Wall clock time and date at job start Mon Mar 30 2020 01:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.46988 * 2 1 4 4 C 1.50695 * 109.47250 * 240.00392 * 2 1 3 5 5 H 1.07997 * 119.99912 * 275.10231 * 4 2 1 6 6 C 1.37881 * 120.00299 * 95.09730 * 4 2 1 7 7 N 1.31520 * 120.00142 * 184.90942 * 6 4 2 8 8 Si 1.86802 * 119.99930 * 4.91471 * 6 4 2 9 9 H 1.48497 * 109.46906 * 84.82233 * 8 6 4 10 10 H 1.48499 * 109.47189 * 204.81968 * 8 6 4 11 11 H 1.48499 * 109.47156 * 324.82368 * 8 6 4 12 12 C 1.50700 * 109.47155 * 119.99761 * 2 1 3 13 13 O 1.20825 * 119.99434 * 120.00333 * 12 2 1 14 14 O 1.34220 * 120.00444 * 300.00177 * 12 2 1 15 15 C 1.45198 * 117.00380 * 179.97438 * 14 12 2 16 16 C 1.52994 * 109.47440 * 180.02562 * 15 14 12 17 17 H 1.09002 * 109.60244 * 55.32398 * 16 15 14 18 18 C 1.53326 * 109.75394 * 175.82894 * 16 15 14 19 19 C 1.53066 * 108.43612 * 187.46061 * 18 16 15 20 20 C 1.50179 * 109.82302 * 310.96971 * 19 18 16 21 21 O 1.21282 * 118.24348 * 197.61956 * 20 19 18 22 22 N 1.33349 * 123.50834 * 17.60005 * 20 19 18 23 23 C 1.46496 * 117.94497 * 177.79904 * 22 20 19 24 24 C 1.45753 * 124.10687 * 357.82323 * 22 20 19 25 25 H 1.09000 * 109.47174 * 175.05680 * 1 2 3 26 26 H 1.09004 * 109.47297 * 295.06035 * 1 2 3 27 27 H 1.09004 * 109.47507 * 55.06007 * 1 2 3 28 28 H 0.97000 * 119.99663 * 180.02562 * 7 6 4 29 29 H 1.08999 * 109.47046 * 59.99943 * 15 14 12 30 30 H 1.09001 * 109.46976 * 299.99985 * 15 14 12 31 31 H 1.09002 * 109.74369 * 67.68075 * 18 16 15 32 32 H 1.09002 * 109.59667 * 307.15920 * 18 16 15 33 33 H 1.08995 * 109.40014 * 190.88101 * 19 18 16 34 34 H 1.09004 * 109.39806 * 71.05741 * 19 18 16 35 35 H 1.08994 * 109.47548 * 359.97438 * 23 22 20 36 36 H 1.09000 * 109.47216 * 120.00332 * 23 22 20 37 37 H 1.09001 * 109.47098 * 239.99715 * 23 22 20 38 38 H 1.08999 * 109.30146 * 139.36570 * 24 22 20 39 39 H 1.09003 * 109.30150 * 258.94683 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.1339 -1.7855 -1.2296 6 6 2.3622 0.0124 -2.3574 7 7 2.7080 -0.6127 -3.4617 8 14 2.3180 1.8795 -2.3157 9 1 3.6037 2.3931 -1.7788 10 1 2.1123 2.4006 -3.6910 11 1 1.2028 2.3289 -1.4441 12 6 2.0323 -0.7104 1.2305 13 8 2.7270 -1.6927 1.1195 14 8 1.7081 -0.2518 2.4496 15 6 2.2268 -0.9863 3.5896 16 6 1.7548 -0.3198 4.8834 17 1 0.6674 -0.2446 4.8804 18 6 2.2116 -1.1486 6.0898 19 6 1.5696 -0.5634 7.3501 20 6 1.7742 0.9240 7.3822 21 8 1.6259 1.5011 8.4386 22 7 2.1106 1.6441 6.3115 23 6 2.2311 3.0955 6.4704 24 6 2.3655 1.0779 4.9928 25 1 -0.3633 -1.0238 -0.0886 26 1 -0.3634 0.4353 0.9309 27 1 -0.3634 0.5886 -0.8424 28 1 2.9404 -0.1041 -4.2543 29 1 3.3163 -0.9860 3.5568 30 1 1.8625 -2.0131 3.5565 31 1 3.2972 -1.1048 6.1768 32 1 1.8946 -2.1838 5.9632 33 1 2.0285 -1.0112 8.2315 34 1 0.5017 -0.7820 7.3473 35 1 2.0119 3.3674 7.5029 36 1 3.2457 3.4054 6.2202 37 1 1.5249 3.5936 5.8061 38 1 1.9262 1.7236 4.2324 39 1 3.4414 1.0113 4.8311 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348258102.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:42 Heat of formation + Delta-G solvation = -156.602479 kcal Electronic energy + Delta-G solvation = -20871.690324 eV Core-core repulsion = 17585.051278 eV Total energy + Delta-G solvation = -3286.639046 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.68429 -41.17345 -38.31035 -37.02033 -35.76745 -35.26183 -33.42265 -31.71867 -28.44304 -27.30219 -27.00156 -25.33015 -24.25471 -22.34880 -21.37282 -19.76358 -19.25246 -18.11561 -17.76537 -17.53258 -17.29821 -17.02273 -16.72067 -16.04545 -15.37750 -15.27018 -14.91791 -14.52959 -14.29835 -14.18649 -13.82571 -13.79825 -13.47588 -13.14609 -13.02016 -12.96263 -12.69180 -12.62229 -12.23228 -12.19390 -12.17820 -11.84437 -11.76838 -11.48354 -11.27021 -10.97063 -10.76002 -10.74493 -9.78637 -8.31051 -6.40335 1.37389 1.39619 1.47610 1.53276 1.56079 1.86195 2.01015 2.34163 3.05724 3.41499 3.55716 3.71460 3.73967 4.15374 4.27397 4.30622 4.37776 4.40709 4.43222 4.51038 4.51935 4.64087 4.65266 4.71427 4.82222 4.87550 4.91454 4.93238 5.06344 5.11828 5.23217 5.36439 5.43284 5.52413 5.58653 6.22233 6.38949 6.69305 7.07772 7.08380 7.24617 8.85856 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.030223 B = 0.004142 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.239317 B = 6757.719429 C = 7315.406270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.017 3.983 3 H 0.081 0.919 4 C -0.518 4.518 5 H 0.030 0.970 6 C 0.015 3.985 7 N -0.944 5.944 8 Si 0.941 3.059 9 H -0.265 1.265 10 H -0.283 1.283 11 H -0.224 1.224 12 C 0.471 3.529 13 O -0.541 6.541 14 O -0.357 6.357 15 C 0.066 3.934 16 C -0.091 4.091 17 H 0.099 0.901 18 C -0.111 4.111 19 C -0.124 4.124 20 C 0.506 3.494 21 O -0.605 6.605 22 N -0.605 5.605 23 C 0.064 3.936 24 C 0.116 3.884 25 H 0.042 0.958 26 H 0.075 0.925 27 H 0.061 0.939 28 H 0.270 0.730 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.258 5.563 19.650 20.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.002 4.002 3 H 0.099 0.901 4 C -0.556 4.556 5 H 0.048 0.952 6 C -0.183 4.183 7 N -0.583 5.583 8 Si 0.762 3.238 9 H -0.190 1.190 10 H -0.209 1.209 11 H -0.147 1.147 12 C 0.315 3.685 13 O -0.429 6.429 14 O -0.274 6.274 15 C -0.008 4.008 16 C -0.110 4.110 17 H 0.117 0.883 18 C -0.149 4.149 19 C -0.163 4.163 20 C 0.296 3.704 21 O -0.488 6.488 22 N -0.336 5.336 23 C -0.078 4.078 24 C -0.007 4.007 25 H 0.061 0.939 26 H 0.094 0.906 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.121 0.879 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.107 0.893 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.064 5.554 19.988 20.970 hybrid contribution 0.523 0.201 -0.692 0.890 sum -2.541 5.755 19.296 20.296 Atomic orbital electron populations 1.21825 0.93114 1.01502 1.02123 1.19146 0.96788 0.97109 0.87172 0.90100 1.20855 1.44645 0.94088 0.96003 0.95169 1.26004 0.93459 1.04535 0.94324 1.70046 1.46844 1.38570 1.02809 0.85841 0.80823 0.78499 0.78602 1.19030 1.20918 1.14652 1.24725 0.76300 0.82696 0.84736 1.90548 1.37106 1.27855 1.87425 1.86518 1.70108 1.55875 1.14890 1.23114 0.99331 0.95847 0.82524 1.21431 1.02685 0.94391 0.92516 0.88300 1.21648 1.01727 1.00627 0.90897 1.21639 1.05010 0.88806 1.00855 1.20860 0.75222 0.91650 0.82619 1.90674 1.54377 1.72849 1.30854 1.47327 1.67545 1.08767 1.09970 1.21868 1.02803 0.79411 1.03726 1.21560 1.01210 0.94966 0.82944 0.93922 0.90622 0.91978 0.92100 0.91218 0.90599 0.90192 0.87945 0.86773 0.86573 0.90683 0.90800 0.90631 0.89263 0.90777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.66 9.14 71.98 0.66 -4.00 16 2 C 0.02 0.76 2.40 -12.29 -0.03 0.73 16 3 H 0.08 3.27 5.29 -2.38 -0.01 3.26 16 4 C -0.52 -29.22 8.36 25.60 0.21 -29.01 16 5 H 0.03 1.99 7.62 -2.91 -0.02 1.97 16 6 C 0.01 0.83 5.47 84.65 0.46 1.29 16 7 N -0.94 -57.88 13.96 21.45 0.30 -57.58 16 8 Si 0.94 40.19 26.99 68.60 1.85 42.05 16 9 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 10 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.22 -8.19 6.82 99.48 0.68 -7.51 16 12 C 0.47 19.49 7.25 71.24 0.52 20.00 16 13 O -0.54 -26.47 15.52 21.97 0.34 -26.13 16 14 O -0.36 -10.96 9.74 -51.32 -0.50 -11.46 16 15 C 0.07 1.53 4.85 71.98 0.35 1.88 16 16 C -0.09 -1.48 2.51 -10.71 -0.03 -1.50 16 17 H 0.10 1.54 8.12 -2.39 -0.02 1.52 16 18 C -0.11 -1.35 5.33 30.73 0.16 -1.18 16 19 C -0.12 -1.70 6.03 29.71 0.18 -1.52 16 20 C 0.51 10.93 7.47 87.72 0.66 11.58 16 21 O -0.60 -17.92 15.95 -3.03 -0.05 -17.97 16 22 N -0.61 -11.60 3.21 -851.63 -2.73 -14.33 16 23 C 0.06 1.11 10.47 127.77 1.34 2.45 16 24 C 0.12 1.97 5.52 86.49 0.48 2.44 16 25 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.07 2.19 8.00 -2.39 -0.02 2.17 16 27 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 29 H 0.07 1.65 8.11 -2.39 -0.02 1.63 16 30 H 0.08 1.76 8.13 -2.39 -0.02 1.74 16 31 H 0.08 0.94 8.13 -2.39 -0.02 0.92 16 32 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.07 1.56 6.59 -2.39 -0.02 1.55 16 36 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.09 1.55 8.02 -2.39 -0.02 1.53 16 39 H 0.07 1.21 8.09 -2.39 -0.02 1.19 16 Total: -1.00 -75.06 322.60 5.17 -69.89 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 1.00 Total: 12.37 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: 4.96 Total: 3.17 kcal Atomic # 7 Polarization: -69.47 SS G_CDS: -2.43 Total: -71.91 kcal Atomic # 8 Polarization: -55.35 SS G_CDS: -0.21 Total: -55.56 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 1.85 Total: 42.05 kcal Total: -75.06 5.17 -69.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348258102.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.713 kcal (2) G-P(sol) polarization free energy of solvation -75.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds