Wall clock time and date at job start Mon Mar 30 2020 01:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47030 * 2 1 4 4 C 1.50699 * 109.47366 * 239.99198 * 2 1 3 5 5 H 1.07999 * 120.00098 * 240.00240 * 4 2 1 6 6 C 1.37875 * 119.99638 * 60.00020 * 4 2 1 7 7 N 1.31516 * 120.00233 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99835 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46886 * 90.00192 * 8 6 4 10 10 H 1.48506 * 109.46953 * 210.00039 * 8 6 4 11 11 H 1.48502 * 109.47041 * 330.00158 * 8 6 4 12 12 C 1.50708 * 109.46698 * 119.99311 * 2 1 3 13 13 O 1.20828 * 119.99719 * 120.00397 * 12 2 1 14 14 O 1.34228 * 120.00029 * 299.99813 * 12 2 1 15 15 C 1.45197 * 116.99909 * 180.02562 * 14 12 2 16 16 C 1.52996 * 109.47272 * 180.02562 * 15 14 12 17 17 H 1.09000 * 109.59971 * 305.32174 * 16 15 14 18 18 C 1.53348 * 109.60497 * 185.00084 * 16 15 14 19 19 C 1.53071 * 108.42564 * 172.55061 * 18 16 15 20 20 C 1.50177 * 109.89078 * 48.89934 * 19 18 16 21 21 O 1.21278 * 118.24377 * 162.44254 * 20 19 18 22 22 N 1.33355 * 123.50950 * 342.41604 * 20 19 18 23 23 C 1.46499 * 117.94432 * 182.22433 * 22 20 19 24 24 C 1.45750 * 124.10424 * 2.50364 * 22 20 19 25 25 H 1.09004 * 109.47551 * 300.00291 * 1 2 3 26 26 H 1.08999 * 109.47020 * 60.00693 * 1 2 3 27 27 H 1.09005 * 109.47351 * 180.02562 * 1 2 3 28 28 H 0.97005 * 120.00022 * 180.02562 * 7 6 4 29 29 H 1.09007 * 109.47286 * 60.00061 * 15 14 12 30 30 H 1.09003 * 109.47147 * 300.00473 * 15 14 12 31 31 H 1.09003 * 109.67474 * 52.81618 * 18 16 15 32 32 H 1.09003 * 109.67167 * 292.28300 * 18 16 15 33 33 H 1.09000 * 109.39896 * 288.77193 * 19 18 16 34 34 H 1.08999 * 109.32737 * 168.98794 * 19 18 16 35 35 H 1.09002 * 109.47391 * 0.02562 * 23 22 20 36 36 H 1.09001 * 109.46813 * 240.00121 * 23 22 20 37 37 H 1.09004 * 109.47041 * 120.00248 * 23 22 20 38 38 H 1.08999 * 109.30205 * 100.96056 * 24 22 20 39 39 H 1.09005 * 109.30121 * 220.33153 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6532 -1.5886 -1.1311 6 6 1.6993 -0.2396 -2.4826 7 7 0.9436 0.8299 -2.6034 8 14 2.3226 -1.1200 -4.0078 9 1 1.3449 -2.1620 -4.4121 10 1 2.4874 -0.1407 -5.1120 11 1 3.6310 -1.7570 -3.7116 12 6 2.0322 -0.7103 1.2306 13 8 2.7269 -1.6927 1.1199 14 8 1.7079 -0.2516 2.4497 15 6 2.2275 -0.9853 3.5898 16 6 1.7553 -0.3187 4.8835 17 1 2.0361 0.7345 4.8757 18 6 2.4025 -1.0148 6.0869 19 6 2.0636 -0.2159 7.3478 20 6 0.5902 0.0715 7.3899 21 8 0.0998 0.4013 8.4490 22 7 -0.2077 -0.0160 6.3250 23 6 -1.6187 0.3402 6.4933 24 6 0.2348 -0.4494 5.0057 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 0.7089 1.1610 -3.4845 29 1 3.3170 -0.9842 3.5568 30 1 1.8640 -2.0124 3.5571 31 1 3.4838 -1.0487 5.9535 32 1 2.0117 -2.0283 6.1784 33 1 2.6157 0.7238 7.3403 34 1 2.3450 -0.7942 8.2278 35 1 -1.7977 0.6379 7.5265 36 1 -2.2422 -0.5200 6.2494 37 1 -1.8662 1.1682 5.8289 38 1 -0.0545 -1.4890 4.8521 39 1 -0.2406 0.1698 4.2448 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348258073.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:35 Heat of formation + Delta-G solvation = -155.354540 kcal Electronic energy + Delta-G solvation = -20825.000447 eV Core-core repulsion = 17538.415516 eV Total energy + Delta-G solvation = -3286.584931 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.67515 -41.15127 -38.29802 -37.02105 -35.88949 -35.26703 -32.71344 -31.64094 -28.43961 -27.27742 -26.95972 -25.32691 -24.30653 -22.35719 -21.54243 -19.75382 -18.59500 -18.03129 -17.70156 -17.56443 -17.34970 -16.94897 -16.76912 -16.03998 -15.48171 -15.31183 -14.74449 -14.48476 -14.33818 -14.10535 -13.71772 -13.52935 -13.33395 -13.14682 -12.96178 -12.76587 -12.69978 -12.57736 -12.27543 -12.20789 -12.16614 -12.03423 -11.84215 -11.46095 -11.07989 -10.96415 -10.74848 -10.50880 -9.79189 -8.18496 -6.31319 1.43220 1.44357 1.50077 1.54962 1.56001 1.91883 2.00765 2.45341 3.12039 3.41588 3.55181 3.71228 3.74587 4.17334 4.29701 4.31976 4.40866 4.44627 4.50492 4.52263 4.63935 4.65801 4.73149 4.84963 4.87304 4.92314 4.94099 5.03200 5.07356 5.22391 5.35793 5.43236 5.53178 5.72048 5.92394 6.14060 6.38738 6.75596 7.07447 7.10597 7.37850 8.87608 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.039930 B = 0.003689 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.060650 B = 7589.135165 C = 8094.287479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.048 3.952 3 H 0.050 0.950 4 C -0.538 4.538 5 H 0.056 0.944 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.960 3.040 9 H -0.273 1.273 10 H -0.276 1.276 11 H -0.275 1.275 12 C 0.476 3.524 13 O -0.543 6.543 14 O -0.360 6.360 15 C 0.066 3.934 16 C -0.092 4.092 17 H 0.095 0.905 18 C -0.110 4.110 19 C -0.124 4.124 20 C 0.506 3.494 21 O -0.604 6.604 22 N -0.605 5.605 23 C 0.064 3.936 24 C 0.117 3.883 25 H 0.051 0.949 26 H 0.074 0.926 27 H 0.029 0.971 28 H 0.267 0.733 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.103 0.897 32 H 0.081 0.919 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.692 -1.498 15.992 16.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.029 3.971 3 H 0.068 0.932 4 C -0.576 4.576 5 H 0.075 0.925 6 C -0.177 4.177 7 N -0.547 5.547 8 Si 0.786 3.214 9 H -0.198 1.198 10 H -0.201 1.201 11 H -0.200 1.200 12 C 0.321 3.679 13 O -0.432 6.432 14 O -0.277 6.277 15 C -0.008 4.008 16 C -0.111 4.111 17 H 0.113 0.887 18 C -0.148 4.148 19 C -0.163 4.163 20 C 0.297 3.703 21 O -0.487 6.487 22 N -0.336 5.336 23 C -0.078 4.078 24 C -0.005 4.005 25 H 0.070 0.930 26 H 0.093 0.907 27 H 0.048 0.952 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.122 0.878 32 H 0.100 0.900 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.808 -1.515 16.383 16.473 hybrid contribution 0.228 -0.411 -1.003 1.108 sum -0.580 -1.925 15.380 15.511 Atomic orbital electron populations 1.21548 0.94301 0.99894 1.02009 1.18675 0.95969 0.96147 0.86348 0.93184 1.21278 1.32510 1.13235 0.90588 0.92538 1.25605 0.94947 0.95615 1.01509 1.69958 1.36764 1.23364 1.24658 0.85517 0.78754 0.78446 0.78725 1.19848 1.20120 1.20015 1.24699 0.75977 0.82436 0.84789 1.90489 1.37483 1.27816 1.87458 1.86543 1.70085 1.55979 1.15118 1.23124 0.99557 0.95626 0.82466 1.21468 0.94634 1.02295 0.92737 0.88707 1.21658 1.03072 0.99276 0.90765 1.21645 0.89748 1.04012 1.00945 1.20868 0.90864 0.75994 0.82613 1.90670 1.76565 1.50994 1.30496 1.47335 1.10745 1.65403 1.10164 1.21871 0.80649 1.01617 1.03688 1.21563 0.94935 1.01204 0.82839 0.92962 0.90739 0.95198 0.92342 0.90490 0.90990 0.87848 0.89984 0.86687 0.86596 0.90573 0.90687 0.90859 0.90529 0.89766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.33 8.90 71.98 0.64 -4.69 16 2 C 0.05 2.33 2.74 -12.28 -0.03 2.29 16 3 H 0.05 2.56 8.14 -2.39 -0.02 2.54 16 4 C -0.54 -29.66 8.37 25.60 0.21 -29.45 16 5 H 0.06 3.27 6.76 -2.91 -0.02 3.25 16 6 C 0.02 1.24 5.30 84.65 0.45 1.69 16 7 N -0.91 -49.34 11.32 21.45 0.24 -49.10 16 8 Si 0.96 42.86 29.54 68.60 2.03 44.89 16 9 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 10 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 11 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 12 C 0.48 20.74 7.25 71.24 0.52 21.26 16 13 O -0.54 -26.16 15.21 21.96 0.33 -25.82 16 14 O -0.36 -12.21 9.88 -51.39 -0.51 -12.72 16 15 C 0.07 1.64 4.85 71.98 0.35 1.99 16 16 C -0.09 -1.66 2.51 -10.64 -0.03 -1.69 16 17 H 0.09 1.73 8.12 -2.39 -0.02 1.71 16 18 C -0.11 -1.43 5.32 30.73 0.16 -1.27 16 19 C -0.12 -1.83 6.03 29.71 0.18 -1.65 16 20 C 0.51 11.55 7.47 87.71 0.66 12.20 16 21 O -0.60 -18.54 15.95 -3.02 -0.05 -18.59 16 22 N -0.61 -12.57 3.21 -851.26 -2.73 -15.30 16 23 C 0.06 1.21 10.47 127.77 1.34 2.55 16 24 C 0.12 2.22 5.54 86.55 0.48 2.70 16 25 H 0.05 1.97 8.11 -2.38 -0.02 1.95 16 26 H 0.07 3.66 6.07 -2.39 -0.01 3.64 16 27 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 28 H 0.27 13.71 8.31 -92.70 -0.77 12.94 16 29 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 30 H 0.07 1.75 8.11 -2.39 -0.02 1.73 16 31 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.08 1.00 8.12 -2.39 -0.02 0.98 16 33 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.08 1.68 6.59 -2.39 -0.02 1.67 16 36 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 38 H 0.08 1.35 8.10 -2.39 -0.02 1.33 16 39 H 0.08 1.71 8.05 -2.38 -0.02 1.69 16 Total: -1.00 -67.10 322.66 5.27 -61.83 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: 1.03 Total: 8.88 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: 4.92 Total: 5.94 kcal Atomic # 7 Polarization: -61.91 SS G_CDS: -2.49 Total: -64.40 kcal Atomic # 8 Polarization: -56.91 SS G_CDS: -0.22 Total: -57.13 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -67.10 5.27 -61.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348258073.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.526 kcal (2) G-P(sol) polarization free energy of solvation -67.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds