Wall clock time and date at job start Mon Mar 30 2020 01:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 O 1.45206 * 109.47226 * 239.99460 * 2 1 3 5 5 C 1.34235 * 116.99354 * 90.00249 * 4 2 1 6 6 O 1.20826 * 120.00385 * 359.97438 * 5 4 2 7 7 C 1.50704 * 119.99606 * 180.02562 * 5 4 2 8 8 C 1.53005 * 109.46811 * 179.97438 * 7 5 4 9 9 C 1.50695 * 109.46946 * 180.02562 * 8 7 5 10 10 H 1.08007 * 120.00112 * 359.97438 * 9 8 7 11 11 C 1.37880 * 120.00026 * 179.97438 * 9 8 7 12 12 N 1.31509 * 119.99769 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 119.99826 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47700 * 359.97438 * 13 11 9 15 15 H 1.48508 * 109.47126 * 120.00006 * 13 11 9 16 16 H 1.48500 * 109.47429 * 239.99922 * 13 11 9 17 17 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 18 18 H 1.08995 * 109.66808 * 304.49794 * 17 2 1 19 19 C 1.53343 * 109.67407 * 183.96763 * 17 2 1 20 20 C 1.52933 * 108.66208 * 172.72080 * 19 17 2 21 21 N 1.45754 * 110.48167 * 50.78201 * 20 19 17 22 22 C 1.33352 * 124.10089 * 340.88755 * 21 20 19 23 23 O 1.21290 * 118.24063 * 182.22431 * 22 21 20 24 24 C 1.50175 * 123.51380 * 2.24799 * 22 21 20 25 25 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 26 26 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47109 * 299.99718 * 7 5 4 29 29 H 1.08998 * 109.47275 * 60.00156 * 7 5 4 30 30 H 1.09002 * 109.46702 * 299.99447 * 8 7 5 31 31 H 1.08998 * 109.47070 * 60.00035 * 8 7 5 32 32 H 0.97005 * 119.99721 * 180.02562 * 12 11 9 33 33 H 1.09008 * 109.60263 * 292.49119 * 19 17 2 34 34 H 1.08997 * 109.60707 * 52.97110 * 19 17 2 35 35 H 1.08999 * 109.31556 * 290.46128 * 20 19 17 36 36 H 1.09007 * 109.29152 * 171.08454 * 20 19 17 37 37 H 0.96993 * 117.94667 * 160.90599 * 21 20 19 38 38 H 1.09000 * 109.39828 * 222.29352 * 24 22 21 39 39 H 1.08994 * 109.33615 * 102.50169 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6846 -1.1855 5 6 2.2172 0.0639 -2.2811 6 8 1.9974 1.2516 -2.2507 7 6 2.7183 -0.5774 -3.5495 8 6 2.8624 0.4887 -4.6375 9 6 3.3629 -0.1526 -5.9060 10 1 3.5591 -1.2143 -5.9333 11 6 3.5705 0.6160 -7.0317 12 7 3.3312 1.9087 -6.9985 13 14 4.1916 -0.1789 -8.6038 14 1 4.3822 -1.6346 -8.3808 15 1 3.2002 0.0304 -9.6895 16 1 5.4868 0.4357 -8.9911 17 6 2.0400 -0.7213 1.2493 18 1 1.6142 -0.2586 2.1396 19 6 3.5702 -0.6381 1.3049 20 6 4.0425 -1.2025 2.6455 21 7 3.4489 -2.5119 2.8852 22 6 2.3612 -2.9653 2.2610 23 8 1.9337 -4.0568 2.5726 24 6 1.6375 -2.1970 1.1927 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.6872 -1.0410 -3.3640 29 1 2.0088 -1.3370 -3.8775 30 1 1.8933 0.9519 -4.8229 31 1 3.5717 1.2487 -4.3097 32 1 3.4769 2.4494 -7.7905 33 1 3.9981 -1.2227 0.4904 34 1 3.8834 0.4021 1.2153 35 1 3.7506 -0.5226 3.4459 36 1 5.1285 -1.2958 2.6344 37 1 3.8713 -3.0896 3.5399 38 1 0.5623 -2.2852 1.3487 39 1 1.8964 -2.6058 0.2160 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345990483.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:04 Heat of formation + Delta-G solvation = -152.057447 kcal Electronic energy + Delta-G solvation = -20738.080841 eV Core-core repulsion = 17451.638883 eV Total energy + Delta-G solvation = -3286.441958 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.76152 -39.88285 -37.35821 -36.02711 -34.01342 -33.60291 -31.22316 -30.50070 -29.64811 -26.21438 -25.42156 -23.32517 -22.49660 -20.80452 -19.98666 -19.22757 -17.67645 -17.37768 -16.43083 -16.16175 -15.93518 -15.71168 -15.22409 -14.62543 -14.50821 -14.23339 -13.89083 -13.70951 -13.30084 -13.03289 -12.67341 -12.31979 -12.18431 -12.07517 -11.68999 -11.38537 -11.27095 -11.12000 -11.00188 -10.90082 -10.64183 -10.36014 -10.08547 -9.93070 -9.88264 -9.57325 -9.35328 -9.18756 -8.40569 -6.04239 -4.09037 2.47257 2.79091 3.04369 3.06043 3.29123 3.36860 3.40505 4.18364 4.28677 4.41186 4.43692 4.50048 4.92953 4.98354 5.04485 5.14812 5.19233 5.26663 5.29804 5.31525 5.52836 5.58088 5.70315 5.75332 5.79693 5.99622 6.07606 6.09952 6.18346 6.51234 6.63434 6.91813 7.08156 7.63793 7.70109 7.95144 8.00630 8.22956 8.38743 8.98353 9.55383 11.06772 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.028949 B = 0.003583 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.979535 B = 7811.896044 C = 8115.130007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.087 3.913 3 H 0.088 0.912 4 O -0.360 6.360 5 C 0.457 3.543 6 O -0.505 6.505 7 C -0.104 4.104 8 C 0.033 3.967 9 C -0.528 4.528 10 H 0.059 0.941 11 C 0.059 3.941 12 N -0.889 5.889 13 Si 0.895 3.105 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.284 1.284 17 C -0.085 4.085 18 H 0.094 0.906 19 C -0.137 4.137 20 C 0.112 3.888 21 N -0.722 5.722 22 C 0.522 3.478 23 O -0.562 6.562 24 C -0.130 4.130 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.025 0.975 31 H 0.025 0.975 32 H 0.261 0.739 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.397 0.603 38 H 0.102 0.898 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.631 -4.671 19.917 20.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.032 3.968 3 H 0.106 0.894 4 O -0.278 6.278 5 C 0.300 3.700 6 O -0.391 6.391 7 C -0.142 4.142 8 C -0.004 4.004 9 C -0.566 4.566 10 H 0.077 0.923 11 C -0.143 4.143 12 N -0.528 5.528 13 Si 0.722 3.278 14 H -0.196 1.196 15 H -0.209 1.209 16 H -0.210 1.210 17 C -0.103 4.103 18 H 0.112 0.888 19 C -0.175 4.175 20 C -0.013 4.013 21 N -0.375 5.375 22 C 0.310 3.690 23 O -0.441 6.441 24 C -0.170 4.170 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.071 0.929 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.232 0.768 38 H 0.120 0.880 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.041 -4.543 19.832 20.372 hybrid contribution 0.534 -0.254 -0.601 0.843 sum -0.506 -4.797 19.231 19.826 Atomic orbital electron populations 1.22228 0.94398 1.03095 1.03194 1.22562 0.94424 0.97115 0.82692 0.89400 1.86606 1.77558 1.43071 1.20562 1.24753 0.73755 0.86361 0.85083 1.90626 1.47664 1.17014 1.83814 1.21766 1.01697 1.01975 0.88746 1.19015 0.98525 0.92455 0.90408 1.21197 1.44999 0.94746 0.95707 0.92271 1.25017 0.95469 0.94811 0.99007 1.70001 1.48385 1.05042 1.29353 0.86497 0.78498 0.79524 0.83238 1.19635 1.20946 1.20966 1.21444 0.96119 0.95511 0.97240 0.88819 1.21985 0.95247 1.02988 0.97264 1.21392 0.98292 0.83877 0.97712 1.45505 1.29397 1.18978 1.43577 1.20280 0.80052 0.86380 0.82295 1.90760 1.65786 1.22279 1.65238 1.21732 1.01548 0.94359 0.99350 0.91490 0.91051 0.91403 0.89062 0.88993 0.95619 0.95634 0.92900 0.89812 0.89452 0.91584 0.90307 0.76753 0.87984 0.86679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.81 9.32 37.16 0.35 -1.47 16 2 C 0.09 1.01 2.26 -26.73 -0.06 0.95 16 3 H 0.09 1.11 7.16 -51.93 -0.37 0.74 16 4 O -0.36 -5.20 8.49 -39.27 -0.33 -5.53 16 5 C 0.46 8.36 7.93 36.01 0.29 8.65 16 6 O -0.50 -10.78 15.20 -18.75 -0.29 -11.06 16 7 C -0.10 -2.05 5.75 -27.88 -0.16 -2.21 16 8 C 0.03 0.85 4.26 -27.88 -0.12 0.73 16 9 C -0.53 -14.55 9.11 -34.44 -0.31 -14.86 16 10 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 11 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 12 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 13 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 14 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 C -0.08 -0.73 2.10 -90.40 -0.19 -0.92 16 18 H 0.09 0.65 8.13 -51.93 -0.42 0.23 16 19 C -0.14 -1.08 5.13 -26.59 -0.14 -1.22 16 20 C 0.11 0.68 7.17 -4.48 -0.03 0.64 16 21 N -0.72 -5.99 5.45 -61.38 -0.33 -6.33 16 22 C 0.52 5.93 7.71 -11.87 -0.09 5.84 16 23 O -0.56 -8.71 17.78 5.55 0.10 -8.61 16 24 C -0.13 -1.29 4.77 -28.10 -0.13 -1.43 16 25 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.66 6.85 -51.93 -0.36 0.30 16 28 H 0.09 1.64 8.14 -51.93 -0.42 1.21 16 29 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 30 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 31 H 0.03 0.71 8.10 -51.93 -0.42 0.29 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.08 0.79 8.00 -51.92 -0.42 0.37 16 34 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.40 2.88 8.80 -40.82 -0.36 2.52 16 38 H 0.10 0.95 7.16 -51.93 -0.37 0.58 16 39 H 0.12 1.27 7.21 -51.93 -0.37 0.89 16 LS Contribution 324.58 15.07 4.89 4.89 Total: -1.00 -34.04 324.58 -6.96 -41.00 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -6.01 Total: -0.90 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -0.70 Total: -3.72 kcal Atomic # 7 Polarization: -32.66 SS G_CDS: 0.40 Total: -32.26 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.52 Total: -25.21 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.04 -6.96 -41.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345990483.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.059 kcal (2) G-P(sol) polarization free energy of solvation -34.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds