Wall clock time and date at job start Mon Mar 30 2020 01:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47514 * 2 1 4 4 C 1.53001 * 109.47345 * 119.99762 * 2 1 3 5 5 C 1.50700 * 109.47116 * 294.32072 * 4 2 1 6 6 H 1.07999 * 119.99691 * 355.61537 * 5 4 2 7 7 C 1.37876 * 119.99756 * 175.62198 * 5 4 2 8 8 N 1.31520 * 119.99767 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 120.00459 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47176 * 270.00192 * 9 7 5 11 11 H 1.48501 * 109.47189 * 149.99744 * 9 7 5 12 12 H 1.48499 * 109.47025 * 30.00142 * 9 7 5 13 13 N 1.46898 * 109.47215 * 239.99746 * 2 1 3 14 14 C 1.48504 * 111.00158 * 179.48635 * 13 2 1 15 15 C 1.54268 * 104.74183 * 200.67054 * 14 13 2 16 16 H 1.09005 * 113.17450 * 147.34599 * 15 14 13 17 17 C 1.54391 * 108.77568 * 273.39883 * 15 14 13 18 18 O 1.44389 * 104.91877 * 87.13728 * 17 15 14 19 19 C 1.46064 * 105.40498 * 40.85361 * 18 17 15 20 20 C 1.54393 * 104.10009 * 319.25194 * 19 18 17 21 21 C 1.50709 * 112.67797 * 146.94234 * 20 19 18 22 22 O 1.20826 * 119.99649 * 242.51981 * 21 20 19 23 23 O 1.34230 * 119.99957 * 62.52440 * 21 20 19 24 24 C 1.48515 * 110.99817 * 64.09305 * 13 2 1 25 25 H 1.08998 * 109.47143 * 300.00209 * 1 2 3 26 26 H 1.09001 * 109.47126 * 60.00200 * 1 2 3 27 27 H 1.08995 * 109.47209 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47415 * 174.31500 * 4 2 1 29 29 H 1.09004 * 109.46714 * 54.31456 * 4 2 1 30 30 H 0.96996 * 119.99863 * 179.97438 * 8 7 5 31 31 H 1.09004 * 110.38295 * 319.48022 * 14 13 2 32 32 H 1.08996 * 110.38577 * 81.85662 * 14 13 2 33 33 H 1.08997 * 110.35631 * 205.99690 * 17 15 14 34 34 H 1.09000 * 110.34813 * 328.17481 * 17 15 14 35 35 H 1.09000 * 110.96253 * 200.55582 * 19 18 17 36 36 H 1.08993 * 110.51781 * 77.73753 * 19 18 17 37 37 H 0.96698 * 116.99725 * 179.97438 * 23 21 20 38 38 H 1.08991 * 110.38305 * 278.14984 * 24 13 2 39 39 H 1.08995 * 110.38047 * 40.51889 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6558 0.0658 2.4757 6 1 1.1658 1.0226 2.3717 7 6 1.9301 -0.4356 3.7304 8 7 1.5952 0.2514 4.8007 9 14 2.7772 -2.0907 3.9103 10 1 1.7547 -3.1656 3.9762 11 1 3.5862 -2.1000 5.1555 12 1 3.6642 -2.3223 2.7420 13 7 2.0197 -0.6925 -1.1994 14 6 3.5041 -0.7016 -1.2399 15 6 3.8548 -0.9504 -2.7215 16 1 4.7748 -0.4558 -3.0334 17 6 3.8812 -2.4727 -2.9771 18 8 2.5168 -2.8195 -3.2977 19 6 2.0340 -1.7412 -4.1566 20 6 2.6089 -0.4613 -3.5125 21 6 2.9411 0.6015 -4.5281 22 8 4.0828 0.9740 -4.6612 23 8 1.9688 1.1342 -5.2847 24 6 1.6259 0.0357 -2.4324 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1252 -0.8102 1.1998 29 1 1.5959 -1.7153 1.3016 30 1 1.7878 -0.1015 5.6834 31 1 3.8987 0.2604 -0.9128 32 1 3.8961 -1.5055 -0.6169 33 1 4.5383 -2.7052 -3.8151 34 1 4.2081 -3.0017 -2.0818 35 1 0.9446 -1.7059 -4.1630 36 1 2.4162 -1.8601 -5.1704 37 1 2.2304 1.8128 -5.9220 38 1 0.6012 -0.2121 -2.7087 39 1 1.7319 1.1109 -2.2885 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573579097.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:23 Heat of formation + Delta-G solvation = -150.172551 kcal Electronic energy + Delta-G solvation = -21891.560226 eV Core-core repulsion = 18605.200003 eV Total energy + Delta-G solvation = -3286.360223 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.37142 -40.47570 -38.42137 -37.22457 -35.60249 -34.11507 -32.25282 -31.30094 -29.26231 -27.11100 -25.60583 -25.22034 -23.92730 -22.56749 -20.93769 -20.48019 -19.15818 -19.03867 -18.25117 -17.16846 -16.97097 -16.48033 -16.16781 -16.01882 -15.56534 -15.40144 -14.98724 -14.77100 -14.47485 -14.26250 -13.96727 -13.48624 -13.17936 -12.98351 -12.74801 -12.71069 -12.59989 -12.52229 -12.34170 -12.14629 -11.92238 -11.83141 -11.73229 -11.59701 -11.37739 -11.18761 -10.74358 -10.65313 -9.43052 -8.27927 -6.30528 0.98237 1.36941 1.37320 1.49561 1.83108 2.36903 2.90261 2.95700 3.07967 3.08172 3.32617 3.72462 3.92949 4.02512 4.15527 4.19247 4.25817 4.46045 4.51799 4.53779 4.61737 4.67255 4.71825 4.73735 4.80157 4.84346 4.92242 5.01587 5.14472 5.22819 5.35739 5.46192 5.49684 5.64855 5.74687 5.89358 6.09138 6.31684 6.75991 6.87448 7.33421 8.88493 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.027084 B = 0.005364 C = 0.004999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.563943 B = 5219.062445 C = 5600.097698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.091 3.909 3 H 0.020 0.980 4 C 0.005 3.995 5 C -0.520 4.520 6 H 0.036 0.964 7 C 0.009 3.991 8 N -0.950 5.950 9 Si 0.945 3.055 10 H -0.268 1.268 11 H -0.285 1.285 12 H -0.250 1.250 13 N -0.498 5.498 14 C 0.038 3.962 15 C -0.108 4.108 16 H 0.115 0.885 17 C 0.059 3.941 18 O -0.374 6.374 19 C 0.077 3.923 20 C -0.095 4.095 21 C 0.513 3.487 22 O -0.537 6.537 23 O -0.499 6.499 24 C 0.056 3.944 25 H 0.044 0.956 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.014 0.986 29 H 0.020 0.980 30 H 0.265 0.735 31 H 0.035 0.965 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.099 0.901 35 H 0.119 0.881 36 H 0.080 0.920 37 H 0.432 0.568 38 H 0.110 0.890 39 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.367 -3.165 -22.913 23.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.017 4.017 3 H 0.038 0.962 4 C -0.033 4.033 5 C -0.559 4.559 6 H 0.054 0.946 7 C -0.188 4.188 8 N -0.591 5.591 9 Si 0.769 3.231 10 H -0.193 1.193 11 H -0.211 1.211 12 H -0.173 1.173 13 N -0.222 5.222 14 C -0.090 4.090 15 C -0.127 4.127 16 H 0.133 0.867 17 C -0.018 4.018 18 O -0.293 6.293 19 C 0.000 4.000 20 C -0.097 4.097 21 C 0.355 3.645 22 O -0.426 6.426 23 O -0.313 6.313 24 C -0.072 4.072 25 H 0.063 0.937 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.033 0.967 29 H 0.038 0.962 30 H 0.074 0.926 31 H 0.053 0.947 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.117 0.883 35 H 0.137 0.863 36 H 0.098 0.902 37 H 0.295 0.705 38 H 0.128 0.872 39 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 2.195 -4.088 -22.394 22.869 hybrid contribution 0.962 1.358 0.492 1.735 sum 3.156 -2.729 -21.902 22.296 Atomic orbital electron populations 1.21612 0.93570 1.01951 1.00874 1.21596 0.96496 0.94110 0.89490 0.96203 1.19471 0.95841 0.95839 0.92116 1.21343 1.38295 1.05282 0.90941 0.94569 1.25889 0.96132 1.01335 0.95469 1.70056 1.49735 1.40712 0.98618 0.85728 0.79451 0.79844 0.78050 1.19323 1.21143 1.17326 1.65491 1.07988 1.47554 1.01178 1.23147 0.89325 1.00824 0.95705 1.23342 0.97432 0.98249 0.93722 0.86675 1.23479 0.84420 0.92069 1.01846 1.89437 1.27295 1.43808 1.68733 1.23674 1.01395 0.81621 0.93288 1.22463 0.98383 0.95020 0.93855 1.22503 0.82435 0.80269 0.79267 1.90716 1.23404 1.60794 1.67732 1.84493 1.40887 1.55420 1.50451 1.23086 0.99358 0.96028 0.88703 0.93681 0.91707 0.92358 0.96725 0.96154 0.92581 0.94690 0.89713 0.90303 0.88299 0.86309 0.90190 0.70537 0.87203 0.94175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.47 8.96 71.98 0.64 -3.82 16 2 C 0.09 3.59 1.85 44.92 0.08 3.68 16 3 H 0.02 0.84 7.97 -2.39 -0.02 0.82 16 4 C 0.01 0.24 3.50 29.85 0.10 0.34 16 5 C -0.52 -29.78 8.88 25.60 0.23 -29.55 16 6 H 0.04 2.27 7.52 -2.91 -0.02 2.25 16 7 C 0.01 0.50 5.47 84.65 0.46 0.96 16 8 N -0.95 -59.71 13.96 21.45 0.30 -59.41 16 9 Si 0.95 44.94 27.38 68.60 1.88 46.82 16 10 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 11 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 12 H -0.25 -11.11 6.67 99.48 0.66 -10.44 16 13 N -0.50 -16.15 5.05 -857.11 -4.33 -20.48 16 14 C 0.04 1.16 4.78 86.42 0.41 1.57 16 15 C -0.11 -2.61 3.76 -9.04 -0.03 -2.64 16 16 H 0.12 2.73 6.96 -2.38 -0.02 2.72 16 17 C 0.06 1.27 7.06 72.45 0.51 1.78 16 18 O -0.37 -9.33 11.55 -148.98 -1.72 -11.05 16 19 C 0.08 1.47 6.74 72.45 0.49 1.96 16 20 C -0.10 -2.09 1.02 -51.17 -0.05 -2.14 16 21 C 0.51 10.48 7.09 71.24 0.51 10.99 16 22 O -0.54 -13.91 16.38 21.96 0.36 -13.55 16 23 O -0.50 -6.77 13.42 -51.42 -0.69 -7.46 16 24 C 0.06 1.44 4.51 86.42 0.39 1.83 16 25 H 0.04 1.87 7.09 -2.39 -0.02 1.85 16 26 H 0.06 1.92 7.04 -2.39 -0.02 1.90 16 27 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.01 0.68 6.02 -2.39 -0.01 0.67 16 29 H 0.02 0.97 7.33 -2.39 -0.02 0.95 16 30 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 31 H 0.03 1.15 7.96 -2.39 -0.02 1.13 16 32 H 0.08 2.68 6.88 -2.39 -0.02 2.66 16 33 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.10 2.16 7.50 -2.39 -0.02 2.14 16 35 H 0.12 1.97 7.49 -2.39 -0.02 1.96 16 36 H 0.08 1.21 7.98 -2.39 -0.02 1.19 16 37 H 0.43 2.01 9.10 -74.06 -0.67 1.33 16 38 H 0.11 2.47 7.02 -2.39 -0.02 2.46 16 39 H 0.04 1.08 7.75 -2.39 -0.02 1.06 16 Total: -1.00 -71.44 308.47 -0.11 -71.55 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: 0.35 Total: 8.63 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: 3.74 Total: -15.04 kcal Atomic # 7 Polarization: -75.86 SS G_CDS: -4.03 Total: -79.89 kcal Atomic # 8 Polarization: -30.02 SS G_CDS: -2.05 Total: -32.07 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.88 Total: 46.82 kcal Total: -71.44 -0.11 -71.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573579097.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.627 kcal (2) G-P(sol) polarization free energy of solvation -71.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds