 5 C -0.021 4.021 6 C -0.163 4.163 7 C -0.118 4.118 8 H 0.115 0.885 9 C -0.002 4.002 10 O -0.283 6.283 11 C 0.311 3.689 12 O -0.405 6.405 13 C 0.039 3.961 14 H 0.082 0.918 15 C -0.191 4.191 16 C -0.551 4.551 17 H 0.093 0.907 18 C -0.140 4.140 19 N -0.530 5.530 20 Si 0.732 3.268 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.197 1.197 24 C -0.012 4.012 25 H 0.094 0.906 26 H 0.113 0.887 27 H 0.112 0.888 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.107 0.893 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.043 0.957 35 H 0.114 0.886 36 H 0.050 0.950 37 H 0.073 0.927 38 H 0.106 0.894 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -21.166 -2.311 -1.951 21.381 hybrid contribution 0.760 -0.599 -0.415 1.053 sum -20.405 -2.911 -2.365 20.747 Atomic orbital electron populations 1.21871 0.91504 1.04204 1.05244 1.20505 0.90319 0.82108 0.75804 1.90759 1.70689 1.30629 1.50043 1.48648 1.07816 1.05758 1.73549 1.22062 0.96331 0.81864 1.01841 1.22673 0.93502 0.97472 1.02691 1.22376 0.92926 0.94618 1.01895 0.88468 1.22708 0.84236 0.95330 0.97878 1.86630 1.16169 1.57946 1.67594 1.25359 0.82902 0.82424 0.78231 1.90494 1.85515 1.29446 1.35081 1.18762 0.86739 0.92826 0.97822 0.91827 1.21734 1.01191 0.96745 0.99464 1.21133 0.88617 1.16319 1.29071 0.90663 1.24938 0.99293 0.94930 0.94826 1.69879 1.26102 1.23700 1.33333 0.86383 0.82218 0.79765 0.78447 1.20522 1.21133 1.19689 1.22318 0.79768 0.97541 1.01547 0.90577 0.88726 0.88771 0.91063 0.91071 0.89924 0.89277 0.91208 0.91544 0.95710 0.88590 0.95006 0.92677 0.89381 0.91119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.17 10.21 36.00 0.37 -0.81 16 2 C 0.52 6.33 7.96 -10.99 -0.09 6.25 16 3 O -0.54 -9.29 17.36 5.55 0.10 -9.20 16 4 N -0.62 -6.79 3.33 -170.44 -0.57 -7.35 16 5 C 0.10 0.70 5.81 -3.01 -0.02 0.69 16 6 C -0.13 -0.92 6.43 -24.84 -0.16 -1.08 16 7 C -0.10 -1.10 3.32 -88.46 -0.29 -1.39 16 8 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 9 C 0.07 1.07 4.90 37.16 0.18 1.25 16 10 O -0.37 -7.05 10.04 -39.24 -0.39 -7.44 16 11 C 0.47 10.86 7.25 36.01 0.26 11.13 16 12 O -0.52 -13.06 15.21 -18.75 -0.29 -13.34 16 13 C 0.06 1.47 2.74 -92.93 -0.25 1.21 16 14 H 0.06 1.67 8.14 -51.93 -0.42 1.25 16 15 C -0.13 -3.22 8.90 37.16 0.33 -2.89 16 16 C -0.51 -14.48 8.37 -34.44 -0.29 -14.77 16 17 H 0.08 2.20 6.76 -52.49 -0.35 1.85 16 18 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 19 N -0.89 -25.01 11.32 55.43 0.63 -24.39 16 20 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 24 C 0.11 1.41 6.30 -2.52 -0.02 1.40 16 25 H 0.08 0.35 6.60 -51.93 -0.34 0.00 16 26 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.38 8.02 -51.93 -0.42 -0.04 16 29 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 30 H 0.08 0.58 8.04 -51.93 -0.42 0.16 16 31 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.98 8.13 -51.93 -0.42 0.56 16 33 H 0.07 0.97 8.03 -51.93 -0.42 0.55 16 34 H 0.02 0.52 8.11 -51.93 -0.42 0.10 16 35 H 0.10 2.49 6.07 -51.92 -0.32 2.18 16 36 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 38 H 0.09 1.33 8.04 -51.92 -0.42 0.91 16 39 H 0.07 0.94 7.96 -51.93 -0.41 0.52 16 LS Contribution 326.62 15.07 4.92 4.92 Total: -1.00 -33.43 326.62 -6.72 -40.15 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -6.03 Total: -2.48 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -0.07 Total: 2.59 kcal Atomic # 7 Polarization: -31.80 SS G_CDS: 0.06 Total: -31.74 kcal Atomic # 8 Polarization: -29.40 SS G_CDS: -0.58 Total: -29.98 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.43 -6.72 -40.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344688387.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.212 kcal (2) G-P(sol) polarization free energy of solvation -33.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds