Wall clock time and date at job start Mon Mar 30 2020 01:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.47187 * 2 1 4 4 O 1.21285 * 120.00000 * 0.02562 * 3 2 1 5 5 N 1.34774 * 120.00108 * 179.97438 * 3 2 1 6 6 C 1.46504 * 120.00176 * 180.02562 * 5 3 2 7 7 H 1.08993 * 109.46981 * 34.99904 * 6 5 3 8 8 C 1.53000 * 109.46761 * 274.99969 * 6 5 3 9 9 C 1.50702 * 109.47189 * 154.99799 * 6 5 3 10 10 O 1.20833 * 119.99953 * 0.02562 * 9 6 5 11 11 O 1.34222 * 119.99939 * 179.97438 * 9 6 5 12 12 C 1.45196 * 117.00173 * 179.97438 * 11 9 6 13 13 H 1.09001 * 109.47418 * 330.00339 * 12 11 9 14 14 C 1.50698 * 109.47500 * 210.00442 * 12 11 9 15 15 H 1.08001 * 119.99689 * 274.97586 * 14 12 11 16 16 C 1.37875 * 120.00112 * 94.97412 * 14 12 11 17 17 N 1.31519 * 120.00155 * 184.91177 * 16 14 12 18 18 Si 1.86796 * 119.99939 * 4.91119 * 16 14 12 19 19 H 1.48504 * 109.47293 * 84.83388 * 18 16 14 20 20 H 1.48507 * 109.47131 * 204.83100 * 18 16 14 21 21 H 1.48499 * 109.47169 * 324.83119 * 18 16 14 22 22 C 1.53003 * 109.47154 * 90.00219 * 12 11 9 23 23 C 1.52999 * 117.49926 * 225.91078 * 22 12 11 24 24 C 1.53003 * 117.49916 * 294.57342 * 22 12 11 25 25 H 1.09002 * 109.47186 * 59.99899 * 1 2 3 26 26 H 1.08998 * 109.47423 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47370 * 300.00006 * 1 2 3 28 28 H 1.08995 * 109.47071 * 239.99574 * 2 1 3 29 29 H 1.09002 * 109.46845 * 119.99677 * 2 1 3 30 30 H 0.97003 * 120.00240 * 359.97438 * 5 3 2 31 31 H 1.08995 * 109.47610 * 59.99650 * 8 6 5 32 32 H 1.09002 * 109.47007 * 180.02562 * 8 6 5 33 33 H 1.09003 * 109.46893 * 300.00037 * 8 6 5 34 34 H 0.96990 * 120.00230 * 180.02562 * 17 16 14 35 35 H 1.09000 * 115.54670 * 80.24097 * 22 12 11 36 36 H 1.09001 * 117.49969 * 214.99814 * 23 22 12 37 37 H 1.08995 * 117.50063 * 0.02706 * 23 22 12 38 38 H 1.08995 * 117.49410 * 359.97416 * 24 22 12 39 39 H 1.08997 * 117.49620 * 144.99440 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6671 0.0005 6 6 3.8457 3.0483 0.0011 7 1 3.1730 3.6713 0.5904 8 6 3.8977 3.5714 -1.4358 9 6 5.2270 3.0925 0.6021 10 8 5.7501 2.0746 0.9897 11 8 5.8767 4.2625 0.7058 12 6 7.2032 4.2299 1.2953 13 1 7.2610 3.4135 2.0152 14 6 7.4742 5.5368 1.9951 15 1 7.8561 6.3790 1.4372 16 6 7.2346 5.6572 3.3475 17 7 7.3786 6.8227 3.9397 18 14 6.7054 4.1650 4.3388 19 1 7.9061 3.3998 4.7607 20 1 5.9545 4.6098 5.5404 21 1 5.8348 3.2992 3.5035 22 6 8.2449 4.0148 0.1955 23 6 9.3379 2.9752 0.4513 24 6 8.2190 2.6792 -0.5506 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.9878 0.9298 0.0013 31 1 2.8987 3.5394 -1.8705 32 1 4.2615 4.5989 -1.4354 33 1 4.5704 2.9483 -2.0251 34 1 7.2104 6.9073 4.8911 35 1 8.5187 4.9036 -0.3729 36 1 10.3309 3.1800 0.0511 37 1 9.3146 2.4442 1.4029 38 1 7.4601 1.9538 -0.2575 39 1 8.4758 2.6894 -1.6098 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001520418889.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:50 Heat of formation + Delta-G solvation = -131.966452 kcal Electronic energy + Delta-G solvation = -21310.871076 eV Core-core repulsion = 18025.300329 eV Total energy + Delta-G solvation = -3285.570748 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.79228 -40.64070 -38.46394 -36.84447 -36.17348 -34.95895 -33.84702 -31.82726 -30.46379 -26.43745 -25.43322 -24.55138 -23.20417 -21.99179 -21.39785 -21.11961 -19.49513 -18.81387 -18.19422 -17.65708 -17.27854 -16.76144 -16.51889 -16.08978 -15.56869 -15.32047 -14.93752 -14.75344 -14.44915 -13.94790 -13.69745 -13.46663 -13.39533 -13.21039 -13.08429 -12.95770 -12.69676 -12.63382 -12.30867 -12.13834 -12.02198 -11.81713 -11.43486 -11.28637 -11.04026 -10.99653 -10.96246 -10.75308 -10.33766 -8.57173 -6.68153 1.15124 1.18932 1.21528 1.30907 1.47345 1.65775 2.11510 2.27331 2.90260 3.02263 3.64963 3.78769 3.94081 3.98036 4.01855 4.08266 4.21930 4.22582 4.28166 4.39140 4.63220 4.71515 4.75879 4.79158 4.82165 5.00173 5.00378 5.07020 5.10854 5.20347 5.25825 5.31077 5.31681 5.38663 5.75108 6.10322 6.42578 6.46864 6.87631 7.02735 7.14915 8.56926 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.019570 B = 0.005773 C = 0.005110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.383250 B = 4849.120157 C = 5478.520384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.135 4.135 3 C 0.509 3.491 4 O -0.581 6.581 5 N -0.711 5.711 6 C 0.148 3.852 7 H 0.104 0.896 8 C -0.143 4.143 9 C 0.448 3.552 10 O -0.536 6.536 11 O -0.361 6.361 12 C 0.211 3.789 13 H 0.041 0.959 14 C -0.518 4.518 15 H 0.053 0.947 16 C 0.043 3.957 17 N -0.908 5.908 18 Si 0.929 3.071 19 H -0.254 1.254 20 H -0.272 1.272 21 H -0.271 1.271 22 C -0.168 4.168 23 C -0.161 4.161 24 C -0.178 4.178 25 H 0.051 0.949 26 H 0.088 0.912 27 H 0.043 0.957 28 H 0.124 0.876 29 H 0.113 0.887 30 H 0.417 0.583 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.277 0.723 35 H 0.100 0.900 36 H 0.117 0.883 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.046 -15.499 -9.792 19.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.174 4.174 3 C 0.299 3.701 4 O -0.460 6.460 5 N -0.366 5.366 6 C 0.041 3.959 7 H 0.122 0.878 8 C -0.201 4.201 9 C 0.292 3.708 10 O -0.428 6.428 11 O -0.277 6.277 12 C 0.159 3.841 13 H 0.059 0.941 14 C -0.554 4.554 15 H 0.072 0.928 16 C -0.161 4.161 17 N -0.545 5.545 18 Si 0.752 3.248 19 H -0.178 1.178 20 H -0.197 1.197 21 H -0.196 1.196 22 C -0.186 4.186 23 C -0.198 4.198 24 C -0.214 4.214 25 H 0.070 0.930 26 H 0.107 0.893 27 H 0.062 0.938 28 H 0.142 0.858 29 H 0.131 0.869 30 H 0.256 0.744 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.118 0.882 36 H 0.135 0.865 37 H 0.100 0.900 38 H 0.111 0.889 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.386 -14.988 -9.487 19.214 hybrid contribution 0.300 -0.163 0.995 1.052 sum -7.086 -15.151 -8.492 18.758 Atomic orbital electron populations 1.21545 0.93005 1.02827 1.02002 1.21711 0.98397 0.90510 1.06829 1.21667 0.80870 0.93580 0.74022 1.90694 1.56007 1.48154 1.51184 1.45922 1.08133 1.07180 1.75365 1.20378 0.89289 0.86454 0.99804 0.87780 1.21985 1.03789 1.02504 0.91865 1.23986 0.88706 0.82791 0.75355 1.90492 1.69164 1.35842 1.47324 1.86915 1.34298 1.33330 1.73136 1.20407 0.76266 0.96425 0.90984 0.94095 1.21059 1.42906 0.98193 0.93263 0.92842 1.25847 0.93050 0.98257 0.98956 1.69976 1.47275 1.24962 1.12291 0.86023 0.79947 0.80057 0.78746 1.17787 1.19712 1.19624 1.22482 1.00979 0.93866 1.01316 1.22936 0.94832 1.01539 1.00539 1.23206 1.01880 0.98186 0.98175 0.93011 0.89331 0.93814 0.85765 0.86930 0.74446 0.90271 0.90320 0.90584 0.91304 0.88226 0.86520 0.90025 0.88882 0.86895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.20 71.98 0.66 -1.49 16 2 C -0.14 -2.04 6.42 29.85 0.19 -1.85 16 3 C 0.51 12.81 7.79 87.66 0.68 13.49 16 4 O -0.58 -19.29 15.65 -3.05 -0.05 -19.34 16 5 N -0.71 -18.33 4.95 -446.09 -2.21 -20.54 16 6 C 0.15 4.67 3.09 44.24 0.14 4.81 16 7 H 0.10 3.64 7.58 -2.39 -0.02 3.62 16 8 C -0.14 -3.76 9.42 71.98 0.68 -3.08 16 9 C 0.45 17.50 6.78 71.24 0.48 17.99 16 10 O -0.54 -21.68 12.78 21.94 0.28 -21.40 16 11 O -0.36 -16.56 9.76 -51.34 -0.50 -17.06 16 12 C 0.21 10.18 1.87 29.85 0.06 10.24 16 13 H 0.04 2.06 4.11 -2.39 -0.01 2.05 16 14 C -0.52 -29.34 9.24 25.60 0.24 -29.10 16 15 H 0.05 3.28 8.06 -2.91 -0.02 3.26 16 16 C 0.04 2.43 5.47 84.65 0.46 2.90 16 17 N -0.91 -54.21 13.96 21.45 0.30 -53.91 16 18 Si 0.93 44.73 26.99 68.60 1.85 46.58 16 19 H -0.25 -11.51 7.11 99.48 0.71 -10.81 16 20 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 21 H -0.27 -13.36 6.82 99.48 0.68 -12.68 16 22 C -0.17 -6.79 5.33 -10.79 -0.06 -6.85 16 23 C -0.16 -5.47 10.18 30.62 0.31 -5.16 16 24 C -0.18 -5.80 9.82 30.62 0.30 -5.50 16 25 H 0.05 0.92 8.10 -2.39 -0.02 0.90 16 26 H 0.09 0.90 8.14 -2.39 -0.02 0.89 16 27 H 0.04 0.85 8.10 -2.38 -0.02 0.83 16 28 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.11 1.35 8.14 -2.39 -0.02 1.34 16 30 H 0.42 9.33 7.79 -92.71 -0.72 8.61 16 31 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.08 2.16 8.11 -2.39 -0.02 2.14 16 33 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.28 15.32 8.31 -92.72 -0.77 14.55 16 35 H 0.10 4.04 8.14 -2.39 -0.02 4.02 16 36 H 0.12 3.28 8.14 -2.39 -0.02 3.26 16 37 H 0.08 2.89 8.08 -2.39 -0.02 2.87 16 38 H 0.09 3.23 5.58 -2.39 -0.01 3.22 16 39 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 Total: -1.00 -69.40 328.70 4.12 -65.28 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: 0.30 Total: 23.99 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: 4.15 Total: -3.61 kcal Atomic # 7 Polarization: -72.54 SS G_CDS: -1.91 Total: -74.45 kcal Atomic # 8 Polarization: -57.53 SS G_CDS: -0.27 Total: -57.80 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.85 Total: 46.58 kcal Total: -69.40 4.12 -65.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520418889.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.682 kcal (2) G-P(sol) polarization free energy of solvation -69.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds