Wall clock time and date at job start Mon Mar 30 2020 01:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50700 * 109.47313 * 120.00230 * 2 1 3 5 5 H 1.07997 * 120.00357 * 119.99585 * 4 2 1 6 6 C 1.37876 * 119.99656 * 299.99978 * 4 2 1 7 7 N 1.31514 * 119.99993 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99954 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.46976 * 89.99956 * 8 6 4 10 10 H 1.48499 * 109.47427 * 210.00201 * 8 6 4 11 11 H 1.48503 * 109.47229 * 330.00587 * 8 6 4 12 12 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 13 13 O 1.21283 * 120.00262 * 240.00295 * 12 2 1 14 14 N 1.34777 * 119.99928 * 59.72201 * 12 2 1 15 15 C 1.46499 * 120.00199 * 180.27479 * 14 12 2 16 16 H 1.09006 * 110.01147 * 34.92525 * 15 14 12 17 17 C 1.53933 * 110.03082 * 273.55099 * 15 14 12 18 18 C 1.54394 * 106.63000 * 240.71183 * 17 15 14 19 19 C 1.54105 * 104.15209 * 22.85840 * 18 17 15 20 20 C 1.54113 * 103.65473 * 322.96026 * 19 18 17 21 21 O 1.42890 * 110.70622 * 204.24081 * 19 18 17 22 22 C 1.44994 * 104.54964 * 213.60934 * 21 19 18 23 23 C 1.54979 * 101.85282 * 35.22813 * 22 21 19 24 24 O 1.42511 * 110.91477 * 82.02398 * 19 18 17 25 25 H 1.08996 * 109.46783 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 27 27 H 1.09001 * 109.46739 * 59.99706 * 1 2 3 28 28 H 0.97009 * 119.99880 * 180.02562 * 7 6 4 29 29 H 0.97000 * 120.00317 * 0.28382 * 14 12 2 30 30 H 1.09000 * 110.02014 * 0.02562 * 17 15 14 31 31 H 1.09002 * 110.02823 * 121.41246 * 17 15 14 32 32 H 1.08999 * 110.49868 * 141.52848 * 18 17 15 33 33 H 1.09006 * 110.49721 * 264.19253 * 18 17 15 34 34 H 1.09001 * 110.49436 * 278.37835 * 20 19 18 35 35 H 1.08998 * 110.50148 * 155.71052 * 20 19 18 36 36 H 1.08997 * 110.95562 * 277.08471 * 22 21 19 37 37 H 1.09003 * 110.97773 * 153.38089 * 22 21 19 38 38 H 1.08999 * 110.68786 * 206.51742 * 23 22 21 39 39 H 1.08997 * 110.83664 * 83.39483 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6033 8 14 2.3214 -1.1204 4.0079 9 1 3.6298 -0.5459 4.4123 10 1 1.3431 -0.9494 5.1120 11 1 2.4860 -2.5662 3.7118 12 6 2.0324 -0.7104 -1.2305 13 8 2.7296 -1.6965 -1.1193 14 7 1.7022 -0.2532 -2.4546 15 6 2.1855 -0.9472 -3.6507 16 1 2.2273 -2.0210 -3.4677 17 6 3.5808 -0.4237 -4.0365 18 6 3.4519 0.1747 -5.4539 19 6 1.9533 0.5082 -5.5872 20 6 1.2557 -0.6495 -4.8469 21 8 1.5624 0.5371 -6.9613 22 6 0.5399 1.5629 -7.0277 23 6 1.0529 2.5915 -5.9881 24 8 1.6537 1.7585 -4.9725 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 0.7087 1.1612 3.4844 29 1 1.1446 0.5355 -2.5436 30 1 3.8980 0.3463 -3.3332 31 1 4.2990 -1.2436 -4.0412 32 1 4.0535 1.0793 -5.5424 33 1 3.7484 -0.5569 -6.2055 34 1 1.1749 -1.5228 -5.4942 35 1 0.2708 -0.3404 -4.4969 36 1 -0.4316 1.1645 -6.7352 37 1 0.4942 2.0045 -8.0232 38 1 0.2246 3.1665 -5.5743 39 1 1.7959 3.2539 -6.4322 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001435708710.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:59 Heat of formation + Delta-G solvation = -156.294347 kcal Electronic energy + Delta-G solvation = -21501.666048 eV Core-core repulsion = 18215.040364 eV Total energy + Delta-G solvation = -3286.625684 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.91143 -40.50798 -37.80349 -36.04645 -35.74001 -34.19829 -32.33527 -30.49351 -29.59623 -27.30260 -27.09384 -24.48922 -24.17668 -21.71213 -21.62024 -20.99142 -18.39438 -18.26251 -17.76575 -17.56808 -17.19721 -16.36181 -16.32872 -16.10260 -15.47193 -15.14522 -14.76892 -14.61782 -14.44301 -13.82985 -13.51793 -13.41930 -13.24313 -13.18618 -13.01326 -12.94526 -12.63926 -12.58969 -12.28297 -12.19006 -12.15071 -11.98785 -11.87212 -11.10180 -11.03060 -10.58622 -10.50580 -10.26536 -9.91359 -8.13984 -6.24430 1.41217 1.41361 1.53840 1.96157 2.35411 2.47669 2.58554 2.92592 3.15324 3.41243 3.45450 3.74018 4.07412 4.11850 4.19001 4.28315 4.36388 4.39668 4.51635 4.56071 4.67546 4.69662 4.75660 4.82668 4.90006 4.94726 4.96135 4.99435 5.02624 5.18614 5.18935 5.50722 5.69965 5.77967 5.95882 6.19957 6.22963 6.76871 6.89154 7.41290 7.58611 8.91975 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.035983 B = 0.004385 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.968242 B = 6383.297417 C = 6785.697669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.023 3.977 3 H 0.037 0.963 4 C -0.528 4.528 5 H 0.048 0.952 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 0.957 3.043 9 H -0.275 1.275 10 H -0.274 1.274 11 H -0.278 1.278 12 C 0.522 3.478 13 O -0.587 6.587 14 N -0.716 5.716 15 C 0.141 3.859 16 H 0.073 0.927 17 C -0.127 4.127 18 C -0.117 4.117 19 C 0.253 3.747 20 C -0.140 4.140 21 O -0.378 6.378 22 C 0.012 3.988 23 C 0.010 3.990 24 O -0.386 6.386 25 H 0.023 0.977 26 H 0.070 0.930 27 H 0.049 0.951 28 H 0.265 0.735 29 H 0.407 0.593 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.112 0.888 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.134 0.866 38 H 0.118 0.882 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.632 4.388 -21.269 21.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.002 3.998 3 H 0.054 0.946 4 C -0.566 4.566 5 H 0.067 0.933 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.782 3.218 9 H -0.200 1.200 10 H -0.199 1.199 11 H -0.203 1.203 12 C 0.311 3.689 13 O -0.467 6.467 14 N -0.368 5.368 15 C 0.036 3.964 16 H 0.092 0.908 17 C -0.166 4.166 18 C -0.154 4.154 19 C 0.175 3.825 20 C -0.179 4.179 21 O -0.298 6.298 22 C -0.064 4.064 23 C -0.065 4.065 24 O -0.308 6.308 25 H 0.042 0.958 26 H 0.089 0.911 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.243 0.757 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.118 0.882 34 H 0.130 0.870 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.151 0.849 38 H 0.136 0.864 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.098 3.716 -21.019 21.448 hybrid contribution 0.074 0.048 1.051 1.055 sum -2.024 3.764 -19.968 20.420 Atomic orbital electron populations 1.21532 0.95056 0.99376 1.01571 1.18805 0.95383 0.95761 0.89859 0.94555 1.21290 1.31525 1.12696 0.91128 0.93341 1.25614 0.95195 0.95780 1.01454 1.69960 1.37223 1.23668 1.24264 0.85580 0.78365 0.78774 0.79063 1.20044 1.19856 1.20336 1.21514 0.78183 0.83617 0.85619 1.90491 1.40000 1.28666 1.87535 1.46156 1.54056 1.32098 1.04529 1.21457 0.93620 0.96912 0.84457 0.90831 1.22503 0.97050 1.00584 0.96501 1.22500 0.93911 1.02205 0.96826 1.23640 0.94551 0.85367 0.78922 1.23101 0.99095 0.99454 0.96214 1.89156 1.56669 1.58882 1.25121 1.24677 0.92116 0.86982 1.02630 1.24539 0.99088 0.94346 0.88568 1.88885 1.81617 1.24746 1.35504 0.95773 0.91088 0.93230 0.92624 0.75684 0.92758 0.90744 0.90121 0.88197 0.86983 0.89434 0.89592 0.84866 0.86398 0.89762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.51 8.86 71.98 0.64 -4.87 16 2 C 0.02 1.21 2.64 -12.29 -0.03 1.17 16 3 H 0.04 1.99 8.14 -2.38 -0.02 1.97 16 4 C -0.53 -31.40 8.37 25.60 0.21 -31.19 16 5 H 0.05 3.08 6.75 -2.91 -0.02 3.06 16 6 C 0.02 1.06 5.30 84.65 0.45 1.51 16 7 N -0.91 -52.15 11.32 21.45 0.24 -51.90 16 8 Si 0.96 45.74 29.54 68.60 2.03 47.77 16 9 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 10 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 11 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 12 C 0.52 24.92 7.14 87.66 0.63 25.54 16 13 O -0.59 -32.17 15.14 -3.04 -0.05 -32.21 16 14 N -0.72 -26.04 4.83 -438.78 -2.12 -28.16 16 15 C 0.14 4.31 3.23 45.78 0.15 4.46 16 16 H 0.07 2.51 7.61 -2.38 -0.02 2.49 16 17 C -0.13 -3.67 6.60 31.38 0.21 -3.46 16 18 C -0.12 -2.63 6.27 31.44 0.20 -2.44 16 19 C 0.25 5.61 1.21 31.34 0.04 5.65 16 20 C -0.14 -3.24 5.88 31.45 0.18 -3.05 16 21 O -0.38 -7.44 11.11 -126.23 -1.40 -8.85 16 22 C 0.01 0.15 7.96 72.66 0.58 0.72 16 23 C 0.01 0.15 8.08 72.66 0.59 0.74 16 24 O -0.39 -8.98 10.99 -126.23 -1.39 -10.36 16 25 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.07 3.66 6.07 -2.39 -0.01 3.65 16 27 H 0.05 1.89 7.55 -2.39 -0.02 1.88 16 28 H 0.26 14.28 8.31 -92.70 -0.77 13.51 16 29 H 0.41 13.33 7.96 -92.71 -0.74 12.60 16 30 H 0.05 1.81 7.92 -2.39 -0.02 1.79 16 31 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.10 1.94 8.14 -2.38 -0.02 1.92 16 34 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.09 1.95 7.96 -2.39 -0.02 1.94 16 36 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -70.85 317.35 1.46 -69.40 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: 0.31 Total: 19.54 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: 3.84 Total: -5.22 kcal Atomic # 7 Polarization: -78.18 SS G_CDS: -1.88 Total: -80.06 kcal Atomic # 8 Polarization: -48.58 SS G_CDS: -2.84 Total: -51.42 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -70.85 1.46 -69.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001435708710.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.899 kcal (2) G-P(sol) polarization free energy of solvation -70.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds