Wall clock time and date at job start Mon Mar 30 2020 01:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 O 1.45206 * 109.47226 * 239.99460 * 2 1 3 5 5 C 1.34235 * 116.99354 * 90.00249 * 4 2 1 6 6 O 1.20826 * 120.00385 * 359.97438 * 5 4 2 7 7 C 1.50704 * 119.99606 * 180.02562 * 5 4 2 8 8 C 1.53005 * 109.46811 * 179.97438 * 7 5 4 9 9 C 1.50695 * 109.46946 * 180.02562 * 8 7 5 10 10 H 1.08007 * 120.00112 * 359.97438 * 9 8 7 11 11 C 1.37880 * 120.00026 * 179.97438 * 9 8 7 12 12 N 1.31509 * 119.99769 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 119.99826 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47700 * 359.97438 * 13 11 9 15 15 H 1.48508 * 109.47126 * 120.00006 * 13 11 9 16 16 H 1.48500 * 109.47429 * 239.99922 * 13 11 9 17 17 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 18 18 H 1.08995 * 109.66808 * 304.49794 * 17 2 1 19 19 C 1.53343 * 109.67407 * 183.96763 * 17 2 1 20 20 C 1.52933 * 108.66208 * 172.72080 * 19 17 2 21 21 N 1.45754 * 110.48167 * 50.78201 * 20 19 17 22 22 C 1.33352 * 124.10089 * 340.88755 * 21 20 19 23 23 O 1.21290 * 118.24063 * 182.22431 * 22 21 20 24 24 C 1.50175 * 123.51380 * 2.24799 * 22 21 20 25 25 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 26 26 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47109 * 299.99718 * 7 5 4 29 29 H 1.08998 * 109.47275 * 60.00156 * 7 5 4 30 30 H 1.09002 * 109.46702 * 299.99447 * 8 7 5 31 31 H 1.08998 * 109.47070 * 60.00035 * 8 7 5 32 32 H 0.97005 * 119.99721 * 180.02562 * 12 11 9 33 33 H 1.09008 * 109.60263 * 292.49119 * 19 17 2 34 34 H 1.08997 * 109.60707 * 52.97110 * 19 17 2 35 35 H 1.08999 * 109.31556 * 290.46128 * 20 19 17 36 36 H 1.09007 * 109.29152 * 171.08454 * 20 19 17 37 37 H 0.96993 * 117.94667 * 160.90599 * 21 20 19 38 38 H 1.09000 * 109.39828 * 222.29352 * 24 22 21 39 39 H 1.08994 * 109.33615 * 102.50169 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6846 -1.1855 5 6 2.2172 0.0639 -2.2811 6 8 1.9974 1.2516 -2.2507 7 6 2.7183 -0.5774 -3.5495 8 6 2.8624 0.4887 -4.6375 9 6 3.3629 -0.1526 -5.9060 10 1 3.5591 -1.2143 -5.9333 11 6 3.5705 0.6160 -7.0317 12 7 3.3312 1.9087 -6.9985 13 14 4.1916 -0.1789 -8.6038 14 1 4.3822 -1.6346 -8.3808 15 1 3.2002 0.0304 -9.6895 16 1 5.4868 0.4357 -8.9911 17 6 2.0400 -0.7213 1.2493 18 1 1.6142 -0.2586 2.1396 19 6 3.5702 -0.6381 1.3049 20 6 4.0425 -1.2025 2.6455 21 7 3.4489 -2.5119 2.8852 22 6 2.3612 -2.9653 2.2610 23 8 1.9337 -4.0568 2.5726 24 6 1.6375 -2.1970 1.1927 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.6872 -1.0410 -3.3640 29 1 2.0088 -1.3370 -3.8775 30 1 1.8933 0.9519 -4.8229 31 1 3.5717 1.2487 -4.3097 32 1 3.4769 2.4494 -7.7905 33 1 3.9981 -1.2227 0.4904 34 1 3.8834 0.4021 1.2153 35 1 3.7506 -0.5226 3.4459 36 1 5.1285 -1.2958 2.6344 37 1 3.8713 -3.0896 3.5399 38 1 0.5623 -2.2852 1.3487 39 1 1.8964 -2.6058 0.2160 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345990483.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:03 Heat of formation + Delta-G solvation = -174.981555 kcal Electronic energy + Delta-G solvation = -20739.074905 eV Core-core repulsion = 17451.638883 eV Total energy + Delta-G solvation = -3287.436022 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.80516 -41.03162 -38.47244 -37.08861 -35.62999 -34.93248 -33.09877 -31.36682 -30.45518 -28.07467 -26.27815 -24.56867 -23.72918 -22.02719 -21.29116 -20.08266 -19.06876 -18.43187 -18.01245 -17.32302 -17.06422 -16.88784 -16.46668 -16.29158 -15.41764 -15.17359 -14.99268 -14.78744 -14.36322 -14.23090 -14.07416 -13.88223 -13.30381 -13.16708 -12.87041 -12.85023 -12.59262 -12.47323 -12.21191 -11.99509 -11.91181 -11.81229 -11.72751 -11.43568 -11.31980 -11.18841 -10.78183 -10.57994 -10.05335 -8.19802 -6.33087 1.31139 1.43880 1.44280 1.57664 1.60400 1.79066 2.37107 2.43557 3.14323 3.39724 3.53950 3.71327 3.82403 3.94615 4.13658 4.29611 4.31035 4.43728 4.44875 4.47551 4.49363 4.70857 4.75859 4.85009 4.90330 4.94535 4.97461 5.03777 5.22507 5.31504 5.46013 5.52644 5.57248 5.81813 5.85079 6.14623 6.33279 6.83100 6.92232 7.21011 7.37275 8.92911 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.028949 B = 0.003583 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.979535 B = 7811.896044 C = 8115.130007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.081 3.919 3 H 0.079 0.921 4 O -0.348 6.348 5 C 0.467 3.533 6 O -0.542 6.542 7 C -0.097 4.097 8 C 0.039 3.961 9 C -0.544 4.544 10 H 0.075 0.925 11 C -0.002 4.002 12 N -0.935 5.935 13 Si 0.972 3.028 14 H -0.255 1.255 15 H -0.281 1.281 16 H -0.280 1.280 17 C -0.074 4.074 18 H 0.122 0.878 19 C -0.140 4.140 20 C 0.113 3.887 21 N -0.712 5.712 22 C 0.520 3.480 23 O -0.611 6.611 24 C -0.127 4.127 25 H 0.040 0.960 26 H 0.099 0.901 27 H 0.076 0.924 28 H 0.114 0.886 29 H 0.111 0.889 30 H -0.011 1.011 31 H -0.009 1.009 32 H 0.264 0.736 33 H 0.066 0.934 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.404 0.596 38 H 0.108 0.892 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.094 -5.794 21.007 21.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.026 3.974 3 H 0.097 0.903 4 O -0.265 6.265 5 C 0.313 3.687 6 O -0.432 6.432 7 C -0.134 4.134 8 C 0.002 3.998 9 C -0.581 4.581 10 H 0.094 0.906 11 C -0.200 4.200 12 N -0.575 5.575 13 Si 0.796 3.204 14 H -0.178 1.178 15 H -0.207 1.207 16 H -0.206 1.206 17 C -0.092 4.092 18 H 0.140 0.860 19 C -0.178 4.178 20 C -0.010 4.010 21 N -0.362 5.362 22 C 0.308 3.692 23 O -0.494 6.494 24 C -0.167 4.167 25 H 0.059 0.941 26 H 0.118 0.882 27 H 0.095 0.905 28 H 0.132 0.868 29 H 0.129 0.871 30 H 0.007 0.993 31 H 0.010 0.990 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.114 0.886 35 H 0.109 0.891 36 H 0.117 0.883 37 H 0.240 0.760 38 H 0.126 0.874 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.286 -5.674 20.957 21.713 hybrid contribution 0.307 0.138 -0.842 0.907 sum 0.021 -5.535 20.114 20.862 Atomic orbital electron populations 1.22252 0.93489 1.03739 1.03326 1.22925 0.95275 0.96911 0.82246 0.90320 1.86567 1.77020 1.42408 1.20546 1.24316 0.73033 0.85652 0.85738 1.90620 1.49415 1.18564 1.84575 1.21495 1.03688 1.00263 0.87991 1.18783 0.95416 0.93231 0.92380 1.21681 1.44472 0.95608 0.96371 0.90649 1.26057 0.95609 0.95272 1.03098 1.70156 1.49818 1.06903 1.30588 0.85302 0.77710 0.79221 0.78203 1.17836 1.20667 1.20558 1.21453 0.96892 0.94392 0.96446 0.86001 1.22014 0.94470 1.03426 0.97893 1.21576 0.99335 0.82863 0.97259 1.45518 1.28232 1.19814 1.42658 1.20453 0.80534 0.85777 0.82401 1.90740 1.67408 1.24343 1.66907 1.21683 1.01898 0.94809 0.98272 0.94106 0.88205 0.90484 0.86827 0.87109 0.99272 0.99021 0.92765 0.91549 0.88587 0.89076 0.88252 0.76013 0.87368 0.87939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.37 9.32 71.98 0.67 -2.69 16 2 C 0.08 1.76 2.26 30.60 0.07 1.83 16 3 H 0.08 1.92 7.16 -2.39 -0.02 1.90 16 4 O -0.35 -9.78 8.49 -51.46 -0.44 -10.22 16 5 C 0.47 17.20 7.93 71.24 0.56 17.76 16 6 O -0.54 -23.85 15.20 21.96 0.33 -23.51 16 7 C -0.10 -3.79 5.75 29.85 0.17 -3.62 16 8 C 0.04 2.08 4.26 29.85 0.13 2.21 16 9 C -0.54 -30.05 9.11 25.60 0.23 -29.81 16 10 H 0.08 3.83 7.74 -2.91 -0.02 3.81 16 11 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 12 N -0.93 -57.49 13.29 21.45 0.28 -57.21 16 13 Si 0.97 43.39 29.54 68.60 2.03 45.41 16 14 H -0.25 -10.58 7.11 99.48 0.71 -9.88 16 15 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 16 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 17 C -0.07 -1.09 2.10 -10.65 -0.02 -1.12 16 18 H 0.12 1.22 8.13 -2.39 -0.02 1.21 16 19 C -0.14 -1.87 5.13 30.69 0.16 -1.71 16 20 C 0.11 0.98 7.17 86.50 0.62 1.60 16 21 N -0.71 -10.09 5.45 -467.28 -2.55 -12.64 16 22 C 0.52 11.05 7.71 87.71 0.68 11.73 16 23 O -0.61 -18.66 17.78 -3.06 -0.05 -18.71 16 24 C -0.13 -2.31 4.77 29.71 0.14 -2.17 16 25 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.08 1.37 6.85 -2.38 -0.02 1.35 16 28 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 29 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 30 H -0.01 -0.67 8.10 -2.39 -0.02 -0.69 16 31 H -0.01 -0.51 8.10 -2.39 -0.02 -0.53 16 32 H 0.26 15.16 8.31 -92.70 -0.77 14.39 16 33 H 0.07 1.14 8.00 -2.38 -0.02 1.12 16 34 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.10 0.55 8.14 -2.38 -0.02 0.53 16 37 H 0.40 4.96 8.80 -92.71 -0.82 4.14 16 38 H 0.11 1.83 7.16 -2.39 -0.02 1.81 16 39 H 0.10 2.15 7.21 -2.39 -0.02 2.13 16 Total: -1.00 -76.39 324.58 3.71 -72.68 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: 0.23 Total: 9.87 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: 3.87 Total: -5.67 kcal Atomic # 7 Polarization: -67.59 SS G_CDS: -2.26 Total: -69.85 kcal Atomic # 8 Polarization: -52.29 SS G_CDS: -0.16 Total: -52.45 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -76.39 3.71 -72.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345990483.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.300 kcal (2) G-P(sol) polarization free energy of solvation -76.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds