Wall clock time and date at job start Mon Mar 30 2020 01:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21286 * 119.99951 * 2 1 4 4 N 1.34772 * 120.00407 * 180.02562 * 2 1 3 5 5 C 1.47023 * 125.64623 * 0.04362 * 4 2 1 6 6 C 1.54428 * 107.28154 * 181.02254 * 5 4 2 7 7 C 1.55156 * 102.89529 * 22.18672 * 6 5 4 8 8 H 1.09002 * 111.00677 * 82.59320 * 7 6 5 9 9 C 1.53004 * 111.00511 * 206.40857 * 7 6 5 10 10 O 1.45201 * 109.47194 * 181.81761 * 9 7 6 11 11 C 1.34225 * 116.99860 * 179.97438 * 10 9 7 12 12 O 1.20826 * 119.99831 * 0.02562 * 11 10 9 13 13 C 1.50707 * 119.99941 * 179.97438 * 11 10 9 14 14 H 1.08998 * 109.46596 * 60.00182 * 13 11 10 15 15 C 1.52997 * 109.46927 * 300.00446 * 13 11 10 16 16 C 1.50692 * 109.46935 * 180.02562 * 13 11 10 17 17 H 1.08001 * 120.00207 * 0.02562 * 16 13 11 18 18 C 1.37879 * 119.99632 * 180.02562 * 16 13 11 19 19 N 1.31509 * 120.00342 * 0.02562 * 18 16 13 20 20 Si 1.86803 * 119.99713 * 180.02562 * 18 16 13 21 21 H 1.48504 * 109.47025 * 90.00411 * 20 18 16 22 22 H 1.48509 * 109.47009 * 209.99983 * 20 18 16 23 23 H 1.48500 * 109.47465 * 330.00238 * 20 18 16 24 24 C 1.47430 * 125.65481 * 179.97438 * 4 2 1 25 25 H 1.08997 * 109.46793 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47429 * 299.99731 * 1 2 3 27 27 H 1.08999 * 109.47584 * 59.99685 * 1 2 3 28 28 H 1.08996 * 109.87999 * 300.43573 * 5 4 2 29 29 H 1.08994 * 109.88372 * 61.45103 * 5 4 2 30 30 H 1.09001 * 110.72431 * 263.84058 * 6 5 4 31 31 H 1.09002 * 110.76272 * 140.53699 * 6 5 4 32 32 H 1.09001 * 109.46913 * 301.81931 * 9 7 6 33 33 H 1.08998 * 109.46911 * 61.81181 * 9 7 6 34 34 H 1.09007 * 109.47451 * 60.00203 * 15 13 11 35 35 H 1.09011 * 109.46695 * 179.97438 * 15 13 11 36 36 H 1.08999 * 109.47489 * 299.99830 * 15 13 11 37 37 H 0.96999 * 120.00299 * 179.97438 * 19 18 16 38 38 H 1.09008 * 110.36125 * 37.06961 * 24 4 2 39 39 H 1.08997 * 110.36558 * 274.74969 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 1.5747 -2.5066 -0.0020 6 6 2.7287 -3.5324 0.0242 7 6 3.9081 -2.7119 0.6100 8 1 3.8585 -2.6787 1.6984 9 6 5.2524 -3.2731 0.1422 10 8 6.3313 -2.5091 0.7428 11 6 7.5844 -2.8766 0.4324 12 8 7.7735 -3.8056 -0.3166 13 6 8.7554 -2.1298 1.0174 14 1 8.7228 -2.1974 2.1048 15 6 8.6856 -0.6608 0.5954 16 6 10.0399 -2.7361 0.5142 17 1 10.0112 -3.5778 -0.1619 18 6 11.2518 -2.2164 0.9170 19 7 11.2867 -1.1918 1.7407 20 14 12.8441 -2.9675 0.2926 21 1 13.2523 -2.2890 -0.9637 22 1 13.9068 -2.7960 1.3157 23 1 12.6391 -4.4146 0.0296 24 6 3.6480 -1.3123 -0.0011 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 0.9482 -2.6309 0.8812 29 1 0.9762 -2.6416 -0.9029 30 1 2.9614 -3.8770 -0.9834 31 1 2.4838 -4.3730 0.6735 32 1 5.3349 -4.3173 0.4437 33 1 5.3176 -3.2023 -0.9436 34 1 7.7565 -0.2220 0.9591 35 1 9.5324 -0.1206 1.0189 36 1 8.7182 -0.5932 -0.4920 37 1 12.1393 -0.8263 2.0244 38 1 4.1060 -0.5383 0.6149 39 1 4.0334 -1.2652 -1.0196 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344688387.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:48 Heat of formation + Delta-G solvation = -154.598107 kcal Electronic energy + Delta-G solvation = -20591.793657 eV Core-core repulsion = 17305.241527 eV Total energy + Delta-G solvation = -3286.552130 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.48045 -40.93085 -38.76103 -37.32740 -35.93410 -33.83207 -32.63260 -30.79781 -30.30949 -27.32759 -27.03144 -24.99899 -23.86344 -21.67150 -21.48399 -20.29700 -18.64086 -18.15243 -17.98440 -17.89840 -17.18838 -17.02455 -16.36325 -16.09738 -15.59330 -14.89769 -14.71671 -14.48620 -14.24815 -13.85722 -13.70248 -13.52453 -13.32935 -13.08648 -12.99304 -12.95295 -12.77410 -12.62453 -12.42086 -12.31803 -12.14335 -12.05332 -11.75471 -11.49189 -11.12983 -11.03332 -10.99932 -10.54633 -9.73343 -8.21121 -6.34935 1.40987 1.42092 1.44247 1.53675 1.56388 1.85127 2.02114 2.43196 3.08967 3.35636 3.48458 3.70959 3.87909 4.11890 4.19782 4.27855 4.36898 4.42622 4.50359 4.51836 4.63677 4.65399 4.67768 4.80078 4.87890 4.89447 4.95705 5.01913 5.07573 5.18150 5.28143 5.37268 5.47409 5.67457 5.86031 6.08402 6.50365 6.71987 7.04532 7.09741 7.34229 8.85487 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.036154 B = 0.003598 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.289390 B = 7780.052113 C = 8369.618028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.511 3.489 3 O -0.609 6.609 4 N -0.622 5.622 5 C 0.097 3.903 6 C -0.115 4.115 7 C -0.090 4.090 8 H 0.100 0.900 9 C 0.067 3.933 10 O -0.365 6.365 11 C 0.474 3.526 12 O -0.541 6.541 13 C 0.049 3.951 14 H 0.051 0.949 15 C -0.120 4.120 16 C -0.539 4.539 17 H 0.058 0.942 18 C 0.021 3.979 19 N -0.911 5.911 20 Si 0.965 3.035 21 H -0.273 1.273 22 H -0.274 1.274 23 H -0.273 1.273 24 C 0.106 3.894 25 H 0.108 0.892 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.117 0.883 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.044 0.956 35 H 0.077 0.923 36 H 0.027 0.973 37 H 0.268 0.732 38 H 0.053 0.947 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.659 -4.260 -2.020 24.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.303 3.697 3 O -0.491 6.491 4 N -0.356 5.356 5 C -0.024 4.024 6 C -0.153 4.153 7 C -0.109 4.109 8 H 0.118 0.882 9 C -0.007 4.007 10 O -0.282 6.282 11 C 0.320 3.680 12 O -0.431 6.431 13 C 0.030 3.970 14 H 0.068 0.932 15 C -0.178 4.178 16 C -0.577 4.577 17 H 0.076 0.924 18 C -0.179 4.179 19 N -0.549 5.549 20 Si 0.790 3.210 21 H -0.198 1.198 22 H -0.199 1.199 23 H -0.198 1.198 24 C -0.018 4.018 25 H 0.127 0.873 26 H 0.121 0.879 27 H 0.122 0.878 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.107 0.893 31 H 0.135 0.865 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.096 0.904 36 H 0.047 0.953 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -23.283 -3.818 -2.155 23.692 hybrid contribution 1.322 -0.145 -0.334 1.372 sum -21.960 -3.963 -2.489 22.454 Atomic orbital electron populations 1.21894 0.87019 1.06638 1.06074 1.21561 0.92411 0.81347 0.74415 1.90724 1.72323 1.32982 1.53090 1.48803 1.06934 1.07390 1.72465 1.22404 0.96364 0.79039 1.04553 1.22744 0.91338 0.97827 1.03375 1.22327 0.92329 0.94213 1.02027 0.88221 1.23139 0.83978 0.95683 0.97894 1.86574 1.15714 1.58435 1.67502 1.24730 0.83908 0.81686 0.77680 1.90470 1.86230 1.30290 1.36118 1.18668 0.87494 0.93774 0.97094 0.93160 1.21557 1.01355 0.95900 0.99021 1.21268 0.90345 1.16497 1.29604 0.92376 1.25676 1.02156 0.95234 0.94816 1.69966 1.27096 1.24220 1.33613 0.85447 0.78524 0.78762 0.78284 1.19849 1.19913 1.19808 1.22182 0.81562 0.97688 1.00354 0.87301 0.87854 0.87836 0.88322 0.88338 0.89291 0.86474 0.90109 0.91553 0.93710 0.90449 0.95333 0.92256 0.92824 0.92225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 10.21 71.23 0.73 -1.01 16 2 C 0.51 11.95 7.96 87.66 0.70 12.65 16 3 O -0.61 -21.60 17.36 -3.05 -0.05 -21.65 16 4 N -0.62 -12.61 3.33 -811.55 -2.70 -15.31 16 5 C 0.10 0.94 5.81 86.76 0.50 1.45 16 6 C -0.12 -1.27 6.43 31.82 0.20 -1.06 16 7 C -0.09 -1.85 3.32 -9.40 -0.03 -1.88 16 8 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 9 C 0.07 1.90 4.90 71.98 0.35 2.25 16 10 O -0.36 -14.18 10.04 -51.37 -0.52 -14.70 16 11 C 0.47 22.49 7.25 71.24 0.52 23.01 16 12 O -0.54 -27.65 15.21 21.97 0.33 -27.32 16 13 C 0.05 2.55 2.74 -12.29 -0.03 2.52 16 14 H 0.05 2.74 8.14 -2.39 -0.02 2.72 16 15 C -0.12 -5.93 8.90 71.98 0.64 -5.29 16 16 C -0.54 -31.06 8.37 25.60 0.21 -30.85 16 17 H 0.06 3.49 6.76 -2.91 -0.02 3.47 16 18 C 0.02 1.17 5.30 84.66 0.45 1.62 16 19 N -0.91 -51.49 11.32 21.45 0.24 -51.25 16 20 Si 0.97 44.26 29.54 68.60 2.03 46.29 16 21 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 23 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 24 C 0.11 2.71 6.30 86.86 0.55 3.26 16 25 H 0.11 0.47 6.60 -2.39 -0.02 0.45 16 26 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.10 0.51 8.02 -2.39 -0.02 0.49 16 29 H 0.10 0.52 8.08 -2.39 -0.02 0.50 16 30 H 0.09 0.92 8.04 -2.39 -0.02 0.90 16 31 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.08 2.14 8.13 -2.39 -0.02 2.12 16 33 H 0.07 1.89 8.03 -2.39 -0.02 1.88 16 34 H 0.04 1.96 8.11 -2.38 -0.02 1.94 16 35 H 0.08 4.10 6.07 -2.38 -0.01 4.09 16 36 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 38 H 0.05 1.72 8.04 -2.38 -0.02 1.70 16 39 H 0.06 1.63 7.96 -2.39 -0.02 1.61 16 Total: -1.00 -75.58 326.62 5.15 -70.43 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: 1.03 Total: 6.84 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: 4.79 Total: 6.67 kcal Atomic # 7 Polarization: -64.11 SS G_CDS: -2.46 Total: -66.56 kcal Atomic # 8 Polarization: -63.43 SS G_CDS: -0.23 Total: -63.67 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -75.58 5.15 -70.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344688387.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.169 kcal (2) G-P(sol) polarization free energy of solvation -75.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds