Wall clock time and date at job start Mon Mar 30 2020 01:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.47223 * 2 1 4 4 C 1.50696 * 109.47056 * 239.99676 * 2 1 3 5 5 H 1.08002 * 120.00233 * 239.99999 * 4 2 1 6 6 C 1.37879 * 120.00231 * 59.99933 * 4 2 1 7 7 N 1.31516 * 119.99452 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00312 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47003 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47155 * 119.99715 * 8 6 4 11 11 H 1.48497 * 109.47220 * 240.00370 * 8 6 4 12 12 C 1.50705 * 109.47189 * 119.99650 * 2 1 3 13 13 O 1.20823 * 120.00119 * 120.00167 * 12 2 1 14 14 O 1.34223 * 119.99868 * 300.00058 * 12 2 1 15 15 C 1.45200 * 116.99845 * 180.02562 * 14 12 2 16 16 H 1.08998 * 109.46961 * 329.99207 * 15 14 12 17 17 C 1.52999 * 109.47540 * 89.99941 * 15 14 12 18 18 C 1.53007 * 109.46868 * 209.99788 * 15 14 12 19 19 H 1.08991 * 109.70426 * 300.51164 * 18 15 14 20 20 C 1.53347 * 109.67391 * 61.03205 * 18 15 14 21 21 C 1.52906 * 108.68630 * 187.25106 * 20 18 15 22 22 N 1.45754 * 110.49312 * 309.27304 * 21 20 18 23 23 C 1.33354 * 124.10828 * 19.04378 * 22 21 20 24 24 O 1.21276 * 118.24630 * 177.77723 * 23 22 21 25 25 C 1.50171 * 123.50876 * 357.79016 * 23 22 21 26 26 H 1.09000 * 109.47279 * 59.99957 * 1 2 3 27 27 H 1.08997 * 109.46998 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47184 * 300.00128 * 1 2 3 29 29 H 0.97000 * 119.99488 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.47209 * 180.02562 * 17 15 14 31 31 H 1.08995 * 109.46788 * 299.99866 * 17 15 14 32 32 H 1.08993 * 109.47159 * 59.99815 * 17 15 14 33 33 H 1.08998 * 109.60199 * 307.02194 * 20 18 15 34 34 H 1.08998 * 109.60261 * 67.50295 * 20 18 15 35 35 H 1.08996 * 109.30882 * 188.95484 * 21 20 18 36 36 H 1.09000 * 109.11802 * 69.47022 * 21 20 18 37 37 H 0.96998 * 117.94881 * 199.05626 * 22 21 20 38 38 H 1.09004 * 109.40592 * 257.46214 * 25 23 22 39 39 H 1.09005 * 109.40097 * 137.71327 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9426 0.8295 -2.6034 8 14 2.3212 -1.1206 -4.0079 9 1 3.1464 -2.2873 -3.6036 10 1 1.1659 -1.5870 -4.8159 11 1 3.1465 -0.1877 -4.8165 12 6 2.0323 -0.7104 1.2305 13 8 2.7270 -1.6927 1.1198 14 8 1.7081 -0.2517 2.4496 15 6 2.2277 -0.9855 3.5897 16 1 2.3418 -2.0364 3.3240 17 6 3.5877 -0.4100 3.9899 18 6 1.2549 -0.8591 4.7639 19 1 1.1310 0.1913 5.0269 20 6 -0.1025 -1.4580 4.3766 21 6 -1.1057 -1.1595 5.4913 22 7 -0.5620 -1.5514 6.7855 23 6 0.7356 -1.7462 7.0235 24 8 1.0757 -2.0312 8.1522 25 6 1.7983 -1.6313 5.9687 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.7086 1.1610 -3.4844 30 1 3.9779 -0.9612 4.8454 31 1 4.2806 -0.5001 3.1534 32 1 3.4735 0.6409 4.2556 33 1 -0.4473 -1.0101 3.4446 34 1 -0.0044 -2.5364 4.2524 35 1 -2.0265 -1.7123 5.3050 36 1 -1.3223 -0.0913 5.5000 37 1 -1.1829 -1.6787 7.5198 38 1 2.1035 -2.6286 5.6518 39 1 2.6596 -1.1036 6.3785 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347960304.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:13 Heat of formation + Delta-G solvation = -167.289982 kcal Electronic energy + Delta-G solvation = -21188.159247 eV Core-core repulsion = 17901.056756 eV Total energy + Delta-G solvation = -3287.102491 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.70815 -41.02905 -38.38476 -37.04260 -35.88630 -35.03194 -32.62373 -31.31370 -30.32262 -27.25555 -26.51499 -24.99443 -23.85694 -22.18811 -21.34050 -20.17324 -18.55997 -18.42652 -17.99843 -17.53396 -17.03852 -16.75797 -16.48415 -15.97619 -15.35287 -15.18928 -14.99400 -14.66788 -14.38009 -14.17176 -13.89134 -13.54900 -13.20785 -12.97648 -12.83991 -12.73559 -12.62738 -12.54202 -12.25288 -12.07668 -12.06115 -12.01526 -11.73698 -11.46009 -11.08061 -11.00602 -10.75528 -10.50460 -10.07433 -8.18713 -6.31124 1.41186 1.43703 1.52269 1.55440 1.57089 1.91949 2.34688 2.45121 3.11683 3.39967 3.58526 3.71508 3.80506 4.06068 4.17355 4.25141 4.30833 4.43211 4.45652 4.67519 4.73668 4.76791 4.84127 4.87598 4.91928 4.95598 5.02516 5.14432 5.17974 5.25315 5.45465 5.59678 5.73700 5.82225 5.93882 6.14968 6.30360 6.75855 7.13523 7.17667 7.37963 8.87594 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.037306 B = 0.004104 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.372545 B = 6821.361391 C = 7204.943286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.048 3.952 3 H 0.048 0.952 4 C -0.537 4.537 5 H 0.054 0.946 6 C 0.024 3.976 7 N -0.908 5.908 8 Si 0.959 3.041 9 H -0.277 1.277 10 H -0.273 1.273 11 H -0.275 1.275 12 C 0.475 3.525 13 O -0.544 6.544 14 O -0.351 6.351 15 C 0.080 3.920 16 H 0.069 0.931 17 C -0.169 4.169 18 C -0.074 4.074 19 H 0.100 0.900 20 C -0.139 4.139 21 C 0.114 3.886 22 N -0.710 5.710 23 C 0.523 3.477 24 O -0.607 6.607 25 C -0.124 4.124 26 H 0.074 0.926 27 H 0.029 0.971 28 H 0.053 0.947 29 H 0.267 0.733 30 H 0.098 0.902 31 H 0.039 0.961 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.406 0.594 38 H 0.108 0.892 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.603 -1.095 14.824 15.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.029 3.971 3 H 0.066 0.934 4 C -0.575 4.575 5 H 0.072 0.928 6 C -0.176 4.176 7 N -0.547 5.547 8 Si 0.785 3.215 9 H -0.202 1.202 10 H -0.198 1.198 11 H -0.200 1.200 12 C 0.320 3.680 13 O -0.433 6.433 14 O -0.268 6.268 15 C 0.025 3.975 16 H 0.087 0.913 17 C -0.227 4.227 18 C -0.093 4.093 19 H 0.118 0.882 20 C -0.177 4.177 21 C -0.009 4.009 22 N -0.360 5.360 23 C 0.311 3.689 24 O -0.489 6.489 25 C -0.164 4.164 26 H 0.093 0.907 27 H 0.049 0.951 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.117 0.883 31 H 0.058 0.942 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.121 0.879 36 H 0.103 0.897 37 H 0.242 0.758 38 H 0.127 0.873 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.167 -1.379 15.056 15.683 hybrid contribution 0.322 -0.552 -0.830 1.048 sum -3.845 -1.931 14.226 14.862 Atomic orbital electron populations 1.21538 0.94082 0.99929 1.02089 1.18675 0.96153 0.95986 0.86300 0.93388 1.21292 1.32390 1.13143 0.90634 0.92755 1.25587 0.94952 0.95643 1.01434 1.69962 1.36724 1.23392 1.24584 0.85483 0.78380 0.78552 0.79127 1.20228 1.19801 1.20044 1.24721 0.75927 0.82318 0.85004 1.90476 1.37580 1.27997 1.87295 1.86592 1.69801 1.55630 1.14794 1.22825 0.94549 0.96372 0.83753 0.91325 1.22251 0.94992 1.03076 1.02339 1.21256 0.94328 1.02001 0.91725 0.88188 1.21969 0.94352 1.01789 0.99593 1.21535 0.96910 1.01978 0.80464 1.45509 1.07242 1.68657 1.14597 1.20277 0.84493 0.75121 0.89008 1.90742 1.81824 1.51476 1.24898 1.21705 0.97656 1.03932 0.93100 0.90745 0.95144 0.92763 0.92337 0.88289 0.94168 0.90438 0.89355 0.91225 0.87879 0.89692 0.75824 0.87340 0.86616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.23 8.90 71.98 0.64 -4.59 16 2 C 0.05 2.36 2.74 -12.29 -0.03 2.32 16 3 H 0.05 2.48 8.14 -2.38 -0.02 2.47 16 4 C -0.54 -29.79 8.37 25.60 0.21 -29.58 16 5 H 0.05 3.20 6.76 -2.91 -0.02 3.18 16 6 C 0.02 1.28 5.30 84.65 0.45 1.73 16 7 N -0.91 -49.25 11.32 21.45 0.24 -49.01 16 8 Si 0.96 43.12 29.54 68.60 2.03 45.14 16 9 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 10 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 11 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 12 C 0.47 21.06 7.22 71.24 0.51 21.58 16 13 O -0.54 -26.81 14.68 21.97 0.32 -26.48 16 14 O -0.35 -12.25 9.06 -51.35 -0.47 -12.72 16 15 C 0.08 2.16 2.12 30.60 0.06 2.22 16 16 H 0.07 2.08 7.16 -2.39 -0.02 2.06 16 17 C -0.17 -4.08 9.21 71.98 0.66 -3.42 16 18 C -0.07 -1.45 2.06 -10.65 -0.02 -1.47 16 19 H 0.10 1.80 8.13 -2.39 -0.02 1.79 16 20 C -0.14 -2.50 5.26 30.68 0.16 -2.34 16 21 C 0.11 1.42 7.17 86.49 0.62 2.04 16 22 N -0.71 -11.17 5.45 -467.35 -2.55 -13.72 16 23 C 0.52 11.33 7.71 87.71 0.68 12.01 16 24 O -0.61 -18.25 17.78 -3.02 -0.05 -18.30 16 25 C -0.12 -2.28 4.65 29.71 0.14 -2.14 16 26 H 0.07 3.62 6.07 -2.39 -0.01 3.61 16 27 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.05 2.00 8.11 -2.39 -0.02 1.98 16 29 H 0.27 13.65 8.31 -92.71 -0.77 12.88 16 30 H 0.10 1.80 6.71 -2.39 -0.02 1.78 16 31 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.09 1.83 7.54 -2.39 -0.02 1.81 16 34 H 0.07 1.30 8.12 -2.39 -0.02 1.28 16 35 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.41 5.42 8.80 -92.71 -0.82 4.60 16 38 H 0.11 1.91 8.10 -2.39 -0.02 1.89 16 39 H 0.12 1.91 7.09 -2.38 -0.02 1.89 16 Total: -1.00 -67.80 319.64 3.85 -63.95 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: 0.24 Total: 12.78 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: 4.09 Total: -1.64 kcal Atomic # 7 Polarization: -60.42 SS G_CDS: -2.30 Total: -62.73 kcal Atomic # 8 Polarization: -57.30 SS G_CDS: -0.20 Total: -57.50 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Total: -67.80 3.85 -63.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347960304.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.343 kcal (2) G-P(sol) polarization free energy of solvation -67.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds