Wall clock time and date at job start Mon Mar 30 2020 01:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34232 * 116.99601 * 2 1 4 4 O 1.20822 * 119.99918 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99815 * 180.02562 * 3 2 1 6 6 H 1.08997 * 110.67475 * 61.77869 * 5 3 2 7 7 C 1.54889 * 110.75652 * 298.54516 * 5 3 2 8 8 C 1.54265 * 104.19931 * 203.56050 * 7 5 3 9 9 C 1.53877 * 106.59602 * 23.60791 * 8 7 5 10 10 H 1.09007 * 110.02934 * 240.66947 * 9 8 7 11 11 N 1.46499 * 110.03067 * 119.28892 * 9 8 7 12 12 C 1.34777 * 120.00199 * 87.09341 * 11 9 8 13 13 O 1.21283 * 119.99750 * 359.97438 * 12 11 9 14 14 C 1.50702 * 119.99928 * 180.27479 * 12 11 9 15 15 H 1.09004 * 109.46965 * 299.72211 * 14 12 11 16 16 C 1.53000 * 109.47245 * 59.72201 * 14 12 11 17 17 C 1.50700 * 109.46869 * 179.72354 * 14 12 11 18 18 H 1.07997 * 120.00357 * 359.97438 * 17 14 12 19 19 C 1.37876 * 119.99656 * 179.97438 * 17 14 12 20 20 N 1.31514 * 119.99993 * 0.02562 * 19 17 14 21 21 Si 1.86796 * 119.99954 * 179.97438 * 19 17 14 22 22 H 1.48501 * 109.46949 * 60.00026 * 21 19 17 23 23 H 1.48499 * 109.47367 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47219 * 300.00259 * 21 19 17 25 25 C 1.54263 * 106.63890 * 359.97438 * 9 8 7 26 26 H 1.09001 * 109.47594 * 60.00488 * 1 2 3 27 27 H 1.09012 * 109.46926 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47284 * 299.99787 * 1 2 3 29 29 H 1.09000 * 110.48792 * 84.87811 * 7 5 3 30 30 H 1.09004 * 110.59662 * 322.29636 * 7 5 3 31 31 H 1.08997 * 110.03081 * 264.32551 * 8 7 5 32 32 H 1.08995 * 110.03334 * 142.89372 * 8 7 5 33 33 H 0.97000 * 119.99484 * 267.08438 * 11 9 8 34 34 H 1.09001 * 109.46739 * 299.99817 * 16 14 12 35 35 H 1.08996 * 109.46783 * 59.99559 * 16 14 12 36 36 H 1.08994 * 109.47175 * 180.02562 * 16 14 12 37 37 H 0.97009 * 119.99880 * 180.02562 * 20 19 17 38 38 H 1.09002 * 110.48505 * 95.09777 * 25 9 8 39 39 H 1.09001 * 110.48777 * 217.73563 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2750 -0.0006 6 1 3.9754 0.8137 -0.8994 7 6 4.1511 0.6123 1.2713 8 6 5.5344 1.2738 1.4406 9 6 5.4656 2.6286 0.7142 10 1 6.2037 2.6602 -0.0874 11 7 5.7076 3.7191 1.6620 12 6 6.9681 4.1205 1.9200 13 8 7.9021 3.5785 1.3678 14 6 7.2173 5.2382 2.8997 15 1 6.7225 6.1445 2.5504 16 6 6.6599 4.8487 4.2703 17 6 8.6994 5.4864 3.0122 18 1 9.3917 4.8938 2.4326 19 6 9.1716 6.4700 3.8550 20 7 8.3286 7.1913 4.5612 21 14 11.0088 6.7773 3.9950 22 1 11.5503 7.1544 2.6647 23 1 11.2544 7.8787 4.9603 24 1 11.6823 5.5426 4.4717 25 6 4.0434 2.7436 0.1278 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 4.2575 -0.4628 1.1269 30 1 3.5208 0.8195 2.1362 31 1 6.3052 0.6478 0.9911 32 1 5.7478 1.4278 2.4984 33 1 4.9606 4.1523 2.1037 34 1 5.5879 4.6692 4.1889 35 1 7.1546 3.9424 4.6195 36 1 6.8397 5.6573 4.9788 37 1 8.6608 7.8836 5.1540 38 1 3.3947 3.2974 0.8065 39 1 4.0718 3.2233 -0.8506 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350975810.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:12 Heat of formation + Delta-G solvation = -161.945557 kcal Electronic energy + Delta-G solvation = -20717.354967 eV Core-core repulsion = 17430.484228 eV Total energy + Delta-G solvation = -3286.870739 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.74292 -40.70210 -38.69798 -37.41316 -35.74305 -34.62085 -32.44354 -30.30078 -29.39023 -27.98869 -27.17585 -24.55814 -23.60376 -21.66817 -21.18875 -20.68117 -18.80657 -18.29001 -17.81732 -17.78927 -17.38369 -16.86380 -16.32315 -16.14363 -15.64600 -14.96017 -14.67872 -14.47138 -14.31696 -14.05785 -13.54718 -13.23929 -13.23166 -12.95144 -12.84051 -12.75119 -12.59035 -12.51806 -12.20006 -12.17641 -12.00317 -11.94273 -11.77091 -11.62569 -11.36948 -11.03484 -10.58457 -10.26415 -9.90664 -8.14000 -6.24547 1.13570 1.41738 1.43322 1.51810 1.70482 1.96854 2.38040 2.57145 3.15570 3.33496 3.48440 3.86674 4.07519 4.26233 4.32107 4.34271 4.35375 4.40699 4.43430 4.51139 4.58178 4.73791 4.76307 4.87069 4.95697 5.02266 5.06789 5.15456 5.22489 5.26342 5.37463 5.51170 5.71046 5.78516 5.96352 6.23085 6.69907 6.75976 6.88489 7.41364 7.58586 8.91691 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.047191 B = 0.003494 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.187126 B = 8012.362826 C = 8233.056588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.359 6.359 3 C 0.474 3.526 4 O -0.538 6.538 5 C -0.081 4.081 6 H 0.143 0.857 7 C -0.096 4.096 8 C -0.132 4.132 9 C 0.136 3.864 10 H 0.076 0.924 11 N -0.722 5.722 12 C 0.523 3.477 13 O -0.584 6.584 14 C 0.022 3.978 15 H 0.038 0.962 16 C -0.118 4.118 17 C -0.529 4.529 18 H 0.050 0.950 19 C 0.018 3.982 20 N -0.913 5.913 21 Si 0.956 3.044 22 H -0.276 1.276 23 H -0.275 1.275 24 H -0.275 1.275 25 C -0.105 4.105 26 H 0.061 0.939 27 H 0.132 0.868 28 H 0.059 0.941 29 H 0.103 0.897 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.407 0.593 34 H 0.050 0.950 35 H 0.023 0.977 36 H 0.069 0.931 37 H 0.264 0.736 38 H 0.080 0.920 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.895 -15.003 -7.553 23.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.275 6.275 3 C 0.318 3.682 4 O -0.427 6.427 5 C -0.100 4.100 6 H 0.161 0.839 7 C -0.134 4.134 8 C -0.171 4.171 9 C 0.031 3.969 10 H 0.094 0.906 11 N -0.375 5.375 12 C 0.312 3.688 13 O -0.463 6.463 14 C 0.001 3.999 15 H 0.056 0.944 16 C -0.176 4.176 17 C -0.567 4.567 18 H 0.068 0.932 19 C -0.181 4.181 20 N -0.552 5.552 21 Si 0.781 3.219 22 H -0.202 1.202 23 H -0.200 1.200 24 H -0.201 1.201 25 C -0.143 4.143 26 H 0.080 0.920 27 H 0.150 0.850 28 H 0.078 0.922 29 H 0.121 0.879 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.243 0.757 34 H 0.068 0.932 35 H 0.042 0.958 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.098 0.902 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.471 -14.959 -7.815 22.896 hybrid contribution 0.481 0.841 0.372 1.038 sum -14.990 -14.118 -7.442 21.895 Atomic orbital electron populations 1.23550 0.74981 1.05691 1.02426 1.86512 1.24788 1.32618 1.83547 1.23854 0.92198 0.81158 0.70981 1.90673 1.67884 1.37468 1.46694 1.22038 0.86022 0.98275 1.03657 0.83890 1.22265 0.94702 1.01238 0.95161 1.22557 0.98034 0.95577 1.00925 1.21621 0.96958 0.86699 0.91573 0.90610 1.46199 1.07751 1.37591 1.45913 1.21455 0.82128 0.83697 0.81478 1.90497 1.44381 1.58385 1.53076 1.18809 0.97133 0.91716 0.92242 0.94416 1.21541 0.97285 1.00468 0.98350 1.21285 0.92290 1.18203 1.24963 0.93190 1.25616 1.02074 0.95368 0.95023 1.69953 1.35358 1.22316 1.27583 0.85647 0.80527 0.77769 0.77918 1.20155 1.20030 1.20064 1.22489 0.93880 0.95186 1.02773 0.91980 0.85023 0.92209 0.87890 0.91137 0.90456 0.92179 0.75720 0.93151 0.95752 0.91238 0.92638 0.90176 0.89453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.55 113.37 1.20 1.51 16 2 O -0.36 -6.04 10.55 -51.43 -0.54 -6.58 16 3 C 0.47 9.50 7.26 71.23 0.52 10.01 16 4 O -0.54 -14.14 15.56 21.98 0.34 -13.80 16 5 C -0.08 -1.37 3.39 -10.23 -0.03 -1.40 16 6 H 0.14 1.75 8.14 -2.39 -0.02 1.73 16 7 C -0.10 -1.61 6.25 31.67 0.20 -1.41 16 8 C -0.13 -3.12 6.59 31.32 0.21 -2.91 16 9 C 0.14 3.71 3.23 45.72 0.15 3.86 16 10 H 0.08 2.34 7.59 -2.38 -0.02 2.32 16 11 N -0.72 -24.30 4.88 -439.09 -2.14 -26.44 16 12 C 0.52 23.87 7.14 87.66 0.63 24.50 16 13 O -0.58 -30.68 15.13 -3.04 -0.05 -30.73 16 14 C 0.02 1.13 2.64 -12.29 -0.03 1.09 16 15 H 0.04 2.00 8.14 -2.38 -0.02 1.98 16 16 C -0.12 -5.44 8.86 71.98 0.64 -4.80 16 17 C -0.53 -30.91 8.37 25.60 0.21 -30.69 16 18 H 0.05 3.10 6.75 -2.91 -0.02 3.08 16 19 C 0.02 1.03 5.30 84.65 0.45 1.47 16 20 N -0.91 -51.89 11.32 21.45 0.24 -51.65 16 21 Si 0.96 45.27 29.54 68.60 2.03 47.29 16 22 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 23 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 24 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 25 C -0.11 -2.25 5.57 31.69 0.18 -2.07 16 26 H 0.06 0.75 8.13 -2.39 -0.02 0.73 16 27 H 0.13 0.71 8.14 -2.38 -0.02 0.69 16 28 H 0.06 0.76 8.13 -2.39 -0.02 0.74 16 29 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.07 1.22 8.05 -2.38 -0.02 1.20 16 31 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.06 1.66 7.92 -2.39 -0.02 1.64 16 33 H 0.41 11.94 7.76 -92.71 -0.72 11.22 16 34 H 0.05 1.87 7.55 -2.39 -0.02 1.85 16 35 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.07 3.54 6.07 -2.39 -0.01 3.53 16 37 H 0.26 14.26 8.31 -92.70 -0.77 13.49 16 38 H 0.08 1.85 7.14 -2.39 -0.02 1.83 16 39 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -71.48 323.85 4.52 -66.96 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: 0.33 Total: 15.78 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: 4.30 Total: -0.84 kcal Atomic # 7 Polarization: -76.19 SS G_CDS: -1.90 Total: -78.09 kcal Atomic # 8 Polarization: -50.86 SS G_CDS: -0.25 Total: -51.10 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.29 kcal Total: -71.48 4.52 -66.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350975810.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.985 kcal (2) G-P(sol) polarization free energy of solvation -71.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds