Wall clock time and date at job start Mon Mar 30 2020 01:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50697 * 109.47053 * 2 1 4 4 O 1.21283 * 120.00126 * 359.97438 * 3 2 1 5 5 N 1.34786 * 120.00044 * 179.97438 * 3 2 1 6 6 C 1.46491 * 120.00085 * 179.97438 * 5 3 2 7 7 H 1.09004 * 109.47720 * 325.00183 * 6 5 3 8 8 C 1.53002 * 109.47193 * 84.99749 * 6 5 3 9 9 C 1.50699 * 109.47300 * 204.99855 * 6 5 3 10 10 O 1.20824 * 119.99703 * 0.02562 * 9 6 5 11 11 O 1.34230 * 120.00234 * 179.97438 * 9 6 5 12 12 C 1.45198 * 117.00100 * 180.02562 * 11 9 6 13 13 H 1.08997 * 109.47227 * 29.99680 * 12 11 9 14 14 C 1.50696 * 109.47574 * 150.00227 * 12 11 9 15 15 H 1.08002 * 120.00068 * 114.35898 * 14 12 11 16 16 C 1.37879 * 119.99717 * 294.64621 * 14 12 11 17 17 N 1.31517 * 119.99808 * 172.33814 * 16 14 12 18 18 Si 1.86797 * 120.00201 * 352.33036 * 16 14 12 19 19 H 1.48502 * 109.46705 * 89.26147 * 18 16 14 20 20 H 1.48494 * 109.47473 * 209.26250 * 18 16 14 21 21 H 1.48506 * 109.47182 * 329.26600 * 18 16 14 22 22 C 1.53011 * 109.46930 * 270.00291 * 12 11 9 23 23 C 1.53000 * 117.49663 * 134.10546 * 22 12 11 24 24 C 1.52999 * 117.49710 * 65.44343 * 22 12 11 25 25 H 1.09003 * 109.47399 * 60.00170 * 1 2 3 26 26 H 1.09001 * 109.47337 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47108 * 300.00407 * 1 2 3 28 28 H 1.08993 * 109.47210 * 240.00011 * 2 1 3 29 29 H 1.09003 * 109.47399 * 119.99830 * 2 1 3 30 30 H 0.97002 * 119.99261 * 0.02562 * 5 3 2 31 31 H 1.09006 * 109.47381 * 179.97438 * 8 6 5 32 32 H 1.08995 * 109.47630 * 300.00311 * 8 6 5 33 33 H 1.09007 * 109.46687 * 60.00367 * 8 6 5 34 34 H 0.96998 * 119.99707 * 179.97438 * 17 16 14 35 35 H 1.08998 * 115.54318 * 279.77401 * 22 12 11 36 36 H 1.08994 * 117.49899 * 359.97438 * 23 22 12 37 37 H 1.09002 * 117.49449 * 145.02314 * 23 22 12 38 38 H 1.09002 * 117.49535 * 214.98108 * 24 22 12 39 39 H 1.08998 * 117.49990 * 359.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 8 1.2441 2.3426 -0.0005 5 7 3.3574 1.6671 0.0005 6 6 3.8457 3.0482 0.0000 7 1 3.1735 3.6712 -0.5902 8 6 3.8964 3.5719 1.4367 9 6 5.2275 3.0923 -0.5998 10 8 5.7505 2.0745 -0.9874 11 8 5.8768 4.2624 -0.7043 12 6 7.2039 4.2297 -1.2925 13 1 7.2626 3.4125 -2.0114 14 6 7.4752 5.5358 -1.9935 15 1 8.2487 6.1947 -1.6273 16 6 6.7319 5.8924 -3.0987 17 7 6.8627 7.0929 -3.6196 18 14 5.5395 4.6704 -3.8563 19 1 4.2108 4.8082 -3.2075 20 1 5.4107 4.9410 -5.3106 21 1 6.0490 3.2904 -3.6527 22 6 8.2447 4.0160 -0.1914 23 6 9.3384 2.9767 -0.4453 24 6 8.2187 2.6811 0.5557 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.9877 0.9298 0.0005 31 1 4.2602 4.5994 1.4363 32 1 2.8970 3.5400 1.8706 33 1 4.5687 2.9490 2.0268 34 1 6.3400 7.3436 -4.3973 35 1 8.5175 4.9055 0.3764 36 1 9.3164 2.4449 -1.3965 37 1 10.3308 3.1822 -0.0440 38 1 8.4749 2.6923 1.6152 39 1 7.4599 1.9553 0.2632 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001520418892.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:56 Heat of formation + Delta-G solvation = -127.989292 kcal Electronic energy + Delta-G solvation = -21442.160299 eV Core-core repulsion = 18156.762014 eV Total energy + Delta-G solvation = -3285.398285 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.85961 -40.67851 -38.48821 -36.90300 -36.21275 -34.92287 -33.86347 -31.84921 -30.44244 -26.46033 -25.43358 -24.61855 -23.20762 -22.02794 -21.42948 -21.11534 -19.38432 -18.95254 -18.15998 -17.77068 -17.32469 -16.74842 -16.51840 -16.11823 -15.58866 -15.37283 -14.96646 -14.70671 -14.47089 -14.03551 -13.74449 -13.43202 -13.41875 -13.27895 -13.10175 -12.88159 -12.72011 -12.64525 -12.32096 -12.11349 -12.03141 -11.93303 -11.43999 -11.31893 -11.07088 -11.01499 -10.96420 -10.78550 -10.36959 -8.56898 -6.65666 1.09473 1.14152 1.20440 1.25253 1.43617 1.62671 2.11549 2.24636 2.89909 2.99150 3.63308 3.78905 3.89056 3.93477 3.97387 4.07910 4.21201 4.24161 4.27271 4.39672 4.61114 4.69338 4.75807 4.77856 4.83058 4.99422 4.99664 5.06027 5.08663 5.18020 5.26143 5.29650 5.31409 5.37565 5.76445 6.07911 6.40309 6.45556 6.81620 7.04749 7.12739 8.56924 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.018890 B = 0.006311 C = 0.005306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.918472 B = 4435.394081 C = 5275.815462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.134 4.134 3 C 0.509 3.491 4 O -0.581 6.581 5 N -0.711 5.711 6 C 0.144 3.856 7 H 0.100 0.900 8 C -0.144 4.144 9 C 0.445 3.555 10 O -0.530 6.530 11 O -0.358 6.358 12 C 0.212 3.788 13 H 0.037 0.963 14 C -0.519 4.519 15 H 0.062 0.938 16 C 0.050 3.950 17 N -0.908 5.908 18 Si 0.913 3.087 19 H -0.270 1.270 20 H -0.270 1.270 21 H -0.259 1.259 22 C -0.170 4.170 23 C -0.159 4.159 24 C -0.176 4.176 25 H 0.042 0.958 26 H 0.089 0.911 27 H 0.051 0.949 28 H 0.113 0.887 29 H 0.126 0.874 30 H 0.419 0.581 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.276 0.724 35 H 0.100 0.900 36 H 0.084 0.916 37 H 0.116 0.884 38 H 0.113 0.887 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.775 -15.715 9.811 19.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.174 4.174 3 C 0.298 3.702 4 O -0.461 6.461 5 N -0.366 5.366 6 C 0.037 3.963 7 H 0.118 0.882 8 C -0.202 4.202 9 C 0.289 3.711 10 O -0.422 6.422 11 O -0.274 6.274 12 C 0.160 3.840 13 H 0.055 0.945 14 C -0.555 4.555 15 H 0.080 0.920 16 C -0.154 4.154 17 N -0.546 5.546 18 Si 0.737 3.263 19 H -0.195 1.195 20 H -0.195 1.195 21 H -0.183 1.183 22 C -0.189 4.189 23 C -0.196 4.196 24 C -0.213 4.213 25 H 0.061 0.939 26 H 0.108 0.892 27 H 0.070 0.930 28 H 0.132 0.868 29 H 0.144 0.856 30 H 0.257 0.743 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.118 0.882 36 H 0.102 0.898 37 H 0.134 0.866 38 H 0.131 0.869 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.162 -15.192 9.532 19.312 hybrid contribution -0.008 -0.039 -0.915 0.916 sum -7.170 -15.230 8.617 18.911 Atomic orbital electron populations 1.21548 0.93009 1.02865 1.01982 1.21714 0.98389 0.90357 1.06921 1.21717 0.80844 0.93654 0.73989 1.90696 1.56025 1.48210 1.51148 1.45916 1.08191 1.07055 1.75442 1.20401 0.89314 0.86591 0.99980 0.88239 1.21995 1.03910 1.02564 0.91708 1.23981 0.88720 0.82865 0.75559 1.90503 1.69049 1.35659 1.46989 1.86910 1.34243 1.33197 1.73058 1.20434 0.75987 0.96750 0.90789 0.94507 1.21183 1.18891 1.05131 1.10338 0.91970 1.25656 0.96944 0.95978 0.96780 1.69986 1.41514 1.19511 1.23567 0.86221 0.80386 0.80864 0.78827 1.19476 1.19527 1.18349 1.22466 1.01012 0.93990 1.01393 1.22938 0.94672 1.01393 1.00610 1.23186 1.01941 0.97954 0.98190 0.93858 0.89249 0.93028 0.86841 0.85647 0.74311 0.90311 0.90226 0.90304 0.91454 0.88207 0.89791 0.86571 0.86909 0.88872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.20 71.98 0.66 -1.52 16 2 C -0.13 -2.04 6.42 29.84 0.19 -1.85 16 3 C 0.51 12.99 7.79 87.65 0.68 13.68 16 4 O -0.58 -19.68 15.65 -3.04 -0.05 -19.73 16 5 N -0.71 -18.60 4.95 -446.10 -2.21 -20.81 16 6 C 0.14 4.68 3.09 44.25 0.14 4.82 16 7 H 0.10 3.65 7.58 -2.39 -0.02 3.63 16 8 C -0.14 -3.84 9.42 71.98 0.68 -3.16 16 9 C 0.44 17.45 6.19 71.24 0.44 17.89 16 10 O -0.53 -21.29 12.78 21.97 0.28 -21.01 16 11 O -0.36 -16.36 8.58 -51.41 -0.44 -16.80 16 12 C 0.21 10.19 1.52 29.85 0.05 10.24 16 13 H 0.04 1.89 5.41 -2.39 -0.01 1.87 16 14 C -0.52 -29.30 9.31 25.60 0.24 -29.07 16 15 H 0.06 3.76 7.99 -2.91 -0.02 3.73 16 16 C 0.05 2.90 5.47 84.65 0.46 3.36 16 17 N -0.91 -54.60 13.96 21.45 0.30 -54.30 16 18 Si 0.91 45.43 26.22 68.60 1.80 47.23 16 19 H -0.27 -13.29 7.11 99.48 0.71 -12.58 16 20 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 21 H -0.26 -12.82 6.39 99.48 0.64 -12.19 16 22 C -0.17 -6.80 5.29 -10.79 -0.06 -6.85 16 23 C -0.16 -5.28 10.18 30.62 0.31 -4.97 16 24 C -0.18 -5.66 9.82 30.62 0.30 -5.36 16 25 H 0.04 0.85 8.10 -2.39 -0.02 0.83 16 26 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.05 0.93 8.10 -2.38 -0.02 0.91 16 28 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.42 9.35 7.79 -92.71 -0.72 8.63 16 31 H 0.08 2.21 8.11 -2.38 -0.02 2.19 16 32 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 34 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 35 H 0.10 4.01 8.14 -2.39 -0.02 3.99 16 36 H 0.08 2.91 8.08 -2.39 -0.02 2.89 16 37 H 0.12 3.18 8.14 -2.39 -0.02 3.16 16 38 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 39 H 0.09 3.20 5.59 -2.39 -0.01 3.18 16 Total: -1.00 -69.34 326.64 4.03 -65.31 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: 0.26 Total: 22.92 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: 4.09 Total: -2.81 kcal Atomic # 7 Polarization: -73.20 SS G_CDS: -1.91 Total: -75.11 kcal Atomic # 8 Polarization: -57.33 SS G_CDS: -0.21 Total: -57.54 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.80 Total: 47.23 kcal Total: -69.34 4.03 -65.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520418892.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.684 kcal (2) G-P(sol) polarization free energy of solvation -69.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds