Wall clock time and date at job start Mon Mar 30 2020 01:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09001 * 109.47349 * 2 1 4 4 O 1.45196 * 109.47221 * 120.00131 * 2 1 3 5 5 C 1.34231 * 117.00073 * 269.99849 * 4 2 1 6 6 O 1.20825 * 120.00097 * 359.97438 * 5 4 2 7 7 C 1.50697 * 120.00130 * 179.97438 * 5 4 2 8 8 C 1.53005 * 109.47299 * 180.02562 * 7 5 4 9 9 C 1.50697 * 109.47299 * 179.97438 * 8 7 5 10 10 H 1.08000 * 120.00044 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00121 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99822 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00057 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47118 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47210 * 120.00167 * 13 11 9 16 16 H 1.48502 * 109.46936 * 240.00055 * 13 11 9 17 17 C 1.53008 * 109.47110 * 240.00181 * 2 1 3 18 18 H 1.08998 * 109.67094 * 59.50265 * 17 2 1 19 19 C 1.53344 * 109.67053 * 180.02562 * 17 2 1 20 20 C 1.52926 * 108.67069 * 187.26466 * 19 17 2 21 21 N 1.45758 * 110.48462 * 309.24619 * 20 19 17 22 22 C 1.33350 * 124.10845 * 19.05167 * 21 20 19 23 23 O 1.21283 * 118.24281 * 177.79725 * 22 21 20 24 24 C 1.50174 * 123.50638 * 358.08201 * 22 21 20 25 25 H 1.08999 * 109.47297 * 59.99847 * 1 2 3 26 26 H 1.09001 * 109.47349 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47170 * 300.00049 * 1 2 3 28 28 H 1.08999 * 109.47246 * 300.00586 * 7 5 4 29 29 H 1.09008 * 109.46908 * 60.00498 * 7 5 4 30 30 H 1.09004 * 109.47067 * 300.00253 * 8 7 5 31 31 H 1.09000 * 109.46623 * 60.00109 * 8 7 5 32 32 H 0.97000 * 120.00176 * 179.97438 * 12 11 9 33 33 H 1.08999 * 109.60504 * 67.50744 * 19 17 2 34 34 H 1.08995 * 109.73968 * 307.09520 * 19 17 2 35 35 H 1.09003 * 109.29800 * 188.93555 * 20 19 17 36 36 H 1.08992 * 109.13380 * 69.45135 * 20 19 17 37 37 H 0.97001 * 117.94453 * 199.07958 * 21 20 19 38 38 H 1.09003 * 109.39983 * 137.43181 * 24 22 21 39 39 H 1.08998 * 109.40390 * 257.16827 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0139 -0.6845 1.1855 5 6 2.2171 0.0640 2.2811 6 8 1.9982 1.2518 2.2504 7 6 2.7182 -0.5772 3.5494 8 6 2.8624 0.4888 4.6374 9 6 3.3629 -0.1525 5.9060 10 1 3.5590 -1.2142 5.9333 11 6 3.5705 0.6161 7.0316 12 7 3.3312 1.9089 6.9985 13 14 4.1916 -0.1788 8.6038 14 1 4.3809 -1.6347 8.3811 15 1 5.4867 0.4358 8.9911 16 1 3.2001 0.0305 9.6894 17 6 2.0399 -0.7213 -1.2493 18 1 1.6711 -0.2151 -2.1414 19 6 3.5734 -0.7245 -1.2536 20 6 4.0580 -1.2852 -2.5913 21 7 3.3994 -2.5526 -2.8818 22 6 2.2678 -2.9571 -2.3037 23 8 1.7901 -4.0150 -2.6552 24 6 1.5502 -2.1697 -1.2453 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 2.0088 -1.3370 3.8773 29 1 3.6872 -1.0409 3.3639 30 1 3.5717 1.2489 4.3097 31 1 1.8933 0.9520 4.8228 32 1 3.4768 2.4496 7.7905 33 1 3.9401 -1.3506 -0.4402 34 1 3.9440 0.2928 -1.1278 35 1 5.1359 -1.4410 -2.5473 36 1 3.8292 -0.5708 -3.3820 37 1 3.8103 -3.1389 -3.5363 38 1 0.4782 -2.1921 -1.4419 39 1 1.7472 -2.6121 -0.2688 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345990484.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:06 Heat of formation + Delta-G solvation = -151.926541 kcal Electronic energy + Delta-G solvation = -20737.364111 eV Core-core repulsion = 17450.927829 eV Total energy + Delta-G solvation = -3286.436282 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.76926 -39.88569 -37.36526 -36.02499 -34.03432 -33.60388 -31.22204 -30.51013 -29.62000 -26.22408 -25.44342 -23.29834 -22.51099 -20.80689 -20.00053 -19.21552 -17.67843 -17.36948 -16.43322 -16.18246 -15.93386 -15.71831 -15.22583 -14.60978 -14.50984 -14.23861 -13.90423 -13.71623 -13.29966 -13.03027 -12.66674 -12.31936 -12.19002 -12.07586 -11.69877 -11.37140 -11.26853 -11.12174 -11.00240 -10.89521 -10.64297 -10.36068 -10.08650 -9.93298 -9.89044 -9.57430 -9.35431 -9.18881 -8.40641 -6.04315 -4.09159 2.46778 2.79026 3.04134 3.06066 3.29030 3.36760 3.40379 4.18444 4.28936 4.41038 4.43640 4.49826 4.93139 4.98726 5.04665 5.14574 5.19228 5.26471 5.29887 5.31406 5.52918 5.58425 5.69665 5.75313 5.79637 5.99818 6.07467 6.09825 6.18195 6.51029 6.63304 6.91709 7.07902 7.63691 7.69979 7.95054 8.00267 8.22867 8.38667 8.98252 9.55272 11.06690 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.029363 B = 0.003568 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.348828 B = 7844.643507 C = 8140.082966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.087 3.913 3 H 0.088 0.912 4 O -0.359 6.359 5 C 0.457 3.543 6 O -0.505 6.505 7 C -0.104 4.104 8 C 0.033 3.967 9 C -0.528 4.528 10 H 0.059 0.941 11 C 0.059 3.941 12 N -0.889 5.889 13 Si 0.895 3.105 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.283 1.283 17 C -0.084 4.084 18 H 0.093 0.907 19 C -0.137 4.137 20 C 0.111 3.889 21 N -0.722 5.722 22 C 0.523 3.477 23 O -0.562 6.562 24 C -0.131 4.131 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.025 0.975 31 H 0.025 0.975 32 H 0.261 0.739 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.398 0.602 38 H 0.102 0.898 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.508 -4.856 -19.768 20.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.032 3.968 3 H 0.106 0.894 4 O -0.278 6.278 5 C 0.301 3.699 6 O -0.391 6.391 7 C -0.142 4.142 8 C -0.004 4.004 9 C -0.566 4.566 10 H 0.077 0.923 11 C -0.143 4.143 12 N -0.528 5.528 13 Si 0.722 3.278 14 H -0.196 1.196 15 H -0.210 1.210 16 H -0.210 1.210 17 C -0.103 4.103 18 H 0.111 0.889 19 C -0.174 4.174 20 C -0.013 4.013 21 N -0.374 5.374 22 C 0.310 3.690 23 O -0.441 6.441 24 C -0.171 4.171 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.110 0.890 29 H 0.109 0.891 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.071 0.929 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.233 0.767 38 H 0.121 0.879 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.940 -4.707 -19.704 20.280 hybrid contribution 0.535 -0.263 0.612 0.855 sum -0.405 -4.971 -19.091 19.732 Atomic orbital electron populations 1.22234 0.94406 1.03119 1.03204 1.22558 0.94429 0.97117 0.82681 0.89403 1.86602 1.77545 1.43095 1.20554 1.24749 0.73756 0.86363 0.85081 1.90626 1.47676 1.17007 1.83812 1.21765 1.01692 1.01973 0.88748 1.19015 0.98526 0.92455 0.90407 1.21195 1.44999 0.94745 0.95707 0.92272 1.25018 0.95469 0.94812 0.99008 1.70001 1.48386 1.05039 1.29358 0.86496 0.78499 0.79522 0.83239 1.19635 1.20958 1.20954 1.21402 0.95919 0.95708 0.97247 0.88862 1.21962 0.95071 1.03135 0.97273 1.21400 0.97378 0.85008 0.97508 1.45508 1.25738 1.21803 1.44389 1.20260 0.80360 0.86042 0.82315 1.90758 1.65428 1.24403 1.63487 1.21722 1.01259 0.94585 0.99499 0.91040 0.91362 0.91491 0.89001 0.89061 0.95632 0.95621 0.92898 0.89764 0.89458 0.90267 0.91585 0.76749 0.87936 0.86797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.82 9.24 37.15 0.34 -1.48 16 2 C 0.09 1.01 2.30 -26.73 -0.06 0.95 16 3 H 0.09 1.11 7.16 -51.93 -0.37 0.74 16 4 O -0.36 -5.19 8.50 -39.26 -0.33 -5.53 16 5 C 0.46 8.36 7.93 36.00 0.29 8.64 16 6 O -0.50 -10.78 15.20 -18.75 -0.28 -11.06 16 7 C -0.10 -2.04 5.75 -27.88 -0.16 -2.20 16 8 C 0.03 0.85 4.26 -27.88 -0.12 0.73 16 9 C -0.53 -14.54 9.11 -34.44 -0.31 -14.85 16 10 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 11 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 12 N -0.89 -26.66 13.29 55.43 0.74 -25.93 16 13 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 14 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 C -0.08 -0.73 2.14 -90.49 -0.19 -0.92 16 18 H 0.09 0.65 8.13 -51.93 -0.42 0.23 16 19 C -0.14 -1.09 5.07 -26.59 -0.13 -1.22 16 20 C 0.11 0.68 7.17 -4.48 -0.03 0.65 16 21 N -0.72 -5.98 5.45 -61.39 -0.33 -6.32 16 22 C 0.52 5.91 7.72 -11.87 -0.09 5.82 16 23 O -0.56 -8.67 17.78 5.55 0.10 -8.57 16 24 C -0.13 -1.29 4.65 -28.19 -0.13 -1.42 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.66 6.74 -51.93 -0.35 0.31 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 29 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 30 H 0.03 0.71 8.10 -51.93 -0.42 0.29 16 31 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.08 0.80 7.92 -51.93 -0.41 0.39 16 34 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.40 2.87 8.80 -40.82 -0.36 2.51 16 38 H 0.10 0.94 7.11 -51.93 -0.37 0.57 16 39 H 0.11 1.24 7.33 -51.93 -0.38 0.86 16 LS Contribution 324.30 15.07 4.89 4.89 Total: -1.00 -34.01 324.30 -6.96 -40.98 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -6.01 Total: -0.90 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -0.71 Total: -3.74 kcal Atomic # 7 Polarization: -32.64 SS G_CDS: 0.40 Total: -32.24 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -0.52 Total: -25.16 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.01 -6.96 -40.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345990484.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.950 kcal (2) G-P(sol) polarization free energy of solvation -34.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds