Wall clock time and date at job start Mon Mar 30 2020 01:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.46668 * 2 1 4 4 O 1.21283 * 120.00202 * 0.02562 * 3 2 1 5 5 N 1.34784 * 119.99838 * 179.97438 * 3 2 1 6 6 C 1.46497 * 119.99893 * 180.02562 * 5 3 2 7 7 H 1.08998 * 109.46890 * 35.00367 * 6 5 3 8 8 C 1.52998 * 109.47205 * 275.00329 * 6 5 3 9 9 C 1.50703 * 109.46954 * 155.00035 * 6 5 3 10 10 O 1.20828 * 120.00115 * 0.02562 * 9 6 5 11 11 O 1.34225 * 120.00074 * 179.97438 * 9 6 5 12 12 C 1.45199 * 117.00128 * 180.02562 * 11 9 6 13 13 H 1.09002 * 109.47177 * 30.00118 * 12 11 9 14 14 C 1.50699 * 109.47289 * 150.00055 * 12 11 9 15 15 H 1.08000 * 119.99792 * 359.97438 * 14 12 11 16 16 C 1.37878 * 119.99902 * 179.97438 * 14 12 11 17 17 N 1.31515 * 120.00126 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 119.99745 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47256 * 90.00491 * 18 16 14 20 20 H 1.48506 * 109.46930 * 210.00332 * 18 16 14 21 21 H 1.48499 * 109.47104 * 330.00193 * 18 16 14 22 22 C 1.52997 * 109.47075 * 270.00075 * 12 11 9 23 23 C 1.53001 * 117.50135 * 128.74465 * 22 12 11 24 24 C 1.53000 * 117.49905 * 60.08475 * 22 12 11 25 25 H 1.09003 * 109.47396 * 59.99954 * 1 2 3 26 26 H 1.09000 * 109.47002 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47610 * 299.99726 * 1 2 3 28 28 H 1.09001 * 109.47222 * 240.00483 * 2 1 3 29 29 H 1.08999 * 109.47237 * 119.99566 * 2 1 3 30 30 H 0.96998 * 119.99874 * 0.02562 * 5 3 2 31 31 H 1.09000 * 109.46906 * 180.02562 * 8 6 5 32 32 H 1.09007 * 109.47001 * 299.99971 * 8 6 5 33 33 H 1.08995 * 109.47487 * 59.99816 * 8 6 5 34 34 H 0.96999 * 120.00073 * 179.97438 * 17 16 14 35 35 H 1.09006 * 115.55153 * 274.41844 * 22 12 11 36 36 H 1.09002 * 117.49734 * 0.02562 * 23 22 12 37 37 H 1.08994 * 117.49847 * 145.02044 * 23 22 12 38 38 H 1.09001 * 117.49936 * 214.98052 * 24 22 12 39 39 H 1.08999 * 117.50086 * 359.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 1.2440 2.3427 0.0005 5 7 3.3573 1.6672 0.0005 6 6 3.8456 3.0484 0.0011 7 1 3.1728 3.6713 0.5905 8 6 3.8974 3.5716 -1.4357 9 6 5.2269 3.0927 0.6020 10 8 5.7500 2.0748 0.9896 11 8 5.8765 4.2627 0.7058 12 6 7.2035 4.2300 1.2942 13 1 7.6714 3.2686 1.0823 14 6 8.0410 5.3365 0.7066 15 1 7.6183 5.9979 -0.0352 16 6 9.3468 5.5045 1.1161 17 7 9.8616 4.6988 2.0190 18 14 10.3846 6.8766 0.3882 19 1 10.2304 8.1035 1.2106 20 1 11.8114 6.4649 0.3762 21 1 9.9372 7.1521 -1.0007 22 6 7.0949 4.4216 2.8082 23 6 7.8074 3.4046 3.7020 24 6 6.2806 3.3919 3.5940 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.9877 0.9300 0.0005 31 1 4.2611 4.5992 -1.4353 32 1 4.5702 2.9487 -2.0252 33 1 2.8984 3.5396 -1.8704 34 1 10.7804 4.8167 2.3068 35 1 7.0621 5.4562 3.1501 36 1 8.3539 2.5991 3.2113 37 1 8.2431 3.7699 4.6319 38 1 5.7124 3.7490 4.4530 39 1 5.8218 2.5782 3.0323 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001520418890.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:52 Heat of formation + Delta-G solvation = -128.449929 kcal Electronic energy + Delta-G solvation = -21123.721464 eV Core-core repulsion = 17838.303204 eV Total energy + Delta-G solvation = -3285.418260 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.80361 -40.62270 -38.41249 -36.82006 -36.17136 -34.71736 -33.82088 -31.75995 -29.83201 -26.43505 -25.52264 -24.52913 -23.10345 -22.03848 -21.35741 -21.08274 -19.23306 -18.54125 -18.10489 -17.56971 -17.04494 -16.67133 -16.54614 -16.22290 -15.65864 -15.08873 -14.84196 -14.52459 -14.38251 -13.87073 -13.56070 -13.31802 -13.21185 -13.08059 -12.96636 -12.81114 -12.69590 -12.60634 -12.27581 -12.18387 -11.99670 -11.79332 -11.48182 -11.25482 -11.01129 -10.93407 -10.62496 -10.45834 -10.31095 -8.22002 -6.38517 1.18519 1.41705 1.44265 1.48561 1.56601 1.68430 2.29406 2.44990 3.05505 3.18017 3.65657 3.83151 3.95390 4.02408 4.09510 4.25051 4.28240 4.30636 4.42102 4.57682 4.66327 4.74534 4.77795 4.80258 5.02961 5.09498 5.10115 5.11549 5.22042 5.23284 5.36062 5.40746 5.46633 5.54706 5.81959 6.09543 6.43319 6.61957 6.88909 7.15547 7.30800 8.84097 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.031093 B = 0.004467 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.293647 B = 6266.390709 C = 6839.518987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.137 4.137 3 C 0.512 3.488 4 O -0.579 6.579 5 N -0.712 5.712 6 C 0.157 3.843 7 H 0.118 0.882 8 C -0.148 4.148 9 C 0.452 3.548 10 O -0.533 6.533 11 O -0.354 6.354 12 C 0.256 3.744 13 H 0.014 0.986 14 C -0.556 4.556 15 H 0.065 0.935 16 C 0.027 3.973 17 N -0.894 5.894 18 Si 0.973 3.027 19 H -0.272 1.272 20 H -0.279 1.279 21 H -0.268 1.268 22 C -0.135 4.135 23 C -0.119 4.119 24 C -0.201 4.201 25 H 0.050 0.950 26 H 0.087 0.913 27 H 0.045 0.955 28 H 0.121 0.879 29 H 0.114 0.886 30 H 0.416 0.584 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.267 0.733 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.417 -8.098 -3.524 15.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.176 4.176 3 C 0.302 3.698 4 O -0.458 6.458 5 N -0.367 5.367 6 C 0.051 3.949 7 H 0.135 0.865 8 C -0.206 4.206 9 C 0.295 3.705 10 O -0.424 6.424 11 O -0.269 6.269 12 C 0.203 3.797 13 H 0.032 0.968 14 C -0.593 4.593 15 H 0.083 0.917 16 C -0.175 4.175 17 N -0.529 5.529 18 Si 0.797 3.203 19 H -0.198 1.198 20 H -0.205 1.205 21 H -0.192 1.192 22 C -0.154 4.154 23 C -0.156 4.156 24 C -0.238 4.238 25 H 0.069 0.931 26 H 0.105 0.895 27 H 0.065 0.935 28 H 0.139 0.861 29 H 0.132 0.868 30 H 0.254 0.746 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.101 0.899 34 H 0.076 0.924 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.106 0.894 38 H 0.118 0.882 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.595 -7.758 -3.284 15.153 hybrid contribution 1.373 0.402 0.024 1.431 sum -11.222 -7.356 -3.261 13.809 Atomic orbital electron populations 1.21541 0.92911 1.02801 1.02082 1.21716 0.98459 0.90656 1.06769 1.21599 0.80749 0.93510 0.73961 1.90688 1.55912 1.48048 1.51173 1.45947 1.08182 1.07186 1.75404 1.20287 0.88599 0.86582 0.99480 0.86482 1.22032 1.03795 1.02536 0.92278 1.23995 0.88836 0.82224 0.75412 1.90549 1.68727 1.35949 1.47220 1.86471 1.33599 1.33569 1.73247 1.19904 0.74556 0.97117 0.88133 0.96827 1.21171 0.96890 1.15876 1.25400 0.91724 1.25673 0.98065 0.98709 0.95059 1.70146 1.15240 1.37743 1.29805 0.85341 0.77366 0.78673 0.78951 1.19753 1.20468 1.19215 1.22456 1.04408 0.94460 0.94123 1.22280 0.92481 1.00853 1.00033 1.23267 0.94813 1.02553 1.03194 0.93070 0.89469 0.93532 0.86100 0.86823 0.74593 0.90145 0.91433 0.89860 0.92383 0.90333 0.91341 0.89378 0.88175 0.89474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.20 71.98 0.66 -1.39 16 2 C -0.14 -2.01 6.42 29.85 0.19 -1.81 16 3 C 0.51 12.34 7.79 87.66 0.68 13.03 16 4 O -0.58 -18.21 15.64 -3.04 -0.05 -18.26 16 5 N -0.71 -17.96 4.95 -446.09 -2.21 -20.16 16 6 C 0.16 4.77 3.09 44.25 0.14 4.91 16 7 H 0.12 3.67 7.58 -2.39 -0.02 3.65 16 8 C -0.15 -3.94 9.42 71.98 0.68 -3.26 16 9 C 0.45 17.70 6.54 71.24 0.47 18.17 16 10 O -0.53 -22.60 12.89 21.96 0.28 -22.32 16 11 O -0.35 -16.29 9.75 -51.37 -0.50 -16.79 16 12 C 0.26 13.39 2.25 29.85 0.07 13.45 16 13 H 0.01 0.81 6.91 -2.39 -0.02 0.80 16 14 C -0.56 -30.64 8.88 25.60 0.23 -30.42 16 15 H 0.06 3.53 7.81 -2.91 -0.02 3.50 16 16 C 0.03 1.46 5.30 84.65 0.45 1.91 16 17 N -0.89 -49.00 11.43 21.45 0.25 -48.75 16 18 Si 0.97 42.10 29.54 68.60 2.03 44.12 16 19 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 20 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 21 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 22 C -0.14 -6.60 4.47 -10.79 -0.05 -6.65 16 23 C -0.12 -5.41 9.04 30.62 0.28 -5.13 16 24 C -0.20 -8.40 9.80 30.62 0.30 -8.10 16 25 H 0.05 0.88 8.10 -2.39 -0.02 0.86 16 26 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.05 0.85 8.10 -2.39 -0.02 0.83 16 28 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.42 9.55 7.79 -92.71 -0.72 8.83 16 31 H 0.08 2.22 8.11 -2.39 -0.02 2.20 16 32 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 33 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.27 13.85 8.31 -92.71 -0.77 13.08 16 35 H 0.08 3.97 8.11 -2.38 -0.02 3.95 16 36 H 0.07 3.37 8.05 -2.39 -0.02 3.35 16 37 H 0.09 3.71 8.14 -2.39 -0.02 3.69 16 38 H 0.10 3.61 8.14 -2.39 -0.02 3.60 16 39 H 0.09 3.74 5.37 -2.39 -0.01 3.73 16 Total: -1.00 -65.06 328.97 4.21 -60.85 By element: Atomic # 1 Polarization: 26.28 SS G_CDS: 0.33 Total: 26.61 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: 4.09 Total: -5.30 kcal Atomic # 7 Polarization: -66.95 SS G_CDS: -1.96 Total: -68.92 kcal Atomic # 8 Polarization: -57.10 SS G_CDS: -0.27 Total: -57.36 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.12 kcal Total: -65.06 4.21 -60.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520418890.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.601 kcal (2) G-P(sol) polarization free energy of solvation -65.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds