Wall clock time and date at job start Mon Mar 30 2020 01:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46954 * 59.99790 * 8 6 4 10 10 H 1.48496 * 109.47069 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47158 * 300.00368 * 8 6 4 12 12 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 13 13 O 1.20825 * 119.99819 * 240.00052 * 12 2 1 14 14 O 1.34226 * 119.99822 * 59.99316 * 12 2 1 15 15 C 1.45209 * 116.99600 * 179.97438 * 14 12 2 16 16 C 1.53001 * 109.46619 * 180.02562 * 15 14 12 17 17 H 1.08993 * 109.60570 * 305.00023 * 16 15 14 18 18 C 1.53346 * 109.59946 * 184.67648 * 16 15 14 19 19 C 1.53005 * 108.46277 * 172.88782 * 18 16 15 20 20 C 1.50176 * 110.00650 * 48.63457 * 19 18 16 21 21 O 1.21284 * 118.24714 * 162.54720 * 20 19 18 22 22 N 1.33352 * 123.50799 * 342.53648 * 20 19 18 23 23 C 1.46494 * 117.94696 * 182.21907 * 22 20 19 24 24 C 1.45757 * 124.10371 * 2.23710 * 22 20 19 25 25 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 28 28 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 29 29 H 1.08996 * 109.47151 * 300.00581 * 15 14 12 30 30 H 1.09002 * 109.46644 * 60.01070 * 15 14 12 31 31 H 1.08997 * 109.67917 * 292.45316 * 18 16 15 32 32 H 1.09000 * 109.67661 * 52.98487 * 18 16 15 33 33 H 1.09000 * 109.25499 * 288.53286 * 19 18 16 34 34 H 1.08998 * 109.43721 * 168.85926 * 19 18 16 35 35 H 1.09000 * 109.47745 * 270.01526 * 23 22 20 36 36 H 1.08997 * 109.47530 * 30.02007 * 23 22 20 37 37 H 1.09009 * 109.47263 * 150.01675 * 23 22 20 38 38 H 1.08999 * 109.29700 * 220.59282 * 24 22 20 39 39 H 1.08996 * 109.29913 * 101.22514 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.8065 -1.1210 4.0080 10 1 1.8261 -0.4208 5.2204 11 1 1.8261 -2.5204 4.0076 12 6 2.0324 -0.7103 -1.2306 13 8 2.7270 -1.6927 -1.1197 14 8 1.7080 -0.2517 -2.4496 15 6 2.2277 -0.9855 -3.5898 16 6 1.7564 -0.3183 -4.8834 17 1 0.6695 -0.2380 -4.8786 18 6 2.2052 -1.1556 -6.0872 19 6 1.5727 -0.5668 -7.3498 20 6 1.7843 0.9195 -7.3853 21 8 1.6400 1.4948 -8.4432 22 7 2.1223 1.6407 -6.3158 23 6 2.2494 3.0911 -6.4780 24 6 2.3735 1.0764 -4.9956 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 0.7096 1.1617 3.4844 29 1 3.3172 -0.9844 -3.5566 30 1 1.8642 -2.0126 -3.5570 31 1 3.2911 -1.1212 -6.1739 32 1 1.8795 -2.1878 -5.9581 33 1 0.5038 -0.7804 -7.3495 34 1 2.0306 -1.0189 -8.2296 35 1 3.2742 3.3373 -6.7558 36 1 1.5696 3.4303 -7.2596 37 1 1.9988 3.5851 -5.5391 38 1 1.9364 1.7258 -4.2371 39 1 3.4489 1.0089 -4.8314 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348258101.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:40 Heat of formation + Delta-G solvation = -137.431451 kcal Electronic energy + Delta-G solvation = -20794.494439 eV Core-core repulsion = 17508.686711 eV Total energy + Delta-G solvation = -3285.807728 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.69353 -39.60916 -37.16135 -35.61835 -34.41569 -33.93176 -31.07492 -30.39899 -27.59579 -25.94480 -25.24890 -24.28704 -22.83972 -21.43383 -19.85117 -18.90186 -16.87675 -16.69970 -16.60520 -16.14065 -15.98456 -15.63864 -15.46745 -14.55435 -14.48592 -14.14118 -13.46254 -13.40436 -12.95096 -12.87784 -12.60330 -12.43309 -12.18211 -11.84339 -11.63335 -11.33048 -11.26642 -11.09803 -10.99515 -10.83569 -10.74480 -10.39223 -10.11349 -10.09698 -9.84522 -9.18111 -9.10565 -8.90291 -8.48880 -6.14815 -4.20564 2.47657 2.84238 3.23623 3.29106 3.29783 3.32793 3.41765 4.28180 4.36643 4.38827 4.47638 4.59824 5.04678 5.08663 5.16246 5.18634 5.22467 5.32869 5.39828 5.47205 5.50284 5.52281 5.58127 5.67814 5.76668 5.94845 6.14696 6.21364 6.60886 6.80678 6.82782 7.13260 7.26749 7.38156 7.69513 7.89671 7.98206 8.09423 8.77961 8.88529 9.45338 10.92475 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.038948 B = 0.003642 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.730634 B = 7687.068198 C = 8051.580730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.058 3.942 3 H 0.064 0.936 4 C -0.515 4.515 5 H 0.075 0.925 6 C 0.063 3.937 7 N -0.892 5.892 8 Si 0.905 3.095 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.466 3.534 13 O -0.517 6.517 14 O -0.367 6.367 15 C 0.071 3.929 16 C -0.101 4.101 17 H 0.093 0.907 18 C -0.118 4.118 19 C -0.131 4.131 20 C 0.514 3.486 21 O -0.561 6.561 22 N -0.605 5.605 23 C 0.077 3.923 24 C 0.117 3.883 25 H 0.096 0.904 26 H 0.031 0.969 27 H 0.023 0.977 28 H 0.264 0.736 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.055 0.945 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.799 0.374 -15.434 15.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.039 3.961 3 H 0.082 0.918 4 C -0.553 4.553 5 H 0.093 0.907 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.732 3.268 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.201 1.201 12 C 0.310 3.690 13 O -0.403 6.403 14 O -0.285 6.285 15 C -0.004 4.004 16 C -0.120 4.120 17 H 0.111 0.889 18 C -0.156 4.156 19 C -0.171 4.171 20 C 0.303 3.697 21 O -0.441 6.441 22 N -0.337 5.337 23 C -0.066 4.066 24 C -0.006 4.006 25 H 0.114 0.886 26 H 0.050 0.950 27 H 0.042 0.958 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.074 0.926 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.108 0.892 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.864 0.469 -15.821 15.852 hybrid contribution 0.433 -0.563 0.919 1.161 sum 1.298 -0.094 -14.903 14.959 Atomic orbital electron populations 1.21733 0.95608 1.00037 1.01722 1.18756 0.94841 0.96951 0.85550 0.91841 1.21091 1.32069 1.13311 0.88810 0.90706 1.24929 0.94855 0.94994 0.99127 1.69862 1.36413 1.22743 1.24016 0.86438 0.79302 0.79691 0.81333 1.20067 1.21198 1.20079 1.25354 0.76522 0.83228 0.83856 1.90504 1.36347 1.26739 1.86752 1.86610 1.70534 1.55915 1.15464 1.22762 0.98960 0.95513 0.83208 1.21477 1.02447 0.94448 0.93654 0.88888 1.21653 1.01496 1.00003 0.92436 1.21606 1.03940 0.91386 1.00127 1.20188 0.76169 0.90215 0.83153 1.90702 1.52325 1.71904 1.29159 1.47267 1.68223 1.08320 1.09915 1.21732 1.02196 0.79763 1.02924 1.21546 1.00782 0.94967 0.83305 0.88586 0.95006 0.95797 0.92601 0.91436 0.91063 0.90690 0.89802 0.88052 0.87952 0.92645 0.90363 0.90853 0.89153 0.91345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 8.90 37.16 0.33 -2.69 16 2 C 0.06 1.41 2.74 -92.92 -0.25 1.16 16 3 H 0.06 1.59 8.14 -51.93 -0.42 1.17 16 4 C -0.51 -14.05 8.37 -34.44 -0.29 -14.34 16 5 H 0.07 2.13 6.76 -52.49 -0.35 1.77 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.23 11.32 55.43 0.63 -23.61 16 8 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 C 0.47 10.27 7.25 36.01 0.26 10.53 16 13 O -0.52 -12.50 15.21 -18.75 -0.29 -12.79 16 14 O -0.37 -6.49 9.85 -39.25 -0.39 -6.87 16 15 C 0.07 0.95 4.84 37.16 0.18 1.13 16 16 C -0.10 -1.04 2.50 -90.48 -0.23 -1.27 16 17 H 0.09 0.97 8.13 -51.93 -0.42 0.55 16 18 C -0.12 -0.96 5.33 -26.55 -0.14 -1.10 16 19 C -0.13 -1.14 6.03 -28.13 -0.17 -1.31 16 20 C 0.51 6.25 7.47 -11.87 -0.09 6.16 16 21 O -0.56 -8.80 16.21 5.55 0.09 -8.71 16 22 N -0.61 -6.72 3.21 -182.86 -0.59 -7.31 16 23 C 0.08 0.76 10.22 59.84 0.61 1.37 16 24 C 0.12 1.21 5.52 -4.49 -0.02 1.19 16 25 H 0.10 2.37 6.07 -51.93 -0.32 2.06 16 26 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.02 0.47 8.11 -51.93 -0.42 0.04 16 28 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 29 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 30 H 0.07 0.95 8.13 -51.93 -0.42 0.53 16 31 H 0.07 0.59 8.13 -51.93 -0.42 0.16 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.85 7.20 -51.93 -0.37 0.47 16 37 H 0.07 0.60 7.86 -51.92 -0.41 0.19 16 38 H 0.09 0.98 7.85 -51.93 -0.41 0.58 16 39 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 LS Contribution 322.74 15.07 4.86 4.86 Total: -1.00 -31.39 322.74 -6.66 -38.05 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -6.06 Total: -2.04 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: 0.10 Total: 2.41 kcal Atomic # 7 Polarization: -30.96 SS G_CDS: 0.04 Total: -30.92 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -0.58 Total: -28.37 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.39 -6.66 -38.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348258101.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.378 kcal (2) G-P(sol) polarization free energy of solvation -31.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds