Wall clock time and date at job start Mon Mar 30 2020 01:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34224 * 116.99641 * 2 1 4 4 O 1.20828 * 120.00126 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99958 * 180.02562 * 3 2 1 6 6 H 1.08994 * 110.67593 * 61.77502 * 5 3 2 7 7 C 1.54895 * 110.75331 * 298.54280 * 5 3 2 8 8 C 1.54263 * 104.19421 * 203.55796 * 7 5 3 9 9 C 1.53877 * 106.60052 * 23.61224 * 8 7 5 10 10 H 1.09001 * 110.03126 * 240.66406 * 9 8 7 11 11 N 1.46498 * 110.03631 * 119.28181 * 9 8 7 12 12 C 1.34777 * 119.99828 * 86.81360 * 11 9 8 13 13 O 1.21283 * 120.00222 * 0.28168 * 12 11 9 14 14 C 1.50703 * 120.00290 * 180.27728 * 12 11 9 15 15 H 1.09002 * 109.46946 * 59.99717 * 14 12 11 16 16 C 1.53007 * 109.47063 * 300.00464 * 14 12 11 17 17 C 1.50701 * 109.47355 * 180.02562 * 14 12 11 18 18 H 1.08000 * 119.99624 * 0.02562 * 17 14 12 19 19 C 1.37872 * 119.99634 * 179.97438 * 17 14 12 20 20 N 1.31515 * 120.00230 * 0.02562 * 19 17 14 21 21 Si 1.86803 * 119.99703 * 180.02562 * 19 17 14 22 22 H 1.48500 * 109.46973 * 90.00366 * 21 19 17 23 23 H 1.48505 * 109.47151 * 210.00011 * 21 19 17 24 24 H 1.48500 * 109.47089 * 330.00544 * 21 19 17 25 25 C 1.54268 * 106.63867 * 359.97352 * 9 8 7 26 26 H 1.09003 * 109.47270 * 299.99895 * 1 2 3 27 27 H 1.09002 * 109.47306 * 60.00422 * 1 2 3 28 28 H 1.09004 * 109.47093 * 180.02562 * 1 2 3 29 29 H 1.08995 * 110.48693 * 84.88012 * 7 5 3 30 30 H 1.09000 * 110.59455 * 322.29110 * 7 5 3 31 31 H 1.08993 * 110.03510 * 264.32407 * 8 7 5 32 32 H 1.09001 * 110.03163 * 142.89174 * 8 7 5 33 33 H 0.97001 * 120.00384 * 267.09806 * 11 9 8 34 34 H 1.09001 * 109.46852 * 59.99630 * 16 14 12 35 35 H 1.08993 * 109.46731 * 179.97438 * 16 14 12 36 36 H 1.09003 * 109.46582 * 300.00001 * 16 14 12 37 37 H 0.97000 * 119.99613 * 180.02562 * 20 19 17 38 38 H 1.09002 * 110.48805 * 95.09377 * 25 9 8 39 39 H 1.09002 * 110.48586 * 217.73515 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9755 0.8137 -0.8993 7 6 4.1511 0.6123 1.2715 8 6 5.5344 1.2738 1.4406 9 6 5.4657 2.6285 0.7142 10 1 6.2037 2.6603 -0.0874 11 7 5.7075 3.7192 1.6619 12 6 6.9683 4.1168 1.9242 13 8 7.9024 3.5752 1.3718 14 6 7.2176 5.2345 2.9038 15 1 6.8204 4.9571 3.8803 16 6 6.5231 6.5067 2.4136 17 6 8.6997 5.4831 3.0159 18 1 9.3919 4.8912 2.4355 19 6 9.1718 6.4669 3.8587 20 7 8.3288 7.1879 4.5651 21 14 11.0090 6.7755 3.9971 22 1 11.4179 7.7882 2.9909 23 1 11.3257 7.2752 5.3592 24 1 11.7436 5.5087 3.7512 25 6 4.0434 2.7437 0.1278 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 4.2575 -0.4628 1.1270 30 1 3.5208 0.8196 2.1362 31 1 6.3052 0.6478 0.9912 32 1 5.7477 1.4279 2.4984 33 1 4.9606 4.1524 2.1038 34 1 5.4511 6.3271 2.3322 35 1 6.7031 7.3150 3.1223 36 1 6.9202 6.7841 1.4371 37 1 8.6610 7.8803 5.1577 38 1 3.3946 3.2974 0.8065 39 1 4.0718 3.2233 -0.8506 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350975811.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:14 Heat of formation + Delta-G solvation = -140.877442 kcal Electronic energy + Delta-G solvation = -20692.787026 eV Core-core repulsion = 17406.829869 eV Total energy + Delta-G solvation = -3285.957157 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.86780 -39.20773 -37.49129 -36.50772 -33.69253 -33.15700 -30.52026 -29.33376 -28.43597 -27.12292 -25.09678 -22.99801 -22.49595 -20.48620 -20.09120 -19.23290 -17.88830 -16.99409 -16.69776 -16.17147 -15.98933 -15.65004 -15.02784 -14.43786 -14.01399 -13.73850 -13.70658 -13.23130 -12.92407 -12.53846 -12.52634 -12.18856 -11.88695 -11.62665 -11.40214 -11.34700 -11.10155 -11.02685 -10.97420 -10.69452 -10.67019 -10.59492 -10.47874 -10.21944 -9.93018 -8.94041 -8.58180 -8.40902 -8.28852 -6.00315 -4.03340 1.97740 2.44902 3.35573 3.41194 3.48002 3.74600 3.91139 4.24233 4.39219 4.49721 4.69511 4.80752 4.88118 4.91715 5.21996 5.24137 5.29150 5.32795 5.37410 5.42471 5.52871 5.73503 5.93328 6.05123 6.10160 6.12541 6.27867 6.43431 6.66398 6.87012 6.96951 7.17155 7.51211 7.51700 7.79411 8.02437 8.19010 8.49151 9.05824 9.28630 9.62254 11.07313 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.046155 B = 0.003503 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.503588 B = 7992.343643 C = 8299.189414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.469 3.531 4 O -0.505 6.505 5 C -0.088 4.088 6 H 0.118 0.882 7 C -0.108 4.108 8 C -0.135 4.135 9 C 0.141 3.859 10 H 0.091 0.909 11 N -0.741 5.741 12 C 0.520 3.480 13 O -0.546 6.546 14 C 0.028 3.972 15 H 0.052 0.948 16 C -0.132 4.132 17 C -0.500 4.500 18 H 0.074 0.926 19 C 0.057 3.943 20 N -0.897 5.897 21 Si 0.899 3.101 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.273 1.273 25 C -0.112 4.112 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.100 0.900 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.396 0.604 34 H 0.012 0.988 35 H 0.092 0.908 36 H 0.031 0.969 37 H 0.260 0.740 38 H 0.086 0.914 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.835 -13.296 -7.654 21.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.275 6.275 3 C 0.312 3.688 4 O -0.392 6.392 5 C -0.107 4.107 6 H 0.136 0.864 7 C -0.146 4.146 8 C -0.174 4.174 9 C 0.036 3.964 10 H 0.109 0.891 11 N -0.395 5.395 12 C 0.310 3.690 13 O -0.422 6.422 14 C 0.007 3.993 15 H 0.069 0.931 16 C -0.191 4.191 17 C -0.538 4.538 18 H 0.092 0.908 19 C -0.143 4.143 20 N -0.537 5.537 21 Si 0.727 3.273 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.198 1.198 25 C -0.150 4.150 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.119 0.881 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.230 0.770 34 H 0.031 0.969 35 H 0.111 0.889 36 H 0.050 0.950 37 H 0.070 0.930 38 H 0.104 0.896 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -14.351 -13.237 -7.919 21.068 hybrid contribution 0.223 0.468 0.290 0.594 sum -14.128 -12.768 -7.629 20.514 Atomic orbital electron populations 1.23268 0.76495 1.03632 1.02577 1.86522 1.23302 1.33585 1.84092 1.23733 0.91914 0.81229 0.71914 1.90680 1.67141 1.36372 1.45013 1.22057 0.86537 0.99653 1.02467 0.86439 1.22335 0.96857 1.00147 0.95243 1.22640 0.95975 0.96423 1.02398 1.21398 0.95671 0.86922 0.92446 0.89136 1.46445 1.09335 1.37466 1.46247 1.21973 0.80858 0.83911 0.82265 1.90522 1.42827 1.57131 1.51704 1.18876 0.98534 0.89046 0.92811 0.93065 1.21743 0.94765 1.01409 1.01133 1.21155 0.90489 1.17787 1.24385 0.90794 1.24954 0.98131 0.95819 0.95401 1.69876 1.33829 1.22460 1.27521 0.86461 0.85223 0.78538 0.77038 1.20701 1.21333 1.19754 1.22595 0.96005 0.93550 1.02882 0.91869 0.91942 0.88134 0.90274 0.91106 0.90782 0.90413 0.77002 0.96889 0.88901 0.95028 0.93005 0.89586 0.90113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.55 101.05 1.07 1.31 16 2 O -0.36 -3.50 10.55 -39.24 -0.41 -3.92 16 3 C 0.47 5.24 7.26 36.01 0.26 5.50 16 4 O -0.51 -7.02 15.56 -18.75 -0.29 -7.31 16 5 C -0.09 -0.86 3.39 -89.73 -0.30 -1.16 16 6 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 7 C -0.11 -1.05 6.25 -25.07 -0.16 -1.21 16 8 C -0.14 -1.69 6.59 -25.61 -0.17 -1.86 16 9 C 0.14 1.99 3.23 -66.81 -0.22 1.78 16 10 H 0.09 1.42 7.59 -51.93 -0.39 1.02 16 11 N -0.74 -12.65 4.88 -52.72 -0.26 -12.90 16 12 C 0.52 11.71 7.14 -10.98 -0.08 11.63 16 13 O -0.55 -14.01 15.13 5.55 0.08 -13.93 16 14 C 0.03 0.71 2.64 -92.92 -0.25 0.46 16 15 H 0.05 1.32 8.14 -51.93 -0.42 0.90 16 16 C -0.13 -3.07 8.86 37.16 0.33 -2.74 16 17 C -0.50 -14.25 8.37 -34.44 -0.29 -14.54 16 18 H 0.07 2.22 6.75 -52.49 -0.35 1.87 16 19 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 20 N -0.90 -25.38 11.32 55.43 0.63 -24.76 16 21 Si 0.90 21.95 29.54 -169.99 -5.02 16.92 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 24 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 25 C -0.11 -1.30 5.57 -25.03 -0.14 -1.44 16 26 H 0.06 0.46 8.13 -51.93 -0.42 0.03 16 27 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 28 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.70 8.05 -51.93 -0.42 0.28 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.08 1.10 7.92 -51.93 -0.41 0.69 16 33 H 0.40 6.02 7.77 -40.82 -0.32 5.71 16 34 H 0.01 0.24 7.56 -51.93 -0.39 -0.15 16 35 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 36 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 38 H 0.09 1.06 7.14 -51.93 -0.37 0.69 16 39 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 323.87 15.07 4.88 4.88 Total: -1.00 -32.77 323.87 -6.34 -39.11 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -5.91 Total: 2.65 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -0.03 Total: -0.75 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: 0.37 Total: -37.66 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -0.62 Total: -25.16 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.77 -6.34 -39.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350975811.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.765 kcal (2) G-P(sol) polarization free energy of solvation -32.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds