Wall clock time and date at job start Mon Mar 30 2020 01:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.46958 * 2 1 4 4 C 1.52994 * 109.47716 * 239.99639 * 2 1 3 5 5 C 1.50697 * 109.47436 * 174.99871 * 4 2 1 6 6 H 1.07999 * 120.00115 * 0.02562 * 5 4 2 7 7 C 1.37884 * 120.00083 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99788 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00068 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46853 * 90.00197 * 9 7 5 11 11 H 1.48500 * 109.47397 * 210.00500 * 9 7 5 12 12 H 1.48502 * 109.47083 * 330.00720 * 9 7 5 13 13 N 1.46900 * 109.47077 * 119.99015 * 2 1 3 14 14 C 1.48508 * 110.99463 * 50.50310 * 13 2 1 15 15 C 1.54278 * 104.74270 * 200.67863 * 14 13 2 16 16 H 1.08996 * 112.64878 * 147.69041 * 15 14 13 17 17 C 1.54391 * 108.77900 * 273.36697 * 15 14 13 18 18 O 1.44385 * 105.00568 * 87.73528 * 17 15 14 19 19 C 1.44644 * 105.11942 * 40.75530 * 18 17 15 20 20 C 1.54387 * 104.95593 * 319.27123 * 19 18 17 21 21 C 1.50704 * 113.20177 * 146.80200 * 20 19 18 22 22 O 1.20828 * 119.99828 * 242.39931 * 21 20 19 23 23 O 1.34232 * 120.00250 * 62.39137 * 21 20 19 24 24 C 1.48504 * 111.00359 * 295.10523 * 13 2 1 25 25 H 1.09003 * 109.47081 * 172.75252 * 1 2 3 26 26 H 1.08997 * 109.47712 * 292.75950 * 1 2 3 27 27 H 1.09008 * 109.47002 * 52.75923 * 1 2 3 28 28 H 1.09004 * 109.46925 * 294.99938 * 4 2 1 29 29 H 1.09002 * 109.47397 * 54.99796 * 4 2 1 30 30 H 0.97001 * 119.99715 * 179.97438 * 8 7 5 31 31 H 1.08995 * 110.38539 * 81.86481 * 14 13 2 32 32 H 1.08996 * 110.48165 * 319.53924 * 14 13 2 33 33 H 1.08998 * 110.35254 * 206.65303 * 17 15 14 34 34 H 1.09007 * 110.35232 * 328.82577 * 17 15 14 35 35 H 1.08998 * 110.32378 * 200.39941 * 19 18 17 36 36 H 1.09000 * 110.33420 * 78.15099 * 19 18 17 37 37 H 0.96699 * 117.00110 * 180.02562 * 23 21 20 38 38 H 1.08994 * 110.38534 * 278.15027 * 24 13 2 39 39 H 1.09004 * 110.37976 * 40.40599 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5419 -0.6149 -1.3125 6 1 4.0790 -0.0861 -0.5390 7 6 4.2306 -1.1936 -2.3576 8 7 3.5766 -1.8379 -3.2992 9 14 6.0922 -1.0611 -2.4366 10 1 6.7010 -2.2130 -1.7240 11 1 6.5293 -1.0696 -3.8557 12 1 6.5261 0.2047 -1.7926 13 7 2.0196 -0.6923 1.1996 14 6 1.3655 -2.0166 1.3538 15 6 1.5436 -2.3711 2.8447 16 1 0.7132 -2.9568 3.2390 17 6 2.9069 -3.0717 3.0296 18 8 3.8518 -2.0007 3.2420 19 6 3.1703 -1.0623 4.1064 20 6 1.7219 -1.0100 3.5746 21 6 0.6989 -0.7896 4.6590 22 8 -0.1405 -1.6308 4.8777 23 8 0.7201 0.3412 5.3820 24 6 1.6424 0.0462 2.4315 25 1 -0.3633 -1.0195 -0.1296 26 1 -0.3634 0.3975 0.9476 27 1 -0.3633 0.6220 -0.8182 28 1 1.7517 -1.7716 -1.2054 29 1 1.6055 -0.2619 -2.1369 30 1 4.0611 -2.2447 -4.0346 31 1 1.8581 -2.7588 0.7257 32 1 0.3068 -1.9506 1.1032 33 1 2.8798 -3.7310 3.8972 34 1 3.1680 -3.6355 2.1340 35 1 3.6350 -0.0787 4.0383 36 1 3.1834 -1.4180 5.1366 37 1 0.0440 0.4373 6.0666 38 1 2.3436 0.8600 2.6160 39 1 0.6269 0.4330 2.3464 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573579098.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:26 Heat of formation + Delta-G solvation = -119.074224 kcal Electronic energy + Delta-G solvation = -22183.115061 eV Core-core repulsion = 18898.103362 eV Total energy + Delta-G solvation = -3285.011699 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.25512 -39.44780 -37.20779 -36.32519 -33.69768 -32.16583 -30.85085 -29.31264 -27.33442 -25.90524 -24.37721 -23.92063 -22.60569 -21.41527 -19.78261 -18.73112 -18.14786 -17.26975 -16.15889 -15.90962 -15.78107 -15.22697 -14.81067 -14.68384 -14.36022 -13.94851 -13.74894 -13.34953 -12.78968 -12.43960 -12.22316 -11.86315 -11.79373 -11.65092 -11.44476 -11.30921 -11.21363 -11.00474 -10.88628 -10.64442 -10.50682 -10.42987 -10.33577 -9.96995 -9.50438 -9.18358 -8.98283 -8.23106 -7.67675 -5.85695 -3.83192 1.95710 2.75490 3.44047 3.49507 3.54365 4.07370 4.10867 4.51531 4.58719 4.62930 4.84009 5.10226 5.13324 5.18567 5.51514 5.54380 5.55956 5.64585 5.71042 5.75036 5.81977 5.83402 5.90097 5.97365 6.05807 6.10536 6.24858 6.32808 6.51649 6.63327 6.91370 6.93692 7.38765 7.49322 7.67545 7.79880 7.93942 8.14861 8.59748 9.22980 9.78852 11.26284 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024282 B = 0.006129 C = 0.005518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.844507 B = 4567.698420 C = 5073.204381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.074 3.926 3 H 0.073 0.927 4 C 0.034 3.966 5 C -0.488 4.488 6 H 0.062 0.938 7 C 0.051 3.949 8 N -0.905 5.905 9 Si 0.891 3.109 10 H -0.282 1.282 11 H -0.291 1.291 12 H -0.275 1.275 13 N -0.464 5.464 14 C 0.038 3.962 15 C -0.114 4.114 16 H 0.108 0.892 17 C 0.057 3.943 18 O -0.342 6.342 19 C 0.076 3.924 20 C -0.099 4.099 21 C 0.506 3.494 22 O -0.511 6.511 23 O -0.510 6.510 24 C 0.050 3.950 25 H 0.057 0.943 26 H 0.041 0.959 27 H 0.058 0.942 28 H 0.017 0.983 29 H 0.019 0.981 30 H 0.257 0.743 31 H 0.096 0.904 32 H 0.049 0.951 33 H 0.053 0.947 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.054 0.946 37 H 0.409 0.591 38 H 0.090 0.910 39 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.134 2.040 16.170 17.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.034 4.034 3 H 0.091 0.909 4 C -0.003 4.003 5 C -0.527 4.527 6 H 0.080 0.920 7 C -0.148 4.148 8 N -0.546 5.546 9 Si 0.719 3.281 10 H -0.209 1.209 11 H -0.218 1.218 12 H -0.200 1.200 13 N -0.187 5.187 14 C -0.090 4.090 15 C -0.133 4.133 16 H 0.126 0.874 17 C -0.020 4.020 18 O -0.260 6.260 19 C -0.001 4.001 20 C -0.101 4.101 21 C 0.347 3.653 22 O -0.399 6.399 23 O -0.321 6.321 24 C -0.079 4.079 25 H 0.076 0.924 26 H 0.060 0.940 27 H 0.077 0.923 28 H 0.036 0.964 29 H 0.037 0.963 30 H 0.066 0.934 31 H 0.114 0.886 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.072 0.928 37 H 0.267 0.733 38 H 0.109 0.891 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.206 1.655 15.581 16.511 hybrid contribution -0.699 0.148 0.519 0.883 sum -5.905 1.803 16.101 17.244 Atomic orbital electron populations 1.22566 0.99763 1.01774 1.00564 1.22104 0.90087 0.98874 0.92306 0.90863 1.19129 0.96513 0.95212 0.89467 1.21170 0.91635 1.32946 1.06938 0.91993 1.24991 0.98022 0.95866 0.95962 1.69968 1.35197 1.37069 1.12407 0.86614 0.86430 0.78462 0.76566 1.20851 1.21768 1.20024 1.65727 1.52032 1.01058 0.99835 1.23231 0.98148 0.94441 0.93169 1.23392 0.99928 0.93423 0.96524 0.87434 1.23439 0.86853 0.90162 1.01516 1.89323 1.36180 1.32505 1.67961 1.23210 0.87979 0.95861 0.93081 1.22766 0.94620 0.99700 0.93002 1.22793 0.83639 0.78367 0.80475 1.90701 1.37510 1.44604 1.67042 1.84567 1.57515 1.41321 1.48687 1.23396 1.00053 0.95104 0.89341 0.92448 0.94022 0.92298 0.96427 0.96290 0.93380 0.88558 0.93309 0.92931 0.87874 0.87798 0.92807 0.73261 0.89137 0.93744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.15 8.26 37.15 0.31 -2.84 16 2 C 0.07 1.48 2.31 -67.72 -0.16 1.32 16 3 H 0.07 1.48 8.13 -51.93 -0.42 1.06 16 4 C 0.03 0.85 4.44 -27.89 -0.12 0.72 16 5 C -0.49 -13.62 8.84 -34.44 -0.30 -13.92 16 6 H 0.06 1.74 7.74 -52.49 -0.41 1.34 16 7 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 8 N -0.91 -27.23 13.29 55.43 0.74 -26.50 16 9 Si 0.89 22.30 29.54 -169.99 -5.02 17.28 16 10 H -0.28 -7.06 7.11 56.52 0.40 -6.65 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 N -0.46 -8.55 4.96 -221.23 -1.10 -9.65 16 14 C 0.04 0.64 4.90 -2.26 -0.01 0.63 16 15 C -0.11 -1.64 3.71 -87.91 -0.33 -1.97 16 16 H 0.11 1.50 6.96 -51.93 -0.36 1.14 16 17 C 0.06 0.83 7.04 37.89 0.27 1.09 16 18 O -0.34 -5.67 11.55 -35.23 -0.41 -6.07 16 19 C 0.08 1.01 6.65 37.88 0.25 1.26 16 20 C -0.10 -1.34 1.07 -152.11 -0.16 -1.51 16 21 C 0.51 6.29 7.19 36.01 0.26 6.55 16 22 O -0.51 -7.51 16.38 -18.75 -0.31 -7.82 16 23 O -0.51 -4.72 13.42 -39.26 -0.53 -5.25 16 24 C 0.05 0.74 5.41 -1.42 -0.01 0.74 16 25 H 0.06 0.97 6.36 -51.93 -0.33 0.64 16 26 H 0.04 0.62 5.99 -51.93 -0.31 0.31 16 27 H 0.06 0.95 8.14 -51.92 -0.42 0.53 16 28 H 0.02 0.46 7.02 -51.93 -0.36 0.10 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.10 1.82 6.97 -51.93 -0.36 1.46 16 32 H 0.05 0.80 5.44 -51.93 -0.28 0.52 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.10 1.54 7.49 -51.92 -0.39 1.15 16 35 H 0.10 1.29 7.55 -51.93 -0.39 0.90 16 36 H 0.05 0.61 8.00 -51.93 -0.42 0.20 16 37 H 0.41 1.90 9.10 45.56 0.41 2.31 16 38 H 0.09 1.31 7.56 -51.93 -0.39 0.91 16 39 H 0.04 0.64 5.70 -51.93 -0.30 0.35 16 LS Contribution 308.48 15.07 4.65 4.65 Total: -1.00 -32.76 308.48 -6.79 -39.55 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -4.71 Total: 0.36 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -0.11 Total: -6.56 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: -0.36 Total: -36.15 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -1.24 Total: -19.13 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.76 -6.79 -39.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573579098.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.523 kcal (2) G-P(sol) polarization free energy of solvation -32.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds