Wall clock time and date at job start Mon Mar 30 2020 01:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46954 * 59.99790 * 8 6 4 10 10 H 1.48496 * 109.47069 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47158 * 300.00368 * 8 6 4 12 12 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 13 13 O 1.20825 * 119.99819 * 240.00052 * 12 2 1 14 14 O 1.34226 * 119.99822 * 59.99316 * 12 2 1 15 15 C 1.45209 * 116.99600 * 179.97438 * 14 12 2 16 16 C 1.53001 * 109.46619 * 180.02562 * 15 14 12 17 17 H 1.08993 * 109.60570 * 305.00023 * 16 15 14 18 18 C 1.53346 * 109.59946 * 184.67648 * 16 15 14 19 19 C 1.53005 * 108.46277 * 172.88782 * 18 16 15 20 20 C 1.50176 * 110.00650 * 48.63457 * 19 18 16 21 21 O 1.21284 * 118.24714 * 162.54720 * 20 19 18 22 22 N 1.33352 * 123.50799 * 342.53648 * 20 19 18 23 23 C 1.46494 * 117.94696 * 182.21907 * 22 20 19 24 24 C 1.45757 * 124.10371 * 2.23710 * 22 20 19 25 25 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 28 28 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 29 29 H 1.08996 * 109.47151 * 300.00581 * 15 14 12 30 30 H 1.09002 * 109.46644 * 60.01070 * 15 14 12 31 31 H 1.08997 * 109.67917 * 292.45316 * 18 16 15 32 32 H 1.09000 * 109.67661 * 52.98487 * 18 16 15 33 33 H 1.09000 * 109.25499 * 288.53286 * 19 18 16 34 34 H 1.08998 * 109.43721 * 168.85926 * 19 18 16 35 35 H 1.09000 * 109.47745 * 270.01526 * 23 22 20 36 36 H 1.08997 * 109.47530 * 30.02007 * 23 22 20 37 37 H 1.09009 * 109.47263 * 150.01675 * 23 22 20 38 38 H 1.08999 * 109.29700 * 220.59282 * 24 22 20 39 39 H 1.08996 * 109.29913 * 101.22514 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.8065 -1.1210 4.0080 10 1 1.8261 -0.4208 5.2204 11 1 1.8261 -2.5204 4.0076 12 6 2.0324 -0.7103 -1.2306 13 8 2.7270 -1.6927 -1.1197 14 8 1.7080 -0.2517 -2.4496 15 6 2.2277 -0.9855 -3.5898 16 6 1.7564 -0.3183 -4.8834 17 1 0.6695 -0.2380 -4.8786 18 6 2.2052 -1.1556 -6.0872 19 6 1.5727 -0.5668 -7.3498 20 6 1.7843 0.9195 -7.3853 21 8 1.6400 1.4948 -8.4432 22 7 2.1223 1.6407 -6.3158 23 6 2.2494 3.0911 -6.4780 24 6 2.3735 1.0764 -4.9956 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 0.7096 1.1617 3.4844 29 1 3.3172 -0.9844 -3.5566 30 1 1.8642 -2.0126 -3.5570 31 1 3.2911 -1.1212 -6.1739 32 1 1.8795 -2.1878 -5.9581 33 1 0.5038 -0.7804 -7.3495 34 1 2.0306 -1.0189 -8.2296 35 1 3.2742 3.3373 -6.7558 36 1 1.5696 3.4303 -7.2596 37 1 1.9988 3.5851 -5.5391 38 1 1.9364 1.7258 -4.2371 39 1 3.4489 1.0089 -4.8314 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348258101.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:40 Heat of formation + Delta-G solvation = -155.863191 kcal Electronic energy + Delta-G solvation = -20795.293699 eV Core-core repulsion = 17508.686711 eV Total energy + Delta-G solvation = -3286.606988 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.67038 -41.14585 -38.29877 -37.02083 -35.88843 -35.27847 -32.71526 -31.64596 -28.44510 -27.27170 -26.97399 -25.32364 -24.31947 -22.37114 -21.53525 -19.76018 -18.58241 -18.01592 -17.74465 -17.49417 -17.29148 -16.98910 -16.79266 -16.12055 -15.36384 -15.28978 -14.72861 -14.65611 -14.29345 -14.00517 -13.76814 -13.56419 -13.30254 -13.17538 -12.95681 -12.81969 -12.67180 -12.58431 -12.29912 -12.18263 -12.15185 -12.02476 -11.83100 -11.46104 -11.08821 -10.96285 -10.77061 -10.50587 -9.80696 -8.18200 -6.31064 1.44383 1.45206 1.50353 1.53451 1.56353 1.91897 2.00309 2.45503 3.12348 3.42217 3.55752 3.71480 3.74057 4.17524 4.29923 4.31365 4.39913 4.43073 4.50001 4.52728 4.62379 4.65425 4.73079 4.84283 4.87122 4.89934 4.94023 5.03601 5.06978 5.22619 5.35926 5.42979 5.53344 5.71984 5.92108 6.14075 6.39029 6.75522 7.07499 7.10724 7.37998 8.87728 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.038948 B = 0.003642 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.730634 B = 7687.068198 C = 8051.580730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.049 3.951 3 H 0.052 0.948 4 C -0.540 4.540 5 H 0.057 0.943 6 C 0.024 3.976 7 N -0.909 5.909 8 Si 0.960 3.040 9 H -0.274 1.274 10 H -0.276 1.276 11 H -0.274 1.274 12 C 0.475 3.525 13 O -0.543 6.543 14 O -0.360 6.360 15 C 0.067 3.933 16 C -0.092 4.092 17 H 0.095 0.905 18 C -0.110 4.110 19 C -0.124 4.124 20 C 0.505 3.495 21 O -0.604 6.604 22 N -0.605 5.605 23 C 0.073 3.927 24 C 0.116 3.884 25 H 0.074 0.926 26 H 0.028 0.972 27 H 0.050 0.950 28 H 0.267 0.733 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.104 0.896 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.822 -0.343 -15.837 15.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.030 3.970 3 H 0.070 0.930 4 C -0.577 4.577 5 H 0.075 0.925 6 C -0.176 4.176 7 N -0.547 5.547 8 Si 0.785 3.215 9 H -0.199 1.199 10 H -0.201 1.201 11 H -0.199 1.199 12 C 0.321 3.679 13 O -0.432 6.432 14 O -0.277 6.277 15 C -0.008 4.008 16 C -0.111 4.111 17 H 0.113 0.887 18 C -0.147 4.147 19 C -0.164 4.164 20 C 0.296 3.704 21 O -0.487 6.487 22 N -0.336 5.336 23 C -0.070 4.070 24 C -0.006 4.006 25 H 0.093 0.907 26 H 0.047 0.953 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.122 0.878 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.108 0.892 38 H 0.104 0.896 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.881 -0.232 -16.226 16.252 hybrid contribution 0.433 -0.288 0.970 1.101 sum 1.313 -0.520 -15.256 15.321 Atomic orbital electron populations 1.21555 0.94449 0.99841 1.01982 1.18664 0.95830 0.96222 0.86330 0.93024 1.21252 1.32587 1.13301 0.90600 0.92526 1.25601 0.94914 0.95628 1.01492 1.69946 1.36662 1.23368 1.24729 0.85578 0.78746 0.78709 0.78441 1.19923 1.20098 1.19929 1.24699 0.75955 0.82461 0.84791 1.90488 1.37506 1.27797 1.87456 1.86544 1.70087 1.55966 1.15111 1.23124 0.99345 0.95828 0.82468 1.21435 1.02520 0.94440 0.92740 0.88663 1.21634 1.01882 1.00480 0.90731 1.21627 1.05019 0.88807 1.00910 1.20859 0.75360 0.91632 0.82593 1.90684 1.54335 1.72995 1.30637 1.47372 1.67490 1.08799 1.09958 1.21813 1.02302 0.79481 1.03404 1.21574 1.01234 0.95050 0.82767 0.90683 0.95311 0.93057 0.92328 0.91015 0.90489 0.90063 0.87796 0.86703 0.86632 0.92038 0.91609 0.89228 0.89629 0.90643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.40 8.90 71.98 0.64 -4.76 16 2 C 0.05 2.37 2.74 -12.29 -0.03 2.33 16 3 H 0.05 2.62 8.14 -2.39 -0.02 2.60 16 4 C -0.54 -29.69 8.37 25.60 0.21 -29.47 16 5 H 0.06 3.27 6.76 -2.91 -0.02 3.25 16 6 C 0.02 1.27 5.30 84.66 0.45 1.72 16 7 N -0.91 -49.26 11.32 21.45 0.24 -49.01 16 8 Si 0.96 42.80 29.54 68.60 2.03 44.82 16 9 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 10 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 11 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 12 C 0.48 20.68 7.25 71.24 0.52 21.20 16 13 O -0.54 -26.10 15.21 21.97 0.33 -25.76 16 14 O -0.36 -12.15 9.85 -51.38 -0.51 -12.66 16 15 C 0.07 1.64 4.84 71.98 0.35 1.98 16 16 C -0.09 -1.65 2.50 -10.71 -0.03 -1.68 16 17 H 0.10 1.72 8.13 -2.39 -0.02 1.70 16 18 C -0.11 -1.43 5.33 30.71 0.16 -1.26 16 19 C -0.12 -1.84 6.03 29.69 0.18 -1.66 16 20 C 0.51 11.59 7.47 87.71 0.66 12.24 16 21 O -0.60 -18.67 16.21 -3.04 -0.05 -18.72 16 22 N -0.61 -12.59 3.21 -851.63 -2.73 -15.32 16 23 C 0.07 1.37 10.22 127.77 1.31 2.68 16 24 C 0.12 2.19 5.52 86.49 0.48 2.67 16 25 H 0.07 3.70 6.07 -2.39 -0.01 3.68 16 26 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.05 1.96 8.11 -2.38 -0.02 1.94 16 28 H 0.27 13.74 8.31 -92.71 -0.77 12.97 16 29 H 0.07 1.74 8.10 -2.39 -0.02 1.72 16 30 H 0.08 1.86 8.13 -2.39 -0.02 1.84 16 31 H 0.08 1.00 8.13 -2.39 -0.02 0.98 16 32 H 0.10 1.01 8.14 -2.39 -0.02 1.00 16 33 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.12 1.46 8.14 -2.39 -0.02 1.45 16 35 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.07 1.42 7.20 -2.39 -0.02 1.40 16 37 H 0.09 1.37 7.86 -2.38 -0.02 1.35 16 38 H 0.09 1.72 7.85 -2.39 -0.02 1.70 16 39 H 0.08 1.34 8.09 -2.39 -0.02 1.32 16 Total: -1.00 -67.08 322.74 5.23 -61.85 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: 1.03 Total: 8.81 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: 4.89 Total: 5.99 kcal Atomic # 7 Polarization: -61.84 SS G_CDS: -2.49 Total: -64.34 kcal Atomic # 8 Polarization: -56.92 SS G_CDS: -0.22 Total: -57.15 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.82 kcal Total: -67.08 5.23 -61.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348258101.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.012 kcal (2) G-P(sol) polarization free energy of solvation -67.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds