Wall clock time and date at job start Mon Mar 30 2020 01:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47141 * 2 1 4 4 O 1.45198 * 109.46571 * 120.00112 * 2 1 3 5 5 C 1.34230 * 116.99783 * 269.99551 * 4 2 1 6 6 O 1.20831 * 120.00242 * 0.02562 * 5 4 2 7 7 C 1.50696 * 120.00138 * 180.02562 * 5 4 2 8 8 C 1.53002 * 109.47303 * 179.97438 * 7 5 4 9 9 C 1.50706 * 109.46931 * 179.97438 * 8 7 5 10 10 H 1.07999 * 120.00193 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99398 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99350 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 120.00608 * 0.02562 * 11 9 8 14 14 H 1.48493 * 109.47326 * 270.00340 * 13 11 9 15 15 H 1.48506 * 109.46545 * 30.00090 * 13 11 9 16 16 H 1.48498 * 109.47210 * 149.99801 * 13 11 9 17 17 C 1.53000 * 109.47125 * 239.99714 * 2 1 3 18 18 H 1.09001 * 109.67197 * 300.00079 * 17 2 1 19 19 C 1.53343 * 109.67378 * 179.50235 * 17 2 1 20 20 C 1.52918 * 108.67209 * 172.73649 * 19 17 2 21 21 N 1.45745 * 110.49096 * 50.75409 * 20 19 17 22 22 C 1.33358 * 124.10739 * 340.90094 * 21 20 19 23 23 O 1.21276 * 118.24725 * 182.26324 * 22 21 20 24 24 C 1.50189 * 123.51687 * 2.23222 * 22 21 20 25 25 H 1.08997 * 109.47582 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47331 * 300.00591 * 1 2 3 27 27 H 1.09009 * 109.46802 * 60.00151 * 1 2 3 28 28 H 1.09004 * 109.47476 * 60.00003 * 7 5 4 29 29 H 1.09004 * 109.47043 * 300.00077 * 7 5 4 30 30 H 1.09000 * 109.46986 * 60.00149 * 8 7 5 31 31 H 1.08993 * 109.47662 * 299.99926 * 8 7 5 32 32 H 0.97005 * 119.99661 * 179.97438 * 12 11 9 33 33 H 1.08993 * 109.60287 * 292.49638 * 19 17 2 34 34 H 1.08999 * 109.59841 * 52.98182 * 19 17 2 35 35 H 1.09000 * 109.29922 * 171.06859 * 20 19 17 36 36 H 1.09000 * 109.30150 * 290.43533 * 20 19 17 37 37 H 0.96999 * 117.94980 * 160.92163 * 21 20 19 38 38 H 1.09002 * 109.42341 * 222.30924 * 24 22 21 39 39 H 1.09002 * 109.39717 * 102.56117 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0139 -0.6845 1.1856 5 6 2.2170 0.0640 2.2811 6 8 1.9974 1.2518 2.2506 7 6 2.7191 -0.5770 3.5492 8 6 2.8642 0.4893 4.6368 9 6 3.3657 -0.1519 5.9051 10 1 3.5617 -1.2136 5.9326 11 6 3.5743 0.6170 7.0304 12 7 4.0124 0.0575 8.1371 13 14 3.2346 2.4532 6.9833 14 1 4.4643 3.1736 6.5664 15 1 2.1455 2.7303 6.0125 16 1 2.8237 2.9155 8.3334 17 6 2.0400 -0.7213 -1.2492 18 1 1.6785 -1.7496 -1.2525 19 6 3.5734 -0.7132 -1.2602 20 6 4.0594 -1.5911 -2.4140 21 7 3.3936 -1.2170 -3.6553 22 6 2.2565 -0.5227 -3.7142 23 8 1.7725 -0.3052 -4.8047 24 6 1.5426 0.0038 -2.5022 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 3.6882 -1.0401 3.3633 29 1 2.0101 -1.3372 3.8774 30 1 1.8953 0.9527 4.8229 31 1 3.5733 1.2491 4.3085 32 1 4.1594 0.5985 8.9287 33 1 3.9327 0.3063 -1.3999 34 1 3.9479 -1.1093 -0.3163 35 1 5.1360 -1.4683 -2.5315 36 1 3.8416 -2.6352 -2.1888 37 1 3.8030 -1.4903 -4.4911 38 1 0.4707 -0.1594 -2.6135 39 1 1.7366 1.0719 -2.4033 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345990480.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:59 Heat of formation + Delta-G solvation = -172.171202 kcal Electronic energy + Delta-G solvation = -20629.011352 eV Core-core repulsion = 17341.697196 eV Total energy + Delta-G solvation = -3287.314156 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.80416 -41.10734 -38.49209 -37.14771 -35.60725 -35.09642 -33.39252 -31.40486 -30.40517 -28.40999 -26.33208 -24.17190 -23.67869 -21.95205 -21.32497 -20.23098 -19.32777 -18.42629 -18.31563 -17.33522 -17.25663 -16.85068 -16.30832 -16.23313 -15.50780 -15.27309 -15.08515 -14.78308 -14.69210 -14.31527 -14.14566 -13.93175 -13.38454 -13.20497 -12.92879 -12.85590 -12.61724 -12.22975 -12.10964 -12.06955 -12.00206 -11.79254 -11.75472 -11.51579 -11.43895 -11.32289 -10.81597 -10.77582 -10.08317 -8.30849 -6.34716 1.27574 1.34982 1.37687 1.50669 1.55186 1.71239 2.33748 2.35289 3.04924 3.36011 3.55357 3.65163 3.78167 3.94533 4.14057 4.14744 4.24359 4.35558 4.42270 4.42990 4.44595 4.66380 4.73382 4.82140 4.82768 4.89506 4.95235 5.08068 5.17450 5.22972 5.30472 5.39205 5.49510 5.62209 5.80752 6.22746 6.30158 6.71600 6.87020 7.16667 7.30612 8.84699 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.037956 B = 0.003482 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.512843 B = 8038.682875 C = 8316.319690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.083 3.917 3 H 0.075 0.925 4 O -0.346 6.346 5 C 0.469 3.531 6 O -0.541 6.541 7 C -0.092 4.092 8 C 0.002 3.998 9 C -0.530 4.530 10 H 0.052 0.948 11 C 0.014 3.986 12 N -0.943 5.943 13 Si 0.938 3.062 14 H -0.267 1.267 15 H -0.258 1.258 16 H -0.281 1.281 17 C -0.076 4.076 18 H 0.102 0.898 19 C -0.139 4.139 20 C 0.112 3.888 21 N -0.711 5.711 22 C 0.521 3.479 23 O -0.608 6.608 24 C -0.125 4.125 25 H 0.078 0.922 26 H 0.044 0.956 27 H 0.096 0.904 28 H 0.116 0.884 29 H 0.111 0.889 30 H 0.015 0.985 31 H 0.016 0.984 32 H 0.268 0.732 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.085 0.915 37 H 0.405 0.595 38 H 0.115 0.885 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.156 -3.690 -22.540 22.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.028 3.972 3 H 0.093 0.907 4 O -0.263 6.263 5 C 0.315 3.685 6 O -0.431 6.431 7 C -0.130 4.130 8 C -0.036 4.036 9 C -0.568 4.568 10 H 0.070 0.930 11 C -0.184 4.184 12 N -0.583 5.583 13 Si 0.762 3.238 14 H -0.192 1.192 15 H -0.182 1.182 16 H -0.206 1.206 17 C -0.094 4.094 18 H 0.120 0.880 19 C -0.177 4.177 20 C -0.011 4.011 21 N -0.361 5.361 22 C 0.309 3.691 23 O -0.491 6.491 24 C -0.165 4.165 25 H 0.097 0.903 26 H 0.063 0.937 27 H 0.115 0.885 28 H 0.134 0.866 29 H 0.130 0.870 30 H 0.033 0.967 31 H 0.034 0.966 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.112 0.888 35 H 0.119 0.881 36 H 0.103 0.897 37 H 0.241 0.759 38 H 0.133 0.867 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.517 -3.139 -22.729 23.082 hybrid contribution 0.123 0.857 0.293 0.914 sum -2.394 -2.282 -22.436 22.678 Atomic orbital electron populations 1.22276 0.93401 1.03923 1.03320 1.22865 0.95310 0.96807 0.82171 0.90728 1.86556 1.76914 1.42383 1.20418 1.24256 0.73011 0.85612 0.85668 1.90612 1.49538 1.18362 1.84598 1.21328 1.04091 0.99988 0.87573 1.19317 0.96736 0.94790 0.92759 1.21362 1.43962 0.96064 0.95418 0.92971 1.25802 0.94376 1.03169 0.95038 1.70024 1.47518 1.38025 1.02769 0.85835 0.79752 0.80499 0.77680 1.19232 1.18221 1.20642 1.21277 0.96507 1.01105 0.90557 0.88016 1.21986 0.94391 1.01383 0.99921 1.21555 0.98162 0.99363 0.82030 1.45538 1.24241 1.54984 1.11384 1.20339 0.80839 0.77162 0.90734 1.90751 1.66708 1.60482 1.31162 1.21711 1.02192 1.02316 0.90235 0.90300 0.93725 0.88529 0.86612 0.87050 0.96686 0.96551 0.92345 0.91133 0.88763 0.88063 0.89652 0.75934 0.86680 0.87278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.11 9.23 71.98 0.66 -2.44 16 2 C 0.08 1.67 2.12 30.59 0.06 1.73 16 3 H 0.07 1.72 7.16 -2.39 -0.02 1.70 16 4 O -0.35 -8.75 9.14 -51.41 -0.47 -9.22 16 5 C 0.47 15.37 7.93 71.23 0.56 15.93 16 6 O -0.54 -21.05 15.20 21.95 0.33 -20.72 16 7 C -0.09 -3.26 5.75 29.85 0.17 -3.09 16 8 C 0.00 0.07 3.33 29.85 0.10 0.17 16 9 C -0.53 -29.27 9.66 25.60 0.25 -29.03 16 10 H 0.05 3.04 7.99 -2.91 -0.02 3.02 16 11 C 0.01 0.81 5.47 84.66 0.46 1.27 16 12 N -0.94 -57.59 13.96 21.45 0.30 -57.29 16 13 Si 0.94 44.75 27.47 68.60 1.88 46.64 16 14 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 15 H -0.26 -12.06 6.54 99.48 0.65 -11.41 16 16 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 17 C -0.08 -1.07 2.06 -10.65 -0.02 -1.09 16 18 H 0.10 1.29 8.13 -2.39 -0.02 1.27 16 19 C -0.14 -1.75 5.26 30.68 0.16 -1.59 16 20 C 0.11 0.96 7.17 86.49 0.62 1.58 16 21 N -0.71 -9.13 5.45 -467.32 -2.55 -11.68 16 22 C 0.52 9.76 7.71 87.72 0.68 10.44 16 23 O -0.61 -16.91 17.78 -3.02 -0.05 -16.97 16 24 C -0.12 -1.80 4.67 29.71 0.14 -1.66 16 25 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.10 1.30 6.72 -2.38 -0.02 1.28 16 28 H 0.12 3.67 8.14 -2.39 -0.02 3.65 16 29 H 0.11 3.65 8.14 -2.38 -0.02 3.63 16 30 H 0.01 0.72 7.15 -2.39 -0.02 0.70 16 31 H 0.02 0.76 7.53 -2.39 -0.02 0.75 16 32 H 0.27 15.28 8.31 -92.70 -0.77 14.51 16 33 H 0.07 0.96 8.12 -2.39 -0.02 0.94 16 34 H 0.09 1.29 7.52 -2.39 -0.02 1.28 16 35 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.40 4.47 8.80 -92.71 -0.82 3.65 16 38 H 0.12 1.49 7.10 -2.39 -0.02 1.47 16 39 H 0.11 1.49 8.10 -2.39 -0.02 1.47 16 Total: -1.00 -73.20 321.60 3.48 -69.73 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: 0.18 Total: 7.27 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: 3.85 Total: -7.77 kcal Atomic # 7 Polarization: -66.72 SS G_CDS: -2.25 Total: -68.96 kcal Atomic # 8 Polarization: -46.71 SS G_CDS: -0.19 Total: -46.90 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.88 Total: 46.64 kcal Total: -73.20 3.48 -69.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345990480.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.445 kcal (2) G-P(sol) polarization free energy of solvation -73.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds