Wall clock time and date at job start Mon Mar 30 2020 01:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47030 * 2 1 4 4 C 1.50699 * 109.47366 * 239.99198 * 2 1 3 5 5 H 1.07999 * 120.00098 * 240.00240 * 4 2 1 6 6 C 1.37875 * 119.99638 * 60.00020 * 4 2 1 7 7 N 1.31516 * 120.00233 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99835 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46886 * 90.00192 * 8 6 4 10 10 H 1.48506 * 109.46953 * 210.00039 * 8 6 4 11 11 H 1.48502 * 109.47041 * 330.00158 * 8 6 4 12 12 C 1.50708 * 109.46698 * 119.99311 * 2 1 3 13 13 O 1.20828 * 119.99719 * 120.00397 * 12 2 1 14 14 O 1.34228 * 120.00029 * 299.99813 * 12 2 1 15 15 C 1.45197 * 116.99909 * 180.02562 * 14 12 2 16 16 C 1.52996 * 109.47272 * 180.02562 * 15 14 12 17 17 H 1.09000 * 109.59971 * 305.32174 * 16 15 14 18 18 C 1.53348 * 109.60497 * 185.00084 * 16 15 14 19 19 C 1.53071 * 108.42564 * 172.55061 * 18 16 15 20 20 C 1.50177 * 109.89078 * 48.89934 * 19 18 16 21 21 O 1.21278 * 118.24377 * 162.44254 * 20 19 18 22 22 N 1.33355 * 123.50950 * 342.41604 * 20 19 18 23 23 C 1.46499 * 117.94432 * 182.22433 * 22 20 19 24 24 C 1.45750 * 124.10424 * 2.50364 * 22 20 19 25 25 H 1.09004 * 109.47551 * 300.00291 * 1 2 3 26 26 H 1.08999 * 109.47020 * 60.00693 * 1 2 3 27 27 H 1.09005 * 109.47351 * 180.02562 * 1 2 3 28 28 H 0.97005 * 120.00022 * 180.02562 * 7 6 4 29 29 H 1.09007 * 109.47286 * 60.00061 * 15 14 12 30 30 H 1.09003 * 109.47147 * 300.00473 * 15 14 12 31 31 H 1.09003 * 109.67474 * 52.81618 * 18 16 15 32 32 H 1.09003 * 109.67167 * 292.28300 * 18 16 15 33 33 H 1.09000 * 109.39896 * 288.77193 * 19 18 16 34 34 H 1.08999 * 109.32737 * 168.98794 * 19 18 16 35 35 H 1.09002 * 109.47391 * 0.02562 * 23 22 20 36 36 H 1.09001 * 109.46813 * 240.00121 * 23 22 20 37 37 H 1.09004 * 109.47041 * 120.00248 * 23 22 20 38 38 H 1.08999 * 109.30205 * 100.96056 * 24 22 20 39 39 H 1.09005 * 109.30121 * 220.33153 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6532 -1.5886 -1.1311 6 6 1.6993 -0.2396 -2.4826 7 7 0.9436 0.8299 -2.6034 8 14 2.3226 -1.1200 -4.0078 9 1 1.3449 -2.1620 -4.4121 10 1 2.4874 -0.1407 -5.1120 11 1 3.6310 -1.7570 -3.7116 12 6 2.0322 -0.7103 1.2306 13 8 2.7269 -1.6927 1.1199 14 8 1.7079 -0.2516 2.4497 15 6 2.2275 -0.9853 3.5898 16 6 1.7553 -0.3187 4.8835 17 1 2.0361 0.7345 4.8757 18 6 2.4025 -1.0148 6.0869 19 6 2.0636 -0.2159 7.3478 20 6 0.5902 0.0715 7.3899 21 8 0.0998 0.4013 8.4490 22 7 -0.2077 -0.0160 6.3250 23 6 -1.6187 0.3402 6.4933 24 6 0.2348 -0.4494 5.0057 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 0.7089 1.1610 -3.4845 29 1 3.3170 -0.9842 3.5568 30 1 1.8640 -2.0124 3.5571 31 1 3.4838 -1.0487 5.9535 32 1 2.0117 -2.0283 6.1784 33 1 2.6157 0.7238 7.3403 34 1 2.3450 -0.7942 8.2278 35 1 -1.7977 0.6379 7.5265 36 1 -2.2422 -0.5200 6.2494 37 1 -1.8662 1.1682 5.8289 38 1 -0.0545 -1.4890 4.8521 39 1 -0.2406 0.1698 4.2448 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348258073.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:36 Heat of formation + Delta-G solvation = -136.963832 kcal Electronic energy + Delta-G solvation = -20824.202966 eV Core-core repulsion = 17538.415516 eV Total energy + Delta-G solvation = -3285.787450 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.70312 -39.60997 -37.16310 -35.61659 -34.40619 -33.93215 -31.06731 -30.40075 -27.59161 -25.93682 -25.25070 -24.28363 -22.83596 -21.42042 -19.85988 -18.89480 -16.93852 -16.71027 -16.53984 -16.13336 -16.04354 -15.73557 -15.31853 -14.58283 -14.43002 -14.24278 -13.47412 -13.29767 -13.00853 -12.88015 -12.62071 -12.32818 -12.24032 -11.84705 -11.58671 -11.33599 -11.30727 -11.10618 -11.01881 -10.81044 -10.73434 -10.40425 -10.11489 -10.09305 -9.82809 -9.18166 -9.09571 -8.89483 -8.49300 -6.14938 -4.20607 2.46558 2.84560 3.23820 3.27469 3.29481 3.33833 3.43113 4.27589 4.36502 4.38779 4.47436 4.59909 5.04871 5.08738 5.17778 5.18717 5.24588 5.32098 5.40847 5.47996 5.49823 5.52079 5.58321 5.70978 5.77076 5.94587 6.14794 6.21108 6.60318 6.79628 6.82144 7.13338 7.26294 7.38045 7.69258 7.89654 7.97601 8.09271 8.78195 8.88826 9.45381 10.92381 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.039930 B = 0.003689 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.060650 B = 7589.135165 C = 8094.287479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.057 3.943 3 H 0.064 0.936 4 C -0.514 4.514 5 H 0.075 0.925 6 C 0.062 3.938 7 N -0.892 5.892 8 Si 0.904 3.096 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.272 1.272 12 C 0.466 3.534 13 O -0.517 6.517 14 O -0.367 6.367 15 C 0.071 3.929 16 C -0.101 4.101 17 H 0.093 0.907 18 C -0.119 4.119 19 C -0.131 4.131 20 C 0.515 3.485 21 O -0.563 6.563 22 N -0.605 5.605 23 C 0.068 3.932 24 C 0.117 3.883 25 H 0.023 0.977 26 H 0.096 0.904 27 H 0.031 0.969 28 H 0.264 0.736 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.078 -1.056 15.584 15.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.038 3.962 3 H 0.082 0.918 4 C -0.552 4.552 5 H 0.094 0.906 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.732 3.268 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.197 1.197 12 C 0.310 3.690 13 O -0.403 6.403 14 O -0.285 6.285 15 C -0.004 4.004 16 C -0.120 4.120 17 H 0.111 0.889 18 C -0.156 4.156 19 C -0.170 4.170 20 C 0.304 3.696 21 O -0.443 6.443 22 N -0.337 5.337 23 C -0.075 4.075 24 C -0.005 4.005 25 H 0.042 0.958 26 H 0.114 0.886 27 H 0.050 0.950 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.109 0.891 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.179 -1.085 15.974 16.054 hybrid contribution 0.376 -0.577 -0.950 1.173 sum -0.803 -1.662 15.024 15.137 Atomic orbital electron populations 1.21729 0.95611 1.00002 1.01713 1.18766 0.94849 0.96990 0.85568 0.91815 1.21131 1.31990 1.13263 0.88793 0.90648 1.24933 0.94890 0.94981 0.99141 1.69876 1.36518 1.22743 1.23899 0.86384 0.79465 0.79231 0.81756 1.20517 1.21117 1.19664 1.25354 0.76549 0.83199 0.83856 1.90505 1.36329 1.26754 1.86752 1.86609 1.70516 1.55928 1.15461 1.22758 0.99089 0.95381 0.83213 1.21511 0.94675 1.02185 0.93634 0.88862 1.21678 1.02035 0.99448 0.92480 1.21620 0.92231 1.03024 1.00162 1.20204 0.89478 0.76761 0.83167 1.90686 1.75576 1.48953 1.29040 1.47228 1.10330 1.66032 1.10125 1.21797 0.80786 1.00578 1.04310 1.21540 0.94738 1.00883 0.83384 0.95832 0.88585 0.95007 0.92663 0.91052 0.91448 0.89826 0.90657 0.88000 0.87940 0.89136 0.92114 0.91858 0.91318 0.89188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 8.90 37.16 0.33 -2.66 16 2 C 0.06 1.39 2.74 -92.92 -0.25 1.14 16 3 H 0.06 1.61 8.14 -51.93 -0.42 1.19 16 4 C -0.51 -14.03 8.37 -34.44 -0.29 -14.32 16 5 H 0.08 2.15 6.76 -52.49 -0.35 1.79 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -24.26 11.32 55.43 0.63 -23.63 16 8 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 12 C 0.47 10.29 7.25 36.01 0.26 10.55 16 13 O -0.52 -12.52 15.21 -18.75 -0.29 -12.80 16 14 O -0.37 -6.51 9.88 -39.25 -0.39 -6.89 16 15 C 0.07 0.95 4.85 37.16 0.18 1.13 16 16 C -0.10 -1.04 2.51 -90.39 -0.23 -1.27 16 17 H 0.09 0.97 8.12 -51.93 -0.42 0.55 16 18 C -0.12 -0.96 5.32 -26.51 -0.14 -1.10 16 19 C -0.13 -1.14 6.03 -28.10 -0.17 -1.31 16 20 C 0.52 6.24 7.47 -11.87 -0.09 6.15 16 21 O -0.56 -8.76 15.95 5.56 0.09 -8.67 16 22 N -0.60 -6.74 3.21 -182.74 -0.59 -7.33 16 23 C 0.07 0.67 10.47 59.85 0.63 1.30 16 24 C 0.12 1.23 5.54 -4.39 -0.02 1.21 16 25 H 0.02 0.45 8.11 -51.93 -0.42 0.03 16 26 H 0.10 2.36 6.07 -51.93 -0.32 2.05 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 29 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 30 H 0.07 0.90 8.11 -51.93 -0.42 0.48 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 33 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.09 1.00 6.59 -51.93 -0.34 0.66 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 39 H 0.09 1.00 8.05 -51.93 -0.42 0.58 16 LS Contribution 322.66 15.07 4.86 4.86 Total: -1.00 -31.34 322.66 -6.64 -37.99 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -6.05 Total: -1.92 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: 0.11 Total: 2.40 kcal Atomic # 7 Polarization: -31.00 SS G_CDS: 0.04 Total: -30.96 kcal Atomic # 8 Polarization: -27.78 SS G_CDS: -0.58 Total: -28.36 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.34 -6.64 -37.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348258073.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.979 kcal (2) G-P(sol) polarization free energy of solvation -31.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds