Wall clock time and date at job start Mon Mar 30 2020 01:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.46668 * 2 1 4 4 O 1.21283 * 120.00202 * 0.02562 * 3 2 1 5 5 N 1.34784 * 119.99838 * 179.97438 * 3 2 1 6 6 C 1.46497 * 119.99893 * 180.02562 * 5 3 2 7 7 H 1.08998 * 109.46890 * 35.00367 * 6 5 3 8 8 C 1.52998 * 109.47205 * 275.00329 * 6 5 3 9 9 C 1.50703 * 109.46954 * 155.00035 * 6 5 3 10 10 O 1.20828 * 120.00115 * 0.02562 * 9 6 5 11 11 O 1.34225 * 120.00074 * 179.97438 * 9 6 5 12 12 C 1.45199 * 117.00128 * 180.02562 * 11 9 6 13 13 H 1.09002 * 109.47177 * 30.00118 * 12 11 9 14 14 C 1.50699 * 109.47289 * 150.00055 * 12 11 9 15 15 H 1.08000 * 119.99792 * 359.97438 * 14 12 11 16 16 C 1.37878 * 119.99902 * 179.97438 * 14 12 11 17 17 N 1.31515 * 120.00126 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 119.99745 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47256 * 90.00491 * 18 16 14 20 20 H 1.48506 * 109.46930 * 210.00332 * 18 16 14 21 21 H 1.48499 * 109.47104 * 330.00193 * 18 16 14 22 22 C 1.52997 * 109.47075 * 270.00075 * 12 11 9 23 23 C 1.53001 * 117.50135 * 128.74465 * 22 12 11 24 24 C 1.53000 * 117.49905 * 60.08475 * 22 12 11 25 25 H 1.09003 * 109.47396 * 59.99954 * 1 2 3 26 26 H 1.09000 * 109.47002 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47610 * 299.99726 * 1 2 3 28 28 H 1.09001 * 109.47222 * 240.00483 * 2 1 3 29 29 H 1.08999 * 109.47237 * 119.99566 * 2 1 3 30 30 H 0.96998 * 119.99874 * 0.02562 * 5 3 2 31 31 H 1.09000 * 109.46906 * 180.02562 * 8 6 5 32 32 H 1.09007 * 109.47001 * 299.99971 * 8 6 5 33 33 H 1.08995 * 109.47487 * 59.99816 * 8 6 5 34 34 H 0.96999 * 120.00073 * 179.97438 * 17 16 14 35 35 H 1.09006 * 115.55153 * 274.41844 * 22 12 11 36 36 H 1.09002 * 117.49734 * 0.02562 * 23 22 12 37 37 H 1.08994 * 117.49847 * 145.02044 * 23 22 12 38 38 H 1.09001 * 117.49936 * 214.98052 * 24 22 12 39 39 H 1.08999 * 117.50086 * 359.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 1.2440 2.3427 0.0005 5 7 3.3573 1.6672 0.0005 6 6 3.8456 3.0484 0.0011 7 1 3.1728 3.6713 0.5905 8 6 3.8974 3.5716 -1.4357 9 6 5.2269 3.0927 0.6020 10 8 5.7500 2.0748 0.9896 11 8 5.8765 4.2627 0.7058 12 6 7.2035 4.2300 1.2942 13 1 7.6714 3.2686 1.0823 14 6 8.0410 5.3365 0.7066 15 1 7.6183 5.9979 -0.0352 16 6 9.3468 5.5045 1.1161 17 7 9.8616 4.6988 2.0190 18 14 10.3846 6.8766 0.3882 19 1 10.2304 8.1035 1.2106 20 1 11.8114 6.4649 0.3762 21 1 9.9372 7.1521 -1.0007 22 6 7.0949 4.4216 2.8082 23 6 7.8074 3.4046 3.7020 24 6 6.2806 3.3919 3.5940 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.9877 0.9300 0.0005 31 1 4.2611 4.5992 -1.4353 32 1 4.5702 2.9487 -2.0252 33 1 2.8984 3.5396 -1.8704 34 1 10.7804 4.8167 2.3068 35 1 7.0621 5.4562 3.1501 36 1 8.3539 2.5991 3.2113 37 1 8.2431 3.7699 4.6319 38 1 5.7124 3.7490 4.4530 39 1 5.8218 2.5782 3.0323 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520418890.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:53 Heat of formation + Delta-G solvation = -110.640058 kcal Electronic energy + Delta-G solvation = -21122.949170 eV Core-core repulsion = 17838.303204 eV Total energy + Delta-G solvation = -3284.645966 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.33828 -39.32558 -36.68918 -35.09732 -34.85271 -33.00277 -32.69498 -30.62451 -27.89901 -25.27654 -24.07973 -22.97625 -21.30908 -20.58541 -20.21335 -19.26431 -17.82247 -16.86523 -16.54944 -16.16661 -15.62070 -15.36998 -15.01974 -14.60662 -14.05204 -13.78527 -13.64509 -13.06998 -12.86470 -12.57412 -12.29066 -12.14095 -11.90212 -11.71567 -11.41131 -11.37721 -11.29688 -11.08148 -10.99263 -10.47484 -10.32660 -9.94445 -9.86698 -9.78571 -9.45843 -9.19127 -9.05797 -8.71226 -8.47355 -6.19518 -4.27789 2.56475 2.78463 2.88757 3.22954 3.29290 3.32657 3.66104 4.30274 4.61738 4.90558 4.93100 4.96356 5.11663 5.16685 5.22241 5.38565 5.48408 5.62234 5.76762 5.79887 5.87846 5.90939 6.04815 6.10622 6.23402 6.30281 6.39651 6.50708 6.61256 6.95236 7.10118 7.19061 7.32860 7.45744 7.56047 7.79010 8.03491 8.16110 8.49840 8.81933 9.37025 10.87138 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.031093 B = 0.004467 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.293647 B = 6266.390709 C = 6839.518987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.143 4.143 3 C 0.515 3.485 4 O -0.543 6.543 5 N -0.716 5.716 6 C 0.148 3.852 7 H 0.120 0.880 8 C -0.155 4.155 9 C 0.454 3.546 10 O -0.517 6.517 11 O -0.343 6.343 12 C 0.249 3.751 13 H 0.049 0.951 14 C -0.529 4.529 15 H 0.070 0.930 16 C 0.069 3.931 17 N -0.873 5.873 18 Si 0.908 3.092 19 H -0.278 1.278 20 H -0.285 1.285 21 H -0.272 1.272 22 C -0.116 4.116 23 C -0.122 4.122 24 C -0.230 4.230 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.410 0.590 31 H 0.085 0.915 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.264 0.736 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.775 -7.568 -3.311 14.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.183 4.183 3 C 0.302 3.698 4 O -0.420 6.420 5 N -0.370 5.370 6 C 0.042 3.958 7 H 0.138 0.862 8 C -0.213 4.213 9 C 0.296 3.704 10 O -0.408 6.408 11 O -0.258 6.258 12 C 0.197 3.803 13 H 0.067 0.933 14 C -0.567 4.567 15 H 0.088 0.912 16 C -0.135 4.135 17 N -0.508 5.508 18 Si 0.735 3.265 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.196 1.196 22 C -0.135 4.135 23 C -0.159 4.159 24 C -0.267 4.267 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.247 0.753 31 H 0.103 0.897 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.940 -7.198 -3.068 14.276 hybrid contribution 1.215 0.303 -0.038 1.253 sum -10.726 -6.895 -3.106 13.124 Atomic orbital electron populations 1.21526 0.92977 1.01493 1.03385 1.21624 0.98571 0.93532 1.04608 1.20787 0.81594 0.92053 0.75369 1.90700 1.55230 1.46510 1.49550 1.45910 1.07630 1.08129 1.75348 1.20354 0.91645 0.84924 0.98924 0.86241 1.22070 1.02959 1.02840 0.93477 1.23217 0.87802 0.83363 0.75997 1.90565 1.67971 1.35703 1.46571 1.86485 1.34585 1.31835 1.72925 1.20277 0.73487 0.99435 0.87080 0.93309 1.20898 0.95801 1.15208 1.24759 0.91197 1.24879 0.97204 0.96578 0.94841 1.70044 1.14933 1.36656 1.29207 0.86345 0.79067 0.81530 0.79602 1.20418 1.21045 1.19647 1.22618 1.01792 0.94467 0.94634 1.22359 0.91461 1.01974 1.00113 1.23278 0.95593 1.04364 1.03442 0.91985 0.92132 0.91947 0.88801 0.88701 0.75344 0.89661 0.91939 0.91131 0.92584 0.89233 0.89330 0.90735 0.90988 0.88965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.20 37.16 0.34 -0.83 16 2 C -0.14 -1.25 6.42 -27.88 -0.18 -1.43 16 3 C 0.51 6.60 7.79 -10.98 -0.09 6.52 16 4 O -0.54 -8.76 15.64 5.55 0.09 -8.67 16 5 N -0.72 -9.49 4.95 -54.93 -0.27 -9.76 16 6 C 0.15 2.28 3.09 -69.08 -0.21 2.07 16 7 H 0.12 1.89 7.58 -51.93 -0.39 1.50 16 8 C -0.16 -2.13 9.42 37.16 0.35 -1.78 16 9 C 0.45 8.85 6.54 36.01 0.24 9.09 16 10 O -0.52 -10.89 12.89 -18.75 -0.24 -11.13 16 11 O -0.34 -7.76 9.75 -39.25 -0.38 -8.14 16 12 C 0.25 6.36 2.25 -27.88 -0.06 6.30 16 13 H 0.05 1.37 6.91 -51.93 -0.36 1.01 16 14 C -0.53 -14.30 8.88 -34.44 -0.31 -14.60 16 15 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 16 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 17 N -0.87 -23.70 11.43 55.43 0.63 -23.06 16 18 Si 0.91 20.56 29.54 -169.99 -5.02 15.54 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 22 C -0.12 -2.80 4.47 -90.62 -0.41 -3.21 16 23 C -0.12 -2.76 9.04 -26.69 -0.24 -3.00 16 24 C -0.23 -4.89 9.80 -26.69 -0.26 -5.15 16 25 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 28 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.41 5.01 7.79 -40.82 -0.32 4.69 16 31 H 0.08 1.19 8.11 -51.93 -0.42 0.77 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 35 H 0.09 2.23 8.11 -51.93 -0.42 1.81 16 36 H 0.09 2.13 8.05 -51.93 -0.42 1.72 16 37 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 38 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 39 H 0.09 2.01 5.37 -51.93 -0.28 1.73 16 LS Contribution 328.97 15.07 4.96 4.96 Total: -1.00 -29.97 328.97 -7.12 -37.08 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -5.96 Total: 7.47 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: -0.92 Total: -4.28 kcal Atomic # 7 Polarization: -33.18 SS G_CDS: 0.36 Total: -32.82 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: -0.54 Total: -27.95 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.97 -7.12 -37.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520418890.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.555 kcal (2) G-P(sol) polarization free energy of solvation -29.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds