Wall clock time and date at job start Mon Mar 30 2020 01:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.47223 * 2 1 4 4 C 1.50696 * 109.47056 * 239.99676 * 2 1 3 5 5 H 1.08002 * 120.00233 * 239.99999 * 4 2 1 6 6 C 1.37879 * 120.00231 * 59.99933 * 4 2 1 7 7 N 1.31516 * 119.99452 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00312 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47003 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47155 * 119.99715 * 8 6 4 11 11 H 1.48497 * 109.47220 * 240.00370 * 8 6 4 12 12 C 1.50705 * 109.47189 * 119.99650 * 2 1 3 13 13 O 1.20823 * 120.00119 * 120.00167 * 12 2 1 14 14 O 1.34223 * 119.99868 * 300.00058 * 12 2 1 15 15 C 1.45200 * 116.99845 * 180.02562 * 14 12 2 16 16 H 1.08998 * 109.46961 * 329.99207 * 15 14 12 17 17 C 1.52999 * 109.47540 * 89.99941 * 15 14 12 18 18 C 1.53007 * 109.46868 * 209.99788 * 15 14 12 19 19 H 1.08991 * 109.70426 * 300.51164 * 18 15 14 20 20 C 1.53347 * 109.67391 * 61.03205 * 18 15 14 21 21 C 1.52906 * 108.68630 * 187.25106 * 20 18 15 22 22 N 1.45754 * 110.49312 * 309.27304 * 21 20 18 23 23 C 1.33354 * 124.10828 * 19.04378 * 22 21 20 24 24 O 1.21276 * 118.24630 * 177.77723 * 23 22 21 25 25 C 1.50171 * 123.50876 * 357.79016 * 23 22 21 26 26 H 1.09000 * 109.47279 * 59.99957 * 1 2 3 27 27 H 1.08997 * 109.46998 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47184 * 300.00128 * 1 2 3 29 29 H 0.97000 * 119.99488 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.47209 * 180.02562 * 17 15 14 31 31 H 1.08995 * 109.46788 * 299.99866 * 17 15 14 32 32 H 1.08993 * 109.47159 * 59.99815 * 17 15 14 33 33 H 1.08998 * 109.60199 * 307.02194 * 20 18 15 34 34 H 1.08998 * 109.60261 * 67.50295 * 20 18 15 35 35 H 1.08996 * 109.30882 * 188.95484 * 21 20 18 36 36 H 1.09000 * 109.11802 * 69.47022 * 21 20 18 37 37 H 0.96998 * 117.94881 * 199.05626 * 22 21 20 38 38 H 1.09004 * 109.40592 * 257.46214 * 25 23 22 39 39 H 1.09005 * 109.40097 * 137.71327 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9426 0.8295 -2.6034 8 14 2.3212 -1.1206 -4.0079 9 1 3.1464 -2.2873 -3.6036 10 1 1.1659 -1.5870 -4.8159 11 1 3.1465 -0.1877 -4.8165 12 6 2.0323 -0.7104 1.2305 13 8 2.7270 -1.6927 1.1198 14 8 1.7081 -0.2517 2.4496 15 6 2.2277 -0.9855 3.5897 16 1 2.3418 -2.0364 3.3240 17 6 3.5877 -0.4100 3.9899 18 6 1.2549 -0.8591 4.7639 19 1 1.1310 0.1913 5.0269 20 6 -0.1025 -1.4580 4.3766 21 6 -1.1057 -1.1595 5.4913 22 7 -0.5620 -1.5514 6.7855 23 6 0.7356 -1.7462 7.0235 24 8 1.0757 -2.0312 8.1522 25 6 1.7983 -1.6313 5.9687 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.7086 1.1610 -3.4844 30 1 3.9779 -0.9612 4.8454 31 1 4.2806 -0.5001 3.1534 32 1 3.4735 0.6409 4.2556 33 1 -0.4473 -1.0101 3.4446 34 1 -0.0044 -2.5364 4.2524 35 1 -2.0265 -1.7123 5.3050 36 1 -1.3223 -0.0913 5.5000 37 1 -1.1829 -1.6787 7.5198 38 1 2.1035 -2.6286 5.6518 39 1 2.6596 -1.1036 6.3785 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347960304.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:14 Heat of formation + Delta-G solvation = -147.350512 kcal Electronic energy + Delta-G solvation = -21187.294607 eV Core-core repulsion = 17901.056756 eV Total energy + Delta-G solvation = -3286.237850 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.61129 -39.62816 -37.16592 -35.77870 -34.01216 -33.87226 -30.79977 -30.26947 -29.36873 -25.51728 -25.24738 -23.46076 -22.87965 -20.86170 -19.91337 -19.22495 -17.53485 -16.85674 -16.25556 -16.07857 -15.89042 -15.48810 -15.07249 -14.61496 -14.24054 -14.13831 -13.77086 -13.40987 -13.05178 -12.92163 -12.49562 -12.07416 -11.98858 -11.81412 -11.43427 -11.19389 -11.12338 -11.03997 -10.83805 -10.72800 -10.65893 -10.38651 -10.21298 -10.07246 -9.80262 -9.29433 -9.12371 -9.07283 -8.48904 -6.14412 -4.19693 2.46793 3.10194 3.25335 3.28023 3.32595 3.35451 3.45896 4.32746 4.38317 4.43263 4.56816 4.67915 5.08485 5.09839 5.12672 5.19253 5.25033 5.36921 5.39815 5.58908 5.62536 5.66503 5.87207 5.95322 6.06193 6.20035 6.31575 6.55006 6.60992 6.80797 6.83244 7.11645 7.20817 7.39321 7.70172 7.90886 8.01873 8.10564 8.82171 8.90801 9.46302 10.92981 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.037306 B = 0.004104 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.372545 B = 6821.361391 C = 7204.943286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.056 3.944 3 H 0.063 0.937 4 C -0.512 4.512 5 H 0.076 0.924 6 C 0.062 3.938 7 N -0.892 5.892 8 Si 0.903 3.097 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.465 3.535 13 O -0.516 6.516 14 O -0.359 6.359 15 C 0.086 3.914 16 H 0.082 0.918 17 C -0.171 4.171 18 C -0.085 4.085 19 H 0.090 0.910 20 C -0.136 4.136 21 C 0.110 3.890 22 N -0.720 5.720 23 C 0.525 3.475 24 O -0.563 6.563 25 C -0.130 4.130 26 H 0.095 0.905 27 H 0.030 0.970 28 H 0.023 0.977 29 H 0.263 0.737 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.099 0.901 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.398 0.602 38 H 0.103 0.897 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.774 -1.270 14.109 14.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.038 3.962 3 H 0.081 0.919 4 C -0.550 4.550 5 H 0.094 0.906 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.730 3.270 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.310 3.690 13 O -0.403 6.403 14 O -0.277 6.277 15 C 0.030 3.970 16 H 0.100 0.900 17 C -0.228 4.228 18 C -0.104 4.104 19 H 0.108 0.892 20 C -0.174 4.174 21 C -0.014 4.014 22 N -0.372 5.372 23 C 0.312 3.688 24 O -0.442 6.442 25 C -0.170 4.170 26 H 0.114 0.886 27 H 0.050 0.950 28 H 0.042 0.958 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.117 0.883 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.233 0.767 38 H 0.121 0.879 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.294 -1.581 14.341 14.799 hybrid contribution 0.083 -0.521 -0.660 0.845 sum -3.211 -2.103 13.680 14.209 Atomic orbital electron populations 1.21723 0.95652 0.99943 1.01706 1.18760 0.94836 0.96964 0.85682 0.91903 1.21176 1.31816 1.13210 0.88790 0.90616 1.24933 0.94901 0.95010 0.99139 1.69886 1.36564 1.22851 1.23760 0.86346 0.78674 0.79746 0.82205 1.19516 1.20883 1.20892 1.25330 0.76528 0.83077 0.84113 1.90491 1.36394 1.26835 1.86590 1.86664 1.70181 1.55677 1.15206 1.22452 0.92738 0.97458 0.84313 0.89993 1.22229 0.96464 1.01854 1.02273 1.21323 0.94769 1.01139 0.93162 0.89186 1.21964 0.94226 1.02100 0.99112 1.21437 0.97049 1.00657 0.82222 1.45525 1.07818 1.70093 1.13759 1.20108 0.83627 0.75567 0.89511 1.90754 1.81044 1.49139 1.23306 1.21740 0.97675 1.03578 0.93976 0.88621 0.95039 0.95807 0.92751 0.91174 0.91613 0.91646 0.88268 0.90917 0.90263 0.91187 0.76733 0.87854 0.87616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.90 37.16 0.33 -2.62 16 2 C 0.06 1.37 2.74 -92.92 -0.25 1.12 16 3 H 0.06 1.59 8.14 -51.93 -0.42 1.17 16 4 C -0.51 -13.96 8.37 -34.44 -0.29 -14.25 16 5 H 0.08 2.17 6.76 -52.49 -0.35 1.81 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 7 N -0.89 -24.22 11.32 55.43 0.63 -23.59 16 8 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 9 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 C 0.46 10.24 7.22 36.01 0.26 10.50 16 13 O -0.52 -12.49 14.68 -18.75 -0.28 -12.76 16 14 O -0.36 -6.41 9.06 -39.24 -0.36 -6.77 16 15 C 0.09 1.21 2.12 -26.73 -0.06 1.16 16 16 H 0.08 1.26 7.16 -51.93 -0.37 0.89 16 17 C -0.17 -2.18 9.21 37.16 0.34 -1.83 16 18 C -0.09 -0.92 2.06 -90.40 -0.19 -1.11 16 19 H 0.09 0.95 8.13 -51.93 -0.42 0.53 16 20 C -0.14 -1.37 5.26 -26.60 -0.14 -1.51 16 21 C 0.11 0.86 7.17 -4.49 -0.03 0.83 16 22 N -0.72 -6.59 5.45 -61.40 -0.33 -6.92 16 23 C 0.52 6.18 7.71 -11.87 -0.09 6.09 16 24 O -0.56 -8.78 17.78 5.56 0.10 -8.69 16 25 C -0.13 -1.33 4.65 -28.10 -0.13 -1.46 16 26 H 0.10 2.34 6.07 -51.93 -0.32 2.02 16 27 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.02 0.45 8.11 -51.93 -0.42 0.03 16 29 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 30 H 0.07 0.71 6.71 -51.93 -0.35 0.37 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.10 1.13 7.54 -51.93 -0.39 0.73 16 34 H 0.07 0.74 8.12 -51.93 -0.42 0.32 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.40 3.14 8.80 -40.82 -0.36 2.78 16 38 H 0.10 1.00 8.10 -51.93 -0.42 0.58 16 39 H 0.11 1.01 7.09 -51.93 -0.37 0.64 16 LS Contribution 319.64 15.07 4.82 4.82 Total: -1.00 -31.34 319.64 -6.65 -37.99 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -5.87 Total: 1.45 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -0.34 Total: -1.53 kcal Atomic # 7 Polarization: -30.81 SS G_CDS: 0.29 Total: -30.52 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -0.53 Total: -28.22 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.34 -6.65 -37.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347960304.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.364 kcal (2) G-P(sol) polarization free energy of solvation -31.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds