Wall clock time and date at job start Mon Mar 30 2020 01:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.47187 * 2 1 4 4 O 1.21285 * 120.00000 * 0.02562 * 3 2 1 5 5 N 1.34774 * 120.00108 * 179.97438 * 3 2 1 6 6 C 1.46504 * 120.00176 * 180.02562 * 5 3 2 7 7 H 1.08993 * 109.46981 * 34.99904 * 6 5 3 8 8 C 1.53000 * 109.46761 * 274.99969 * 6 5 3 9 9 C 1.50702 * 109.47189 * 154.99799 * 6 5 3 10 10 O 1.20833 * 119.99953 * 0.02562 * 9 6 5 11 11 O 1.34222 * 119.99939 * 179.97438 * 9 6 5 12 12 C 1.45196 * 117.00173 * 179.97438 * 11 9 6 13 13 H 1.09001 * 109.47418 * 330.00339 * 12 11 9 14 14 C 1.50698 * 109.47500 * 210.00442 * 12 11 9 15 15 H 1.08001 * 119.99689 * 274.97586 * 14 12 11 16 16 C 1.37875 * 120.00112 * 94.97412 * 14 12 11 17 17 N 1.31519 * 120.00155 * 184.91177 * 16 14 12 18 18 Si 1.86796 * 119.99939 * 4.91119 * 16 14 12 19 19 H 1.48504 * 109.47293 * 84.83388 * 18 16 14 20 20 H 1.48507 * 109.47131 * 204.83100 * 18 16 14 21 21 H 1.48499 * 109.47169 * 324.83119 * 18 16 14 22 22 C 1.53003 * 109.47154 * 90.00219 * 12 11 9 23 23 C 1.52999 * 117.49926 * 225.91078 * 22 12 11 24 24 C 1.53003 * 117.49916 * 294.57342 * 22 12 11 25 25 H 1.09002 * 109.47186 * 59.99899 * 1 2 3 26 26 H 1.08998 * 109.47423 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47370 * 300.00006 * 1 2 3 28 28 H 1.08995 * 109.47071 * 239.99574 * 2 1 3 29 29 H 1.09002 * 109.46845 * 119.99677 * 2 1 3 30 30 H 0.97003 * 120.00240 * 359.97438 * 5 3 2 31 31 H 1.08995 * 109.47610 * 59.99650 * 8 6 5 32 32 H 1.09002 * 109.47007 * 180.02562 * 8 6 5 33 33 H 1.09003 * 109.46893 * 300.00037 * 8 6 5 34 34 H 0.96990 * 120.00230 * 180.02562 * 17 16 14 35 35 H 1.09000 * 115.54670 * 80.24097 * 22 12 11 36 36 H 1.09001 * 117.49969 * 214.99814 * 23 22 12 37 37 H 1.08995 * 117.50063 * 0.02706 * 23 22 12 38 38 H 1.08995 * 117.49410 * 359.97416 * 24 22 12 39 39 H 1.08997 * 117.49620 * 144.99440 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6671 0.0005 6 6 3.8457 3.0483 0.0011 7 1 3.1730 3.6713 0.5904 8 6 3.8977 3.5714 -1.4358 9 6 5.2270 3.0925 0.6021 10 8 5.7501 2.0746 0.9897 11 8 5.8767 4.2625 0.7058 12 6 7.2032 4.2299 1.2953 13 1 7.2610 3.4135 2.0152 14 6 7.4742 5.5368 1.9951 15 1 7.8561 6.3790 1.4372 16 6 7.2346 5.6572 3.3475 17 7 7.3786 6.8227 3.9397 18 14 6.7054 4.1650 4.3388 19 1 7.9061 3.3998 4.7607 20 1 5.9545 4.6098 5.5404 21 1 5.8348 3.2992 3.5035 22 6 8.2449 4.0148 0.1955 23 6 9.3379 2.9752 0.4513 24 6 8.2190 2.6792 -0.5506 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.9878 0.9298 0.0013 31 1 2.8987 3.5394 -1.8705 32 1 4.2615 4.5989 -1.4354 33 1 4.5704 2.9483 -2.0251 34 1 7.2104 6.9073 4.8911 35 1 8.5187 4.9036 -0.3729 36 1 10.3309 3.1800 0.0511 37 1 9.3146 2.4442 1.4029 38 1 7.4601 1.9538 -0.2575 39 1 8.4758 2.6894 -1.6098 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520418889.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:51 Heat of formation + Delta-G solvation = -111.938010 kcal Electronic energy + Delta-G solvation = -21310.002578 eV Core-core repulsion = 18025.300329 eV Total energy + Delta-G solvation = -3284.702249 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.30783 -39.31670 -36.89589 -35.24848 -34.81691 -33.00313 -32.85820 -30.63356 -28.59467 -25.27126 -24.02428 -22.99209 -21.78716 -20.60610 -20.21987 -19.40666 -17.86181 -17.16740 -16.65748 -16.22026 -15.74464 -15.60262 -15.03233 -14.63075 -14.07267 -13.83482 -13.64070 -13.38054 -12.87855 -12.59656 -12.37337 -12.22376 -11.96281 -11.89634 -11.64906 -11.44066 -11.40130 -11.29375 -11.02087 -10.89084 -10.33333 -9.90900 -9.85519 -9.81502 -9.51679 -9.40958 -9.16622 -9.07584 -8.83088 -6.44122 -4.50807 2.58547 2.81734 2.89766 3.14652 3.22119 3.29734 3.64695 4.16243 4.46899 4.63319 4.89940 4.93237 4.95568 5.19301 5.24286 5.36626 5.40014 5.54474 5.61152 5.62283 5.72431 5.77333 5.85687 5.92505 6.05722 6.12395 6.14908 6.23679 6.39619 6.43777 6.57794 6.68599 6.90433 7.27988 7.47896 7.52271 8.15128 8.18882 8.60550 8.66608 9.16681 10.65363 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.019570 B = 0.005773 C = 0.005110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.383250 B = 4849.120157 C = 5478.520384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.143 4.143 3 C 0.513 3.487 4 O -0.542 6.542 5 N -0.716 5.716 6 C 0.141 3.859 7 H 0.119 0.881 8 C -0.152 4.152 9 C 0.449 3.551 10 O -0.529 6.529 11 O -0.346 6.346 12 C 0.204 3.796 13 H 0.052 0.948 14 C -0.504 4.504 15 H 0.086 0.914 16 C 0.088 3.912 17 N -0.864 5.864 18 Si 0.873 3.127 19 H -0.268 1.268 20 H -0.281 1.281 21 H -0.261 1.261 22 C -0.136 4.136 23 C -0.170 4.170 24 C -0.204 4.204 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.409 0.591 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.060 0.940 34 H 0.273 0.727 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.804 -12.511 -8.672 16.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.183 4.183 3 C 0.300 3.700 4 O -0.419 6.419 5 N -0.370 5.370 6 C 0.035 3.965 7 H 0.137 0.863 8 C -0.210 4.210 9 C 0.293 3.707 10 O -0.421 6.421 11 O -0.261 6.261 12 C 0.153 3.847 13 H 0.070 0.930 14 C -0.540 4.540 15 H 0.104 0.896 16 C -0.120 4.120 17 N -0.500 5.500 18 Si 0.699 3.301 19 H -0.193 1.193 20 H -0.207 1.207 21 H -0.186 1.186 22 C -0.154 4.154 23 C -0.207 4.207 24 C -0.240 4.240 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.245 0.755 31 H 0.088 0.912 32 H 0.103 0.897 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.121 0.879 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.120 0.880 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.154 -11.970 -8.362 16.260 hybrid contribution 0.264 -1.072 0.733 1.325 sum -6.890 -13.042 -7.629 16.606 Atomic orbital electron populations 1.21526 0.92968 1.01466 1.03422 1.21619 0.98597 0.93579 1.04507 1.20791 0.81675 0.92038 0.75470 1.90705 1.55216 1.46487 1.49455 1.45912 1.07563 1.08191 1.75344 1.20489 0.92321 0.84784 0.98930 0.86349 1.22034 1.02861 1.02700 0.93436 1.23420 0.87700 0.83943 0.75682 1.90505 1.68643 1.35900 1.47067 1.87048 1.34548 1.31618 1.72866 1.20673 0.75171 0.98962 0.89877 0.92993 1.20908 1.42593 0.97627 0.92872 0.89586 1.25171 0.92868 0.95998 0.97988 1.69888 1.45153 1.23209 1.11710 0.86889 0.79999 0.83191 0.80062 1.19347 1.20659 1.18564 1.22616 0.99930 0.92242 1.00640 1.22792 0.93784 1.03680 1.00439 1.23190 1.02791 1.01422 0.96644 0.91958 0.92150 0.91940 0.88853 0.88792 0.75498 0.91208 0.89705 0.92128 0.91703 0.87938 0.89324 0.89279 0.88007 0.90014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.20 37.16 0.34 -0.89 16 2 C -0.14 -1.31 6.42 -27.88 -0.18 -1.49 16 3 C 0.51 6.94 7.79 -10.99 -0.09 6.85 16 4 O -0.54 -9.19 15.65 5.55 0.09 -9.10 16 5 N -0.72 -9.94 4.95 -54.93 -0.27 -10.21 16 6 C 0.14 2.30 3.09 -69.08 -0.21 2.09 16 7 H 0.12 2.06 7.58 -51.93 -0.39 1.67 16 8 C -0.15 -2.11 9.42 37.16 0.35 -1.76 16 9 C 0.45 8.98 6.78 36.01 0.24 9.22 16 10 O -0.53 -11.09 12.78 -18.76 -0.24 -11.33 16 11 O -0.35 -7.89 9.76 -39.24 -0.38 -8.27 16 12 C 0.20 4.90 1.87 -27.88 -0.05 4.85 16 13 H 0.05 1.31 4.11 -51.93 -0.21 1.10 16 14 C -0.50 -13.83 9.24 -34.44 -0.32 -14.15 16 15 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 16 C 0.09 2.44 5.47 -17.82 -0.10 2.35 16 17 N -0.86 -25.06 13.96 55.43 0.77 -24.28 16 18 Si 0.87 21.46 26.99 -169.99 -4.59 16.87 16 19 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 21 H -0.26 -6.56 6.82 56.52 0.39 -6.18 16 22 C -0.14 -2.80 5.33 -90.62 -0.48 -3.28 16 23 C -0.17 -3.07 10.18 -26.69 -0.27 -3.34 16 24 C -0.20 -3.60 9.82 -26.69 -0.26 -3.86 16 25 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 28 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.41 5.12 7.79 -40.82 -0.32 4.80 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.08 1.20 8.11 -51.93 -0.42 0.78 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.10 2.08 8.14 -51.93 -0.42 1.65 16 36 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 37 H 0.09 1.66 8.08 -51.93 -0.42 1.24 16 38 H 0.10 1.91 5.58 -51.93 -0.29 1.62 16 39 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 328.70 15.07 4.95 4.95 Total: -1.00 -31.24 328.70 -6.55 -37.79 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -5.85 Total: 7.00 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -1.03 Total: -3.42 kcal Atomic # 7 Polarization: -35.00 SS G_CDS: 0.50 Total: -34.50 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -0.54 Total: -28.70 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.59 Total: 16.87 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.24 -6.55 -37.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520418889.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.149 kcal (2) G-P(sol) polarization free energy of solvation -31.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds