Wall clock time and date at job start Mon Mar 30 2020 01:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50697 * 109.47053 * 2 1 4 4 O 1.21283 * 120.00126 * 359.97438 * 3 2 1 5 5 N 1.34786 * 120.00044 * 179.97438 * 3 2 1 6 6 C 1.46491 * 120.00085 * 179.97438 * 5 3 2 7 7 H 1.09004 * 109.47720 * 325.00183 * 6 5 3 8 8 C 1.53002 * 109.47193 * 84.99749 * 6 5 3 9 9 C 1.50699 * 109.47300 * 204.99855 * 6 5 3 10 10 O 1.20824 * 119.99703 * 0.02562 * 9 6 5 11 11 O 1.34230 * 120.00234 * 179.97438 * 9 6 5 12 12 C 1.45198 * 117.00100 * 180.02562 * 11 9 6 13 13 H 1.08997 * 109.47227 * 29.99680 * 12 11 9 14 14 C 1.50696 * 109.47574 * 150.00227 * 12 11 9 15 15 H 1.08002 * 120.00068 * 114.35898 * 14 12 11 16 16 C 1.37879 * 119.99717 * 294.64621 * 14 12 11 17 17 N 1.31517 * 119.99808 * 172.33814 * 16 14 12 18 18 Si 1.86797 * 120.00201 * 352.33036 * 16 14 12 19 19 H 1.48502 * 109.46705 * 89.26147 * 18 16 14 20 20 H 1.48494 * 109.47473 * 209.26250 * 18 16 14 21 21 H 1.48506 * 109.47182 * 329.26600 * 18 16 14 22 22 C 1.53011 * 109.46930 * 270.00291 * 12 11 9 23 23 C 1.53000 * 117.49663 * 134.10546 * 22 12 11 24 24 C 1.52999 * 117.49710 * 65.44343 * 22 12 11 25 25 H 1.09003 * 109.47399 * 60.00170 * 1 2 3 26 26 H 1.09001 * 109.47337 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47108 * 300.00407 * 1 2 3 28 28 H 1.08993 * 109.47210 * 240.00011 * 2 1 3 29 29 H 1.09003 * 109.47399 * 119.99830 * 2 1 3 30 30 H 0.97002 * 119.99261 * 0.02562 * 5 3 2 31 31 H 1.09006 * 109.47381 * 179.97438 * 8 6 5 32 32 H 1.08995 * 109.47630 * 300.00311 * 8 6 5 33 33 H 1.09007 * 109.46687 * 60.00367 * 8 6 5 34 34 H 0.96998 * 119.99707 * 179.97438 * 17 16 14 35 35 H 1.08998 * 115.54318 * 279.77401 * 22 12 11 36 36 H 1.08994 * 117.49899 * 359.97438 * 23 22 12 37 37 H 1.09002 * 117.49449 * 145.02314 * 23 22 12 38 38 H 1.09002 * 117.49535 * 214.98108 * 24 22 12 39 39 H 1.08998 * 117.49990 * 359.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 8 1.2441 2.3426 -0.0005 5 7 3.3574 1.6671 0.0005 6 6 3.8457 3.0482 0.0000 7 1 3.1735 3.6712 -0.5902 8 6 3.8964 3.5719 1.4367 9 6 5.2275 3.0923 -0.5998 10 8 5.7505 2.0745 -0.9874 11 8 5.8768 4.2624 -0.7043 12 6 7.2039 4.2297 -1.2925 13 1 7.2626 3.4125 -2.0114 14 6 7.4752 5.5358 -1.9935 15 1 8.2487 6.1947 -1.6273 16 6 6.7319 5.8924 -3.0987 17 7 6.8627 7.0929 -3.6196 18 14 5.5395 4.6704 -3.8563 19 1 4.2108 4.8082 -3.2075 20 1 5.4107 4.9410 -5.3106 21 1 6.0490 3.2904 -3.6527 22 6 8.2447 4.0160 -0.1914 23 6 9.3384 2.9767 -0.4453 24 6 8.2187 2.6811 0.5557 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.9877 0.9298 0.0005 31 1 4.2602 4.5994 1.4363 32 1 2.8970 3.5400 1.8706 33 1 4.5687 2.9490 2.0268 34 1 6.3400 7.3436 -4.3973 35 1 8.5175 4.9055 0.3764 36 1 9.3164 2.4449 -1.3965 37 1 10.3308 3.1822 -0.0440 38 1 8.4749 2.6923 1.6152 39 1 7.4599 1.9553 0.2632 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520418892.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:57 Heat of formation + Delta-G solvation = -107.798419 kcal Electronic energy + Delta-G solvation = -21441.284757 eV Core-core repulsion = 18156.762014 eV Total energy + Delta-G solvation = -3284.522743 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.35168 -39.35519 -36.92182 -35.30470 -34.85236 -33.00697 -32.80108 -30.64215 -28.56527 -25.28165 -24.01475 -23.04079 -21.81159 -20.63312 -20.23730 -19.41397 -17.79992 -17.21412 -16.61541 -16.31888 -15.79754 -15.62494 -14.98313 -14.63054 -14.08238 -13.85628 -13.65599 -13.39968 -12.79287 -12.59714 -12.44509 -12.26022 -11.99526 -11.90051 -11.64800 -11.46562 -11.35002 -11.29002 -10.97723 -10.87919 -10.32457 -9.94181 -9.91693 -9.76952 -9.54153 -9.48627 -9.17516 -9.09708 -8.80874 -6.40753 -4.46578 2.57513 2.75675 2.87960 3.18841 3.25115 3.30843 3.62168 4.21258 4.44708 4.62402 4.89421 4.92912 4.95280 5.18093 5.25177 5.37609 5.38796 5.48559 5.58995 5.61921 5.70606 5.77024 5.84200 5.91116 6.05550 6.10838 6.15081 6.23016 6.38732 6.44342 6.54662 6.67143 6.89283 7.28834 7.46819 7.52882 8.17728 8.18020 8.52712 8.67257 9.20634 10.68573 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.018890 B = 0.006311 C = 0.005306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.918472 B = 4435.394081 C = 5275.815462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.143 4.143 3 C 0.513 3.487 4 O -0.541 6.541 5 N -0.716 5.716 6 C 0.139 3.861 7 H 0.118 0.882 8 C -0.152 4.152 9 C 0.447 3.553 10 O -0.525 6.525 11 O -0.344 6.344 12 C 0.203 3.797 13 H 0.053 0.947 14 C -0.508 4.508 15 H 0.090 0.910 16 C 0.092 3.908 17 N -0.867 5.867 18 Si 0.865 3.135 19 H -0.270 1.270 20 H -0.282 1.282 21 H -0.258 1.258 22 C -0.139 4.139 23 C -0.169 4.169 24 C -0.201 4.201 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.409 0.591 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.272 0.728 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.356 -12.893 8.466 16.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.183 4.183 3 C 0.300 3.700 4 O -0.418 6.418 5 N -0.370 5.370 6 C 0.033 3.967 7 H 0.136 0.864 8 C -0.210 4.210 9 C 0.290 3.710 10 O -0.417 6.417 11 O -0.260 6.260 12 C 0.153 3.847 13 H 0.071 0.929 14 C -0.544 4.544 15 H 0.108 0.892 16 C -0.116 4.116 17 N -0.502 5.502 18 Si 0.691 3.309 19 H -0.195 1.195 20 H -0.208 1.208 21 H -0.182 1.182 22 C -0.157 4.157 23 C -0.207 4.207 24 C -0.238 4.238 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.245 0.755 31 H 0.104 0.896 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.121 0.879 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.100 0.900 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -6.749 -12.335 8.185 16.269 hybrid contribution -0.141 -0.867 -0.554 1.039 sum -6.890 -13.203 7.631 16.733 Atomic orbital electron populations 1.21527 0.92956 1.01480 1.03432 1.21618 0.98606 0.93511 1.04531 1.20811 0.81655 0.92073 0.75471 1.90707 1.55206 1.46500 1.49373 1.45906 1.07599 1.08113 1.75427 1.20508 0.92265 0.84880 0.99076 0.86414 1.22038 1.02934 1.02751 0.93311 1.23458 0.87781 0.83949 0.75830 1.90512 1.68588 1.35768 1.46840 1.87042 1.34547 1.31552 1.72810 1.20797 0.74682 0.99505 0.89754 0.92942 1.21005 1.19380 1.04309 1.09685 0.89235 1.25052 0.95468 0.94823 0.96230 1.69910 1.39785 1.18023 1.22496 0.86955 0.82217 0.82831 0.78850 1.19497 1.20810 1.18199 1.22614 0.99896 0.92361 1.00829 1.22802 0.93665 1.03654 1.00536 1.23163 1.02785 1.01153 0.96659 0.91938 0.92122 0.91956 0.88768 0.88815 0.75463 0.89648 0.91145 0.92044 0.91814 0.87928 0.89070 0.89402 0.89992 0.87980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.20 37.15 0.34 -0.91 16 2 C -0.14 -1.32 6.42 -27.89 -0.18 -1.50 16 3 C 0.51 7.06 7.79 -10.98 -0.09 6.98 16 4 O -0.54 -9.37 15.65 5.56 0.09 -9.28 16 5 N -0.72 -10.13 4.95 -54.93 -0.27 -10.40 16 6 C 0.14 2.34 3.09 -69.09 -0.21 2.12 16 7 H 0.12 2.16 7.58 -51.93 -0.39 1.77 16 8 C -0.15 -2.16 9.42 37.16 0.35 -1.81 16 9 C 0.45 9.00 6.19 36.00 0.22 9.22 16 10 O -0.53 -10.96 12.78 -18.75 -0.24 -11.20 16 11 O -0.34 -7.88 8.58 -39.26 -0.34 -8.22 16 12 C 0.20 4.87 1.52 -27.88 -0.04 4.83 16 13 H 0.05 1.34 5.41 -51.93 -0.28 1.06 16 14 C -0.51 -13.94 9.31 -34.44 -0.32 -14.26 16 15 H 0.09 2.59 7.99 -52.49 -0.42 2.17 16 16 C 0.09 2.59 5.47 -17.82 -0.10 2.50 16 17 N -0.87 -25.33 13.96 55.43 0.77 -24.56 16 18 Si 0.87 21.78 26.22 -169.99 -4.46 17.32 16 19 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 21 H -0.26 -6.50 6.39 56.52 0.36 -6.14 16 22 C -0.14 -2.83 5.29 -90.61 -0.48 -3.31 16 23 C -0.17 -3.00 10.18 -26.69 -0.27 -3.27 16 24 C -0.20 -3.51 9.82 -26.69 -0.26 -3.77 16 25 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 26 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.62 8.10 -51.93 -0.42 0.19 16 28 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.41 5.15 7.79 -40.82 -0.32 4.83 16 31 H 0.08 1.24 8.11 -51.93 -0.42 0.82 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.10 2.07 8.14 -51.93 -0.42 1.65 16 36 H 0.09 1.65 8.08 -51.93 -0.42 1.23 16 37 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.10 1.89 5.59 -51.93 -0.29 1.60 16 LS Contribution 326.64 15.07 4.92 4.92 Total: -1.00 -31.29 326.64 -6.50 -37.79 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -5.94 Total: 6.81 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -1.04 Total: -3.18 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: 0.50 Total: -34.96 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -0.49 Total: -28.70 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.46 Total: 17.32 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.29 -6.50 -37.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520418892.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.005 kcal (2) G-P(sol) polarization free energy of solvation -31.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds