Wall clock time and date at job start Mon Mar 30 2020 01:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50700 * 109.47313 * 120.00230 * 2 1 3 5 5 H 1.07997 * 120.00357 * 119.99585 * 4 2 1 6 6 C 1.37876 * 119.99656 * 299.99978 * 4 2 1 7 7 N 1.31514 * 119.99993 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99954 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.46976 * 89.99956 * 8 6 4 10 10 H 1.48499 * 109.47427 * 210.00201 * 8 6 4 11 11 H 1.48503 * 109.47229 * 330.00587 * 8 6 4 12 12 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 13 13 O 1.21283 * 120.00262 * 240.00295 * 12 2 1 14 14 N 1.34777 * 119.99928 * 59.72201 * 12 2 1 15 15 C 1.46499 * 120.00199 * 180.27479 * 14 12 2 16 16 H 1.09006 * 110.01147 * 34.92525 * 15 14 12 17 17 C 1.53933 * 110.03082 * 273.55099 * 15 14 12 18 18 C 1.54394 * 106.63000 * 240.71183 * 17 15 14 19 19 C 1.54105 * 104.15209 * 22.85840 * 18 17 15 20 20 C 1.54113 * 103.65473 * 322.96026 * 19 18 17 21 21 O 1.42890 * 110.70622 * 204.24081 * 19 18 17 22 22 C 1.44994 * 104.54964 * 213.60934 * 21 19 18 23 23 C 1.54979 * 101.85282 * 35.22813 * 22 21 19 24 24 O 1.42511 * 110.91477 * 82.02398 * 19 18 17 25 25 H 1.08996 * 109.46783 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 27 27 H 1.09001 * 109.46739 * 59.99706 * 1 2 3 28 28 H 0.97009 * 119.99880 * 180.02562 * 7 6 4 29 29 H 0.97000 * 120.00317 * 0.28382 * 14 12 2 30 30 H 1.09000 * 110.02014 * 0.02562 * 17 15 14 31 31 H 1.09002 * 110.02823 * 121.41246 * 17 15 14 32 32 H 1.08999 * 110.49868 * 141.52848 * 18 17 15 33 33 H 1.09006 * 110.49721 * 264.19253 * 18 17 15 34 34 H 1.09001 * 110.49436 * 278.37835 * 20 19 18 35 35 H 1.08998 * 110.50148 * 155.71052 * 20 19 18 36 36 H 1.08997 * 110.95562 * 277.08471 * 22 21 19 37 37 H 1.09003 * 110.97773 * 153.38089 * 22 21 19 38 38 H 1.08999 * 110.68786 * 206.51742 * 23 22 21 39 39 H 1.08997 * 110.83664 * 83.39483 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6033 8 14 2.3214 -1.1204 4.0079 9 1 3.6298 -0.5459 4.4123 10 1 1.3431 -0.9494 5.1120 11 1 2.4860 -2.5662 3.7118 12 6 2.0324 -0.7104 -1.2305 13 8 2.7296 -1.6965 -1.1193 14 7 1.7022 -0.2532 -2.4546 15 6 2.1855 -0.9472 -3.6507 16 1 2.2273 -2.0210 -3.4677 17 6 3.5808 -0.4237 -4.0365 18 6 3.4519 0.1747 -5.4539 19 6 1.9533 0.5082 -5.5872 20 6 1.2557 -0.6495 -4.8469 21 8 1.5624 0.5371 -6.9613 22 6 0.5399 1.5629 -7.0277 23 6 1.0529 2.5915 -5.9881 24 8 1.6537 1.7585 -4.9725 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 0.7087 1.1612 3.4844 29 1 1.1446 0.5355 -2.5436 30 1 3.8980 0.3463 -3.3332 31 1 4.2990 -1.2436 -4.0412 32 1 4.0535 1.0793 -5.5424 33 1 3.7484 -0.5569 -6.2055 34 1 1.1749 -1.5228 -5.4942 35 1 0.2708 -0.3404 -4.4969 36 1 -0.4316 1.1645 -6.7352 37 1 0.4942 2.0045 -8.0232 38 1 0.2246 3.1665 -5.5743 39 1 1.7959 3.2539 -6.4322 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001435708710.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:00 Heat of formation + Delta-G solvation = -133.578511 kcal Electronic energy + Delta-G solvation = -21500.681015 eV Core-core repulsion = 18215.040364 eV Total energy + Delta-G solvation = -3285.640652 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.00677 -38.84225 -36.50368 -35.21510 -33.64692 -32.65534 -30.41969 -29.62971 -28.47912 -26.09206 -25.06408 -23.52935 -22.62003 -20.75393 -20.25791 -19.28506 -17.42622 -16.91973 -16.31712 -15.85648 -15.76287 -15.33140 -15.06463 -14.38640 -14.08050 -13.93122 -13.66579 -13.00298 -12.98214 -12.55531 -12.41730 -12.34035 -12.17251 -11.74247 -11.47875 -11.35080 -11.13197 -10.94972 -10.74811 -10.64960 -10.63442 -10.39371 -10.16748 -9.89963 -9.59433 -8.90562 -8.52374 -8.31695 -8.24504 -5.97286 -3.99932 3.23124 3.37488 3.42833 3.50199 3.71208 3.82237 4.06331 4.29369 4.46235 4.49283 4.53171 4.68467 4.87221 5.06703 5.29238 5.31184 5.35910 5.38117 5.45791 5.55481 5.59723 5.64725 5.79417 5.90057 5.99715 6.17443 6.34897 6.50861 6.69414 6.90530 7.00616 7.00790 7.26920 7.56020 7.82548 8.06533 8.24604 8.57147 9.09288 9.36250 9.65465 11.10370 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.035983 B = 0.004385 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.968242 B = 6383.297417 C = 6785.697669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.028 3.972 3 H 0.051 0.949 4 C -0.498 4.498 5 H 0.074 0.926 6 C 0.057 3.943 7 N -0.898 5.898 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.273 1.273 12 C 0.519 3.481 13 O -0.549 6.549 14 N -0.737 5.737 15 C 0.147 3.853 16 H 0.089 0.911 17 C -0.130 4.130 18 C -0.123 4.123 19 C 0.250 3.750 20 C -0.150 4.150 21 O -0.368 6.368 22 C 0.014 3.986 23 C 0.018 3.982 24 O -0.360 6.360 25 H 0.030 0.970 26 H 0.092 0.908 27 H 0.011 0.989 28 H 0.260 0.740 29 H 0.398 0.602 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.106 0.894 38 H 0.101 0.899 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.830 3.787 -19.754 20.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.007 3.993 3 H 0.069 0.931 4 C -0.537 4.537 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.198 1.198 12 C 0.309 3.691 13 O -0.425 6.425 14 N -0.391 5.391 15 C 0.041 3.959 16 H 0.107 0.893 17 C -0.169 4.169 18 C -0.161 4.161 19 C 0.173 3.827 20 C -0.188 4.188 21 O -0.288 6.288 22 C -0.062 4.062 23 C -0.059 4.059 24 O -0.281 6.281 25 H 0.049 0.951 26 H 0.111 0.889 27 H 0.030 0.970 28 H 0.069 0.931 29 H 0.232 0.768 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.113 0.887 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.124 0.876 38 H 0.119 0.881 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.269 3.073 -19.457 19.739 hybrid contribution -0.152 0.164 0.648 0.686 sum -1.421 3.236 -18.809 19.138 Atomic orbital electron populations 1.21724 0.96655 0.99682 1.00839 1.18864 0.94086 0.96841 0.89483 0.93090 1.21161 1.30734 1.12718 0.89044 0.90818 1.24952 0.95179 0.95112 0.99079 1.69881 1.37228 1.23219 1.23399 0.86465 0.78409 0.80268 0.82131 1.20717 1.21356 1.19777 1.21950 0.78381 0.84165 0.84581 1.90515 1.38152 1.27003 1.86841 1.46406 1.55211 1.32336 1.05097 1.21242 0.91940 0.98077 0.84610 0.89294 1.22593 0.97867 1.01171 0.95232 1.22545 0.93303 1.01842 0.98438 1.23803 0.95022 0.85532 0.78356 1.23149 0.99821 0.98311 0.97567 1.89172 1.55631 1.57851 1.26133 1.24419 0.92636 0.87909 1.01283 1.24267 0.98333 0.94338 0.88917 1.88908 1.81158 1.24189 1.33861 0.95097 0.88937 0.96971 0.93062 0.76773 0.90433 0.90853 0.90468 0.89750 0.88688 0.89880 0.90504 0.87565 0.88110 0.90635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 8.86 37.16 0.33 -2.76 16 2 C 0.03 0.73 2.64 -92.92 -0.25 0.48 16 3 H 0.05 1.36 8.14 -51.93 -0.42 0.94 16 4 C -0.50 -14.44 8.37 -34.44 -0.29 -14.73 16 5 H 0.07 2.25 6.75 -52.49 -0.35 1.90 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -25.63 11.32 55.43 0.63 -25.01 16 8 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 9 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 12 C 0.52 12.18 7.14 -10.98 -0.08 12.10 16 13 O -0.55 -14.57 15.14 5.55 0.08 -14.49 16 14 N -0.74 -13.48 4.83 -52.62 -0.25 -13.74 16 15 C 0.15 2.30 3.23 -66.71 -0.22 2.08 16 16 H 0.09 1.51 7.61 -51.93 -0.39 1.12 16 17 C -0.13 -1.88 6.60 -25.51 -0.17 -2.05 16 18 C -0.12 -1.49 6.27 -25.42 -0.16 -1.65 16 19 C 0.25 3.05 1.21 -25.57 -0.03 3.02 16 20 C -0.15 -1.88 5.88 -25.41 -0.15 -2.03 16 21 O -0.37 -4.16 11.11 -59.02 -0.66 -4.82 16 22 C 0.01 0.11 7.96 38.20 0.30 0.42 16 23 C 0.02 0.15 8.08 38.20 0.31 0.46 16 24 O -0.36 -4.55 10.99 -59.02 -0.65 -5.20 16 25 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 27 H 0.01 0.23 7.55 -51.93 -0.39 -0.16 16 28 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.40 6.73 7.96 -40.82 -0.32 6.40 16 30 H 0.08 1.27 7.92 -51.93 -0.41 0.86 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.08 1.03 7.96 -51.93 -0.41 0.62 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 317.35 15.07 4.78 4.78 Total: -1.00 -32.57 317.35 -7.54 -40.11 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -5.97 Total: 4.34 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -0.49 Total: -3.14 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.37 Total: -38.74 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -1.22 Total: -24.50 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.57 -7.54 -40.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001435708710.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.470 kcal (2) G-P(sol) polarization free energy of solvation -32.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds