Wall clock time and date at job start Mon Mar 30 2020 01:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09001 * 109.47349 * 2 1 4 4 O 1.45196 * 109.47221 * 120.00131 * 2 1 3 5 5 C 1.34231 * 117.00073 * 269.99849 * 4 2 1 6 6 O 1.20825 * 120.00097 * 359.97438 * 5 4 2 7 7 C 1.50697 * 120.00130 * 179.97438 * 5 4 2 8 8 C 1.53005 * 109.47299 * 180.02562 * 7 5 4 9 9 C 1.50697 * 109.47299 * 179.97438 * 8 7 5 10 10 H 1.08000 * 120.00044 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00121 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99822 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00057 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47118 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47210 * 120.00167 * 13 11 9 16 16 H 1.48502 * 109.46936 * 240.00055 * 13 11 9 17 17 C 1.53008 * 109.47110 * 240.00181 * 2 1 3 18 18 H 1.08998 * 109.67094 * 59.50265 * 17 2 1 19 19 C 1.53344 * 109.67053 * 180.02562 * 17 2 1 20 20 C 1.52926 * 108.67069 * 187.26466 * 19 17 2 21 21 N 1.45758 * 110.48462 * 309.24619 * 20 19 17 22 22 C 1.33350 * 124.10845 * 19.05167 * 21 20 19 23 23 O 1.21283 * 118.24281 * 177.79725 * 22 21 20 24 24 C 1.50174 * 123.50638 * 358.08201 * 22 21 20 25 25 H 1.08999 * 109.47297 * 59.99847 * 1 2 3 26 26 H 1.09001 * 109.47349 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47170 * 300.00049 * 1 2 3 28 28 H 1.08999 * 109.47246 * 300.00586 * 7 5 4 29 29 H 1.09008 * 109.46908 * 60.00498 * 7 5 4 30 30 H 1.09004 * 109.47067 * 300.00253 * 8 7 5 31 31 H 1.09000 * 109.46623 * 60.00109 * 8 7 5 32 32 H 0.97000 * 120.00176 * 179.97438 * 12 11 9 33 33 H 1.08999 * 109.60504 * 67.50744 * 19 17 2 34 34 H 1.08995 * 109.73968 * 307.09520 * 19 17 2 35 35 H 1.09003 * 109.29800 * 188.93555 * 20 19 17 36 36 H 1.08992 * 109.13380 * 69.45135 * 20 19 17 37 37 H 0.97001 * 117.94453 * 199.07958 * 21 20 19 38 38 H 1.09003 * 109.39983 * 137.43181 * 24 22 21 39 39 H 1.08998 * 109.40390 * 257.16827 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0139 -0.6845 1.1855 5 6 2.2171 0.0640 2.2811 6 8 1.9982 1.2518 2.2504 7 6 2.7182 -0.5772 3.5494 8 6 2.8624 0.4888 4.6374 9 6 3.3629 -0.1525 5.9060 10 1 3.5590 -1.2142 5.9333 11 6 3.5705 0.6161 7.0316 12 7 3.3312 1.9089 6.9985 13 14 4.1916 -0.1788 8.6038 14 1 4.3809 -1.6347 8.3811 15 1 5.4867 0.4358 8.9911 16 1 3.2001 0.0305 9.6894 17 6 2.0399 -0.7213 -1.2493 18 1 1.6711 -0.2151 -2.1414 19 6 3.5734 -0.7245 -1.2536 20 6 4.0580 -1.2852 -2.5913 21 7 3.3994 -2.5526 -2.8818 22 6 2.2678 -2.9571 -2.3037 23 8 1.7901 -4.0150 -2.6552 24 6 1.5502 -2.1697 -1.2453 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 2.0088 -1.3370 3.8773 29 1 3.6872 -1.0409 3.3639 30 1 3.5717 1.2489 4.3097 31 1 1.8933 0.9520 4.8228 32 1 3.4768 2.4496 7.7905 33 1 3.9401 -1.3506 -0.4402 34 1 3.9440 0.2928 -1.1278 35 1 5.1359 -1.4410 -2.5473 36 1 3.8292 -0.5708 -3.3820 37 1 3.8103 -3.1389 -3.5363 38 1 0.4782 -2.1921 -1.4419 39 1 1.7472 -2.6121 -0.2688 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345990484.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:05 Heat of formation + Delta-G solvation = -174.825924 kcal Electronic energy + Delta-G solvation = -20738.357103 eV Core-core repulsion = 17450.927829 eV Total energy + Delta-G solvation = -3287.429274 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.80932 -41.03401 -38.47800 -37.08531 -35.62878 -34.95287 -33.09777 -31.36864 -30.43216 -28.07487 -26.30929 -24.54671 -23.73271 -22.02784 -21.30164 -20.07772 -19.06441 -18.43091 -18.00329 -17.32267 -17.08385 -16.88666 -16.46671 -16.29557 -15.40695 -15.16696 -14.99814 -14.79747 -14.37125 -14.22446 -14.06056 -13.89785 -13.30347 -13.16407 -12.86999 -12.85328 -12.59814 -12.47306 -12.20022 -11.99375 -11.90452 -11.80468 -11.72590 -11.43508 -11.32402 -11.19007 -10.78515 -10.57914 -10.05339 -8.19715 -6.33039 1.31243 1.43896 1.44391 1.57735 1.60419 1.79023 2.37134 2.43620 3.14380 3.39705 3.53943 3.71230 3.82499 3.94645 4.13675 4.29608 4.30815 4.43927 4.45009 4.47693 4.49351 4.70880 4.76065 4.84399 4.90211 4.94118 4.97878 5.03752 5.22380 5.31927 5.46080 5.52692 5.57302 5.81900 5.85000 6.14666 6.33322 6.83200 6.92338 7.21002 7.37341 8.92993 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.029363 B = 0.003568 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.348828 B = 7844.643507 C = 8140.082966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.081 3.919 3 H 0.078 0.922 4 O -0.348 6.348 5 C 0.468 3.532 6 O -0.542 6.542 7 C -0.097 4.097 8 C 0.039 3.961 9 C -0.543 4.543 10 H 0.076 0.924 11 C -0.003 4.003 12 N -0.935 5.935 13 Si 0.972 3.028 14 H -0.255 1.255 15 H -0.280 1.280 16 H -0.281 1.281 17 C -0.073 4.073 18 H 0.121 0.879 19 C -0.140 4.140 20 C 0.113 3.887 21 N -0.712 5.712 22 C 0.520 3.480 23 O -0.611 6.611 24 C -0.128 4.128 25 H 0.099 0.901 26 H 0.077 0.923 27 H 0.040 0.960 28 H 0.111 0.889 29 H 0.114 0.886 30 H -0.009 1.009 31 H -0.011 1.011 32 H 0.264 0.736 33 H 0.067 0.933 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.404 0.596 38 H 0.109 0.891 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.268 -6.030 -20.811 21.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.027 3.973 3 H 0.097 0.903 4 O -0.265 6.265 5 C 0.313 3.687 6 O -0.432 6.432 7 C -0.134 4.134 8 C 0.002 3.998 9 C -0.581 4.581 10 H 0.094 0.906 11 C -0.200 4.200 12 N -0.575 5.575 13 Si 0.796 3.204 14 H -0.178 1.178 15 H -0.205 1.205 16 H -0.207 1.207 17 C -0.092 4.092 18 H 0.139 0.861 19 C -0.178 4.178 20 C -0.010 4.010 21 N -0.362 5.362 22 C 0.309 3.691 23 O -0.494 6.494 24 C -0.167 4.167 25 H 0.118 0.882 26 H 0.096 0.904 27 H 0.059 0.941 28 H 0.129 0.871 29 H 0.132 0.868 30 H 0.010 0.990 31 H 0.007 0.993 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.113 0.887 35 H 0.118 0.882 36 H 0.109 0.891 37 H 0.240 0.760 38 H 0.127 0.873 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.133 -5.891 -20.780 21.599 hybrid contribution 0.293 0.142 0.841 0.902 sum 0.160 -5.749 -19.939 20.752 Atomic orbital electron populations 1.22258 0.93515 1.03764 1.03325 1.22916 0.95267 0.96905 0.82248 0.90344 1.86563 1.77003 1.42424 1.20529 1.24315 0.73029 0.85652 0.85737 1.90620 1.49435 1.18568 1.84574 1.21494 1.03698 1.00256 0.87976 1.18784 0.95411 0.93236 0.92385 1.21680 1.44457 0.95612 0.96366 0.90635 1.26060 0.95614 0.95273 1.03103 1.70157 1.49828 1.06904 1.30591 0.85301 0.77707 0.79226 0.78197 1.17822 1.20549 1.20690 1.21408 0.96552 0.94763 0.96439 0.86087 1.21990 0.94401 1.03439 0.97934 1.21580 0.98227 0.84206 0.97019 1.45522 1.24666 1.22515 1.43511 1.20441 0.80880 0.85454 0.82370 1.90738 1.66988 1.26466 1.65192 1.21674 1.01689 0.94892 0.98453 0.88227 0.90436 0.94099 0.87115 0.86794 0.99021 0.99288 0.92768 0.91454 0.88704 0.88219 0.89128 0.76011 0.87254 0.87985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.39 9.24 71.98 0.66 -2.72 16 2 C 0.08 1.76 2.30 30.59 0.07 1.83 16 3 H 0.08 1.92 7.16 -2.39 -0.02 1.90 16 4 O -0.35 -9.75 8.50 -51.43 -0.44 -10.19 16 5 C 0.47 17.17 7.93 71.23 0.56 17.73 16 6 O -0.54 -23.85 15.20 21.97 0.33 -23.51 16 7 C -0.10 -3.77 5.75 29.85 0.17 -3.60 16 8 C 0.04 2.08 4.26 29.85 0.13 2.20 16 9 C -0.54 -30.00 9.11 25.60 0.23 -29.77 16 10 H 0.08 3.83 7.74 -2.91 -0.02 3.81 16 11 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 12 N -0.93 -57.48 13.29 21.45 0.28 -57.19 16 13 Si 0.97 43.34 29.54 68.60 2.03 45.37 16 14 H -0.25 -10.56 7.11 99.48 0.71 -9.85 16 15 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 16 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 17 C -0.07 -1.09 2.14 -10.71 -0.02 -1.11 16 18 H 0.12 1.23 8.13 -2.39 -0.02 1.21 16 19 C -0.14 -1.88 5.07 30.68 0.16 -1.72 16 20 C 0.11 0.99 7.17 86.49 0.62 1.61 16 21 N -0.71 -10.07 5.45 -467.31 -2.55 -12.61 16 22 C 0.52 10.99 7.72 87.71 0.68 11.67 16 23 O -0.61 -18.55 17.78 -3.04 -0.05 -18.61 16 24 C -0.13 -2.29 4.65 29.65 0.14 -2.15 16 25 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.08 1.38 6.74 -2.39 -0.02 1.36 16 27 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 29 H 0.11 3.92 8.14 -2.38 -0.02 3.90 16 30 H -0.01 -0.51 8.10 -2.38 -0.02 -0.53 16 31 H -0.01 -0.68 8.10 -2.39 -0.02 -0.70 16 32 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 33 H 0.07 1.15 7.92 -2.39 -0.02 1.14 16 34 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.40 4.95 8.80 -92.71 -0.82 4.13 16 38 H 0.11 1.81 7.11 -2.39 -0.02 1.79 16 39 H 0.10 2.10 7.33 -2.39 -0.02 2.09 16 Total: -1.00 -76.29 324.30 3.70 -72.59 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: 0.23 Total: 9.88 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: 3.86 Total: -5.72 kcal Atomic # 7 Polarization: -67.55 SS G_CDS: -2.26 Total: -69.81 kcal Atomic # 8 Polarization: -52.15 SS G_CDS: -0.16 Total: -52.31 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -76.29 3.70 -72.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345990484.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.236 kcal (2) G-P(sol) polarization free energy of solvation -76.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds