Wall clock time and date at job start Mon Mar 30 2020 01:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47141 * 2 1 4 4 O 1.45198 * 109.46571 * 120.00112 * 2 1 3 5 5 C 1.34230 * 116.99783 * 269.99551 * 4 2 1 6 6 O 1.20831 * 120.00242 * 0.02562 * 5 4 2 7 7 C 1.50696 * 120.00138 * 180.02562 * 5 4 2 8 8 C 1.53002 * 109.47303 * 179.97438 * 7 5 4 9 9 C 1.50706 * 109.46931 * 179.97438 * 8 7 5 10 10 H 1.07999 * 120.00193 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99398 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99350 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 120.00608 * 0.02562 * 11 9 8 14 14 H 1.48493 * 109.47326 * 270.00340 * 13 11 9 15 15 H 1.48506 * 109.46545 * 30.00090 * 13 11 9 16 16 H 1.48498 * 109.47210 * 149.99801 * 13 11 9 17 17 C 1.53000 * 109.47125 * 239.99714 * 2 1 3 18 18 H 1.09001 * 109.67197 * 300.00079 * 17 2 1 19 19 C 1.53343 * 109.67378 * 179.50235 * 17 2 1 20 20 C 1.52918 * 108.67209 * 172.73649 * 19 17 2 21 21 N 1.45745 * 110.49096 * 50.75409 * 20 19 17 22 22 C 1.33358 * 124.10739 * 340.90094 * 21 20 19 23 23 O 1.21276 * 118.24725 * 182.26324 * 22 21 20 24 24 C 1.50189 * 123.51687 * 2.23222 * 22 21 20 25 25 H 1.08997 * 109.47582 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47331 * 300.00591 * 1 2 3 27 27 H 1.09009 * 109.46802 * 60.00151 * 1 2 3 28 28 H 1.09004 * 109.47476 * 60.00003 * 7 5 4 29 29 H 1.09004 * 109.47043 * 300.00077 * 7 5 4 30 30 H 1.09000 * 109.46986 * 60.00149 * 8 7 5 31 31 H 1.08993 * 109.47662 * 299.99926 * 8 7 5 32 32 H 0.97005 * 119.99661 * 179.97438 * 12 11 9 33 33 H 1.08993 * 109.60287 * 292.49638 * 19 17 2 34 34 H 1.08999 * 109.59841 * 52.98182 * 19 17 2 35 35 H 1.09000 * 109.29922 * 171.06859 * 20 19 17 36 36 H 1.09000 * 109.30150 * 290.43533 * 20 19 17 37 37 H 0.96999 * 117.94980 * 160.92163 * 21 20 19 38 38 H 1.09002 * 109.42341 * 222.30924 * 24 22 21 39 39 H 1.09002 * 109.39717 * 102.56117 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0139 -0.6845 1.1856 5 6 2.2170 0.0640 2.2811 6 8 1.9974 1.2518 2.2506 7 6 2.7191 -0.5770 3.5492 8 6 2.8642 0.4893 4.6368 9 6 3.3657 -0.1519 5.9051 10 1 3.5617 -1.2136 5.9326 11 6 3.5743 0.6170 7.0304 12 7 4.0124 0.0575 8.1371 13 14 3.2346 2.4532 6.9833 14 1 4.4643 3.1736 6.5664 15 1 2.1455 2.7303 6.0125 16 1 2.8237 2.9155 8.3334 17 6 2.0400 -0.7213 -1.2492 18 1 1.6785 -1.7496 -1.2525 19 6 3.5734 -0.7132 -1.2602 20 6 4.0594 -1.5911 -2.4140 21 7 3.3936 -1.2170 -3.6553 22 6 2.2565 -0.5227 -3.7142 23 8 1.7725 -0.3052 -4.8047 24 6 1.5426 0.0038 -2.5022 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 3.6882 -1.0401 3.3633 29 1 2.0101 -1.3372 3.8774 30 1 1.8953 0.9527 4.8229 31 1 3.5733 1.2491 4.3085 32 1 4.1594 0.5985 8.9287 33 1 3.9327 0.3063 -1.3999 34 1 3.9479 -1.1093 -0.3163 35 1 5.1360 -1.4683 -2.5315 36 1 3.8416 -2.6352 -2.1888 37 1 3.8030 -1.4903 -4.4911 38 1 0.4707 -0.1594 -2.6135 39 1 1.7366 1.0719 -2.4033 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345990480.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:00 Heat of formation + Delta-G solvation = -149.310792 kcal Electronic energy + Delta-G solvation = -20628.020051 eV Core-core repulsion = 17341.697196 eV Total energy + Delta-G solvation = -3286.322855 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.85176 -40.05566 -37.47361 -36.15207 -34.27954 -33.65536 -31.49143 -30.63767 -29.65123 -26.67149 -25.51476 -23.29500 -22.31360 -20.82776 -20.00286 -19.45497 -17.79961 -17.53157 -16.86929 -16.31600 -16.03699 -15.91849 -15.31430 -14.76387 -14.39707 -14.22942 -14.01039 -13.73256 -13.50291 -13.13321 -12.78735 -12.62458 -12.32856 -12.16632 -11.80048 -11.53098 -11.39250 -11.31691 -11.06601 -10.95053 -10.57657 -10.35119 -10.22114 -10.06990 -9.92982 -9.71097 -9.43875 -9.29982 -8.59434 -6.10931 -4.11039 2.32255 2.63194 2.85695 2.97300 3.31101 3.38504 3.47026 4.09825 4.22184 4.35834 4.42654 4.43168 4.83420 4.87706 4.91160 5.01573 5.08569 5.17329 5.23852 5.26321 5.40092 5.44625 5.59046 5.66563 5.74746 5.84348 5.93743 5.98631 6.01478 6.40751 6.45171 6.75508 6.97090 7.19149 7.26495 7.66878 7.87639 8.15907 8.42911 8.91300 9.50830 11.01638 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.037956 B = 0.003482 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.512843 B = 8038.682875 C = 8316.319690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.088 3.912 3 H 0.086 0.914 4 O -0.356 6.356 5 C 0.457 3.543 6 O -0.510 6.510 7 C -0.096 4.096 8 C -0.002 4.002 9 C -0.528 4.528 10 H 0.075 0.925 11 C 0.071 3.929 12 N -0.900 5.900 13 Si 0.877 3.123 14 H -0.276 1.276 15 H -0.262 1.262 16 H -0.287 1.287 17 C -0.086 4.086 18 H 0.092 0.908 19 C -0.137 4.137 20 C 0.110 3.890 21 N -0.720 5.720 22 C 0.524 3.476 23 O -0.561 6.561 24 C -0.130 4.130 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.025 0.975 31 H 0.021 0.979 32 H 0.265 0.735 33 H 0.074 0.926 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.399 0.601 38 H 0.107 0.893 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.133 -3.606 -21.117 21.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.033 3.967 3 H 0.104 0.896 4 O -0.275 6.275 5 C 0.301 3.699 6 O -0.397 6.397 7 C -0.133 4.133 8 C -0.039 4.039 9 C -0.566 4.566 10 H 0.093 0.907 11 C -0.131 4.131 12 N -0.538 5.538 13 Si 0.704 3.296 14 H -0.202 1.202 15 H -0.186 1.186 16 H -0.213 1.213 17 C -0.105 4.105 18 H 0.110 0.890 19 C -0.174 4.174 20 C -0.014 4.014 21 N -0.372 5.372 22 C 0.311 3.689 23 O -0.439 6.439 24 C -0.170 4.170 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.116 0.884 29 H 0.117 0.883 30 H 0.044 0.956 31 H 0.039 0.961 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.116 0.884 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.234 0.766 38 H 0.125 0.875 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.521 -3.017 -21.301 21.661 hybrid contribution 0.089 0.933 -0.112 0.944 sum -2.432 -2.084 -21.413 21.651 Atomic orbital electron populations 1.22252 0.94310 1.03165 1.03277 1.22574 0.94496 0.97138 0.82519 0.89603 1.86602 1.77394 1.42984 1.20472 1.24743 0.73653 0.86278 0.85213 1.90616 1.48028 1.17105 1.83954 1.21544 1.02439 1.01357 0.88000 1.19477 0.97918 0.93748 0.92792 1.21029 1.44907 0.96862 0.93766 0.90658 1.24959 0.94263 0.98643 0.95241 1.69904 1.45788 1.36235 1.01910 0.86804 0.79604 0.85741 0.77448 1.20164 1.18609 1.21300 1.21346 0.95919 1.01064 0.92175 0.89002 1.21967 0.95044 1.01113 0.99300 1.21422 0.97233 0.99112 0.83614 1.45519 1.25116 1.56313 1.10297 1.20076 0.80463 0.77326 0.91011 1.90768 1.65249 1.58388 1.29536 1.21741 1.01861 1.02139 0.91237 0.91423 0.91527 0.90775 0.88381 0.88330 0.95644 0.96085 0.92572 0.90774 0.88443 0.90185 0.91151 0.76595 0.87506 0.87776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.73 9.23 37.16 0.34 -1.39 16 2 C 0.09 0.97 2.12 -26.73 -0.06 0.91 16 3 H 0.09 1.05 7.16 -51.93 -0.37 0.68 16 4 O -0.36 -4.88 9.14 -39.26 -0.36 -5.24 16 5 C 0.46 7.83 7.93 36.00 0.29 8.11 16 6 O -0.51 -10.17 15.20 -18.75 -0.29 -10.45 16 7 C -0.10 -1.76 5.75 -27.88 -0.16 -1.92 16 8 C 0.00 -0.04 3.33 -27.88 -0.09 -0.14 16 9 C -0.53 -14.53 9.66 -34.44 -0.33 -14.86 16 10 H 0.08 2.17 7.99 -52.49 -0.42 1.75 16 11 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 12 N -0.90 -27.18 13.96 55.43 0.77 -26.40 16 13 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.26 -6.42 6.54 56.52 0.37 -6.05 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 17 C -0.09 -0.72 2.06 -90.40 -0.19 -0.90 16 18 H 0.09 0.73 8.13 -51.93 -0.42 0.31 16 19 C -0.14 -1.03 5.26 -26.60 -0.14 -1.17 16 20 C 0.11 0.64 7.17 -4.49 -0.03 0.61 16 21 N -0.72 -5.43 5.45 -61.39 -0.33 -5.77 16 22 C 0.52 5.33 7.71 -11.86 -0.09 5.24 16 23 O -0.56 -7.98 17.78 5.56 0.10 -7.88 16 24 C -0.13 -1.07 4.67 -28.09 -0.13 -1.20 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.07 0.59 6.72 -51.92 -0.35 0.24 16 28 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 29 H 0.10 1.69 8.14 -51.93 -0.42 1.27 16 30 H 0.03 0.62 7.15 -51.93 -0.37 0.25 16 31 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16 32 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 33 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 34 H 0.10 0.80 7.52 -51.93 -0.39 0.41 16 35 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.40 2.60 8.80 -40.82 -0.36 2.24 16 38 H 0.11 0.81 7.10 -51.93 -0.37 0.44 16 39 H 0.10 0.80 8.10 -51.93 -0.42 0.38 16 LS Contribution 321.60 15.07 4.85 4.85 Total: -1.00 -33.93 321.60 -6.61 -40.54 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -5.99 Total: -1.96 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -0.69 Total: -4.77 kcal Atomic # 7 Polarization: -32.61 SS G_CDS: 0.44 Total: -32.17 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.54 Total: -23.58 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.93 -6.61 -40.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345990480.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.771 kcal (2) G-P(sol) polarization free energy of solvation -33.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds