Wall clock time and date at job start Mon Mar 30 2020 01:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34224 * 116.99641 * 2 1 4 4 O 1.20828 * 120.00126 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99958 * 180.02562 * 3 2 1 6 6 H 1.08994 * 110.67593 * 61.77502 * 5 3 2 7 7 C 1.54895 * 110.75331 * 298.54280 * 5 3 2 8 8 C 1.54263 * 104.19421 * 203.55796 * 7 5 3 9 9 C 1.53877 * 106.60052 * 23.61224 * 8 7 5 10 10 H 1.09001 * 110.03126 * 240.66406 * 9 8 7 11 11 N 1.46498 * 110.03631 * 119.28181 * 9 8 7 12 12 C 1.34777 * 119.99828 * 86.81360 * 11 9 8 13 13 O 1.21283 * 120.00222 * 0.28168 * 12 11 9 14 14 C 1.50703 * 120.00290 * 180.27728 * 12 11 9 15 15 H 1.09002 * 109.46946 * 59.99717 * 14 12 11 16 16 C 1.53007 * 109.47063 * 300.00464 * 14 12 11 17 17 C 1.50701 * 109.47355 * 180.02562 * 14 12 11 18 18 H 1.08000 * 119.99624 * 0.02562 * 17 14 12 19 19 C 1.37872 * 119.99634 * 179.97438 * 17 14 12 20 20 N 1.31515 * 120.00230 * 0.02562 * 19 17 14 21 21 Si 1.86803 * 119.99703 * 180.02562 * 19 17 14 22 22 H 1.48500 * 109.46973 * 90.00366 * 21 19 17 23 23 H 1.48505 * 109.47151 * 210.00011 * 21 19 17 24 24 H 1.48500 * 109.47089 * 330.00544 * 21 19 17 25 25 C 1.54268 * 106.63867 * 359.97352 * 9 8 7 26 26 H 1.09003 * 109.47270 * 299.99895 * 1 2 3 27 27 H 1.09002 * 109.47306 * 60.00422 * 1 2 3 28 28 H 1.09004 * 109.47093 * 180.02562 * 1 2 3 29 29 H 1.08995 * 110.48693 * 84.88012 * 7 5 3 30 30 H 1.09000 * 110.59455 * 322.29110 * 7 5 3 31 31 H 1.08993 * 110.03510 * 264.32407 * 8 7 5 32 32 H 1.09001 * 110.03163 * 142.89174 * 8 7 5 33 33 H 0.97001 * 120.00384 * 267.09806 * 11 9 8 34 34 H 1.09001 * 109.46852 * 59.99630 * 16 14 12 35 35 H 1.08993 * 109.46731 * 179.97438 * 16 14 12 36 36 H 1.09003 * 109.46582 * 300.00001 * 16 14 12 37 37 H 0.97000 * 119.99613 * 180.02562 * 20 19 17 38 38 H 1.09002 * 110.48805 * 95.09377 * 25 9 8 39 39 H 1.09002 * 110.48586 * 217.73515 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9755 0.8137 -0.8993 7 6 4.1511 0.6123 1.2715 8 6 5.5344 1.2738 1.4406 9 6 5.4657 2.6285 0.7142 10 1 6.2037 2.6603 -0.0874 11 7 5.7075 3.7192 1.6619 12 6 6.9683 4.1168 1.9242 13 8 7.9024 3.5752 1.3718 14 6 7.2176 5.2345 2.9038 15 1 6.8204 4.9571 3.8803 16 6 6.5231 6.5067 2.4136 17 6 8.6997 5.4831 3.0159 18 1 9.3919 4.8912 2.4355 19 6 9.1718 6.4669 3.8587 20 7 8.3288 7.1879 4.5651 21 14 11.0090 6.7755 3.9971 22 1 11.4179 7.7882 2.9909 23 1 11.3257 7.2752 5.3592 24 1 11.7436 5.5087 3.7512 25 6 4.0434 2.7437 0.1278 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 4.2575 -0.4628 1.1270 30 1 3.5208 0.8196 2.1362 31 1 6.3052 0.6478 0.9912 32 1 5.7477 1.4279 2.4984 33 1 4.9606 4.1524 2.1038 34 1 5.4511 6.3271 2.3322 35 1 6.7031 7.3150 3.1223 36 1 6.9202 6.7841 1.4371 37 1 8.6610 7.8803 5.1577 38 1 3.3946 3.2974 0.8065 39 1 4.0718 3.2233 -0.8506 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350975811.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:14 Heat of formation + Delta-G solvation = -162.002632 kcal Electronic energy + Delta-G solvation = -20693.703083 eV Core-core repulsion = 17406.829869 eV Total energy + Delta-G solvation = -3286.873214 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.74253 -40.70137 -38.70074 -37.41334 -35.74413 -34.62170 -32.44463 -30.29435 -29.39817 -27.98867 -27.17675 -24.55817 -23.61755 -21.63984 -21.18960 -20.71100 -18.80311 -18.27925 -17.81914 -17.74945 -17.39747 -16.90609 -16.38747 -16.15255 -15.50413 -15.00379 -14.68135 -14.47497 -14.36092 -14.06140 -13.48747 -13.27137 -13.22822 -12.96327 -12.90145 -12.62553 -12.59170 -12.57538 -12.19770 -12.18429 -12.01198 -11.94308 -11.77122 -11.62978 -11.37079 -11.02664 -10.58669 -10.26517 -9.90580 -8.14143 -6.24580 1.13530 1.41273 1.41808 1.53780 1.70359 1.96993 2.38007 2.57055 3.15424 3.33369 3.48250 3.86544 4.07450 4.26089 4.32077 4.34300 4.35506 4.40303 4.43335 4.51123 4.57498 4.73759 4.76022 4.87276 4.95710 5.02719 5.05975 5.15218 5.22048 5.26154 5.37412 5.51074 5.70773 5.78686 5.96069 6.22956 6.69890 6.76128 6.88555 7.41432 7.58597 8.91727 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.046155 B = 0.003503 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.503588 B = 7992.343643 C = 8299.189414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.359 6.359 3 C 0.474 3.526 4 O -0.537 6.537 5 C -0.081 4.081 6 H 0.144 0.856 7 C -0.096 4.096 8 C -0.133 4.133 9 C 0.136 3.864 10 H 0.076 0.924 11 N -0.722 5.722 12 C 0.523 3.477 13 O -0.584 6.584 14 C 0.022 3.978 15 H 0.040 0.960 16 C -0.120 4.120 17 C -0.528 4.528 18 H 0.050 0.950 19 C 0.018 3.982 20 N -0.913 5.913 21 Si 0.956 3.044 22 H -0.275 1.275 23 H -0.275 1.275 24 H -0.277 1.277 25 C -0.105 4.105 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.132 0.868 29 H 0.103 0.897 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.407 0.593 34 H 0.050 0.950 35 H 0.069 0.931 36 H 0.022 0.978 37 H 0.264 0.736 38 H 0.080 0.920 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.950 -14.443 -8.180 23.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.275 6.275 3 C 0.318 3.682 4 O -0.427 6.427 5 C -0.100 4.100 6 H 0.161 0.839 7 C -0.134 4.134 8 C -0.171 4.171 9 C 0.032 3.968 10 H 0.094 0.906 11 N -0.375 5.375 12 C 0.312 3.688 13 O -0.463 6.463 14 C 0.001 3.999 15 H 0.057 0.943 16 C -0.178 4.178 17 C -0.566 4.566 18 H 0.068 0.932 19 C -0.181 4.181 20 N -0.552 5.552 21 Si 0.781 3.219 22 H -0.200 1.200 23 H -0.200 1.200 24 H -0.202 1.202 25 C -0.143 4.143 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.150 0.850 29 H 0.121 0.879 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.243 0.757 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.042 0.958 37 H 0.073 0.927 38 H 0.098 0.902 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.525 -14.403 -8.443 22.799 hybrid contribution 0.484 0.780 0.455 1.025 sum -15.042 -13.623 -7.988 21.809 Atomic orbital electron populations 1.23549 0.74979 1.05690 1.02429 1.86510 1.24790 1.32621 1.83544 1.23856 0.92198 0.81160 0.70986 1.90675 1.67885 1.37459 1.46690 1.22043 0.86023 0.98292 1.03641 0.83881 1.22264 0.94686 1.01249 0.95172 1.22563 0.98067 0.95631 1.00884 1.21620 0.96988 0.86652 0.91581 0.90599 1.46199 1.07733 1.37611 1.45913 1.21455 0.82123 0.83386 0.81793 1.90498 1.44390 1.58284 1.53168 1.18813 0.96976 0.90923 0.93164 0.94268 1.21560 0.96910 0.99647 0.99689 1.21309 0.92208 1.18215 1.24878 0.93209 1.25616 1.02065 0.95454 0.94966 1.69958 1.35254 1.22491 1.27514 0.85591 0.80515 0.78168 0.77588 1.20017 1.20041 1.20235 1.22489 0.93856 0.95164 1.02790 0.92213 0.91971 0.85027 0.87877 0.91158 0.90417 0.92249 0.75718 0.93142 0.91189 0.95844 0.92652 0.90166 0.89426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.55 113.37 1.20 1.51 16 2 O -0.36 -6.04 10.55 -51.36 -0.54 -6.58 16 3 C 0.47 9.49 7.26 71.24 0.52 10.01 16 4 O -0.54 -14.13 15.56 21.96 0.34 -13.78 16 5 C -0.08 -1.37 3.39 -10.22 -0.03 -1.40 16 6 H 0.14 1.75 8.14 -2.39 -0.02 1.73 16 7 C -0.10 -1.61 6.25 31.67 0.20 -1.41 16 8 C -0.13 -3.14 6.59 31.32 0.21 -2.93 16 9 C 0.14 3.71 3.23 45.72 0.15 3.86 16 10 H 0.08 2.34 7.59 -2.39 -0.02 2.32 16 11 N -0.72 -24.30 4.88 -439.09 -2.14 -26.45 16 12 C 0.52 23.87 7.14 87.66 0.63 24.50 16 13 O -0.58 -30.70 15.13 -3.04 -0.05 -30.75 16 14 C 0.02 1.14 2.64 -12.28 -0.03 1.10 16 15 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 16 C -0.12 -5.56 8.86 71.98 0.64 -4.92 16 17 C -0.53 -30.82 8.37 25.60 0.21 -30.61 16 18 H 0.05 3.10 6.75 -2.91 -0.02 3.08 16 19 C 0.02 1.01 5.30 84.65 0.45 1.46 16 20 N -0.91 -51.85 11.32 21.45 0.24 -51.61 16 21 Si 0.96 45.27 29.54 68.60 2.03 47.30 16 22 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 23 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 24 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 25 C -0.10 -2.24 5.57 31.70 0.18 -2.06 16 26 H 0.06 0.76 8.13 -2.39 -0.02 0.74 16 27 H 0.06 0.75 8.13 -2.39 -0.02 0.73 16 28 H 0.13 0.71 8.14 -2.38 -0.02 0.69 16 29 H 0.10 1.30 8.14 -2.39 -0.02 1.29 16 30 H 0.07 1.22 8.05 -2.39 -0.02 1.20 16 31 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.06 1.64 7.92 -2.39 -0.02 1.62 16 33 H 0.41 11.94 7.77 -92.71 -0.72 11.22 16 34 H 0.05 1.90 7.56 -2.39 -0.02 1.88 16 35 H 0.07 3.59 6.07 -2.39 -0.01 3.57 16 36 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 38 H 0.08 1.85 7.14 -2.39 -0.02 1.83 16 39 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -71.53 323.87 4.51 -67.01 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: 0.33 Total: 15.75 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: 4.30 Total: -0.89 kcal Atomic # 7 Polarization: -76.15 SS G_CDS: -1.90 Total: -78.05 kcal Atomic # 8 Polarization: -50.87 SS G_CDS: -0.25 Total: -51.11 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -71.53 4.51 -67.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350975811.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.989 kcal (2) G-P(sol) polarization free energy of solvation -71.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds