Wall clock time and date at job start Mon Mar 30 2020 01:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.46958 * 2 1 4 4 C 1.52994 * 109.47716 * 239.99639 * 2 1 3 5 5 C 1.50697 * 109.47436 * 174.99871 * 4 2 1 6 6 H 1.07999 * 120.00115 * 0.02562 * 5 4 2 7 7 C 1.37884 * 120.00083 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99788 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00068 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46853 * 90.00197 * 9 7 5 11 11 H 1.48500 * 109.47397 * 210.00500 * 9 7 5 12 12 H 1.48502 * 109.47083 * 330.00720 * 9 7 5 13 13 N 1.46900 * 109.47077 * 119.99015 * 2 1 3 14 14 C 1.48508 * 110.99463 * 50.50310 * 13 2 1 15 15 C 1.54278 * 104.74270 * 200.67863 * 14 13 2 16 16 H 1.08996 * 112.64878 * 147.69041 * 15 14 13 17 17 C 1.54391 * 108.77900 * 273.36697 * 15 14 13 18 18 O 1.44385 * 105.00568 * 87.73528 * 17 15 14 19 19 C 1.44644 * 105.11942 * 40.75530 * 18 17 15 20 20 C 1.54387 * 104.95593 * 319.27123 * 19 18 17 21 21 C 1.50704 * 113.20177 * 146.80200 * 20 19 18 22 22 O 1.20828 * 119.99828 * 242.39931 * 21 20 19 23 23 O 1.34232 * 120.00250 * 62.39137 * 21 20 19 24 24 C 1.48504 * 111.00359 * 295.10523 * 13 2 1 25 25 H 1.09003 * 109.47081 * 172.75252 * 1 2 3 26 26 H 1.08997 * 109.47712 * 292.75950 * 1 2 3 27 27 H 1.09008 * 109.47002 * 52.75923 * 1 2 3 28 28 H 1.09004 * 109.46925 * 294.99938 * 4 2 1 29 29 H 1.09002 * 109.47397 * 54.99796 * 4 2 1 30 30 H 0.97001 * 119.99715 * 179.97438 * 8 7 5 31 31 H 1.08995 * 110.38539 * 81.86481 * 14 13 2 32 32 H 1.08996 * 110.48165 * 319.53924 * 14 13 2 33 33 H 1.08998 * 110.35254 * 206.65303 * 17 15 14 34 34 H 1.09007 * 110.35232 * 328.82577 * 17 15 14 35 35 H 1.08998 * 110.32378 * 200.39941 * 19 18 17 36 36 H 1.09000 * 110.33420 * 78.15099 * 19 18 17 37 37 H 0.96699 * 117.00110 * 180.02562 * 23 21 20 38 38 H 1.08994 * 110.38534 * 278.15027 * 24 13 2 39 39 H 1.09004 * 110.37976 * 40.40599 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5419 -0.6149 -1.3125 6 1 4.0790 -0.0861 -0.5390 7 6 4.2306 -1.1936 -2.3576 8 7 3.5766 -1.8379 -3.2992 9 14 6.0922 -1.0611 -2.4366 10 1 6.7010 -2.2130 -1.7240 11 1 6.5293 -1.0696 -3.8557 12 1 6.5261 0.2047 -1.7926 13 7 2.0196 -0.6923 1.1996 14 6 1.3655 -2.0166 1.3538 15 6 1.5436 -2.3711 2.8447 16 1 0.7132 -2.9568 3.2390 17 6 2.9069 -3.0717 3.0296 18 8 3.8518 -2.0007 3.2420 19 6 3.1703 -1.0623 4.1064 20 6 1.7219 -1.0100 3.5746 21 6 0.6989 -0.7896 4.6590 22 8 -0.1405 -1.6308 4.8777 23 8 0.7201 0.3412 5.3820 24 6 1.6424 0.0462 2.4315 25 1 -0.3633 -1.0195 -0.1296 26 1 -0.3634 0.3975 0.9476 27 1 -0.3633 0.6220 -0.8182 28 1 1.7517 -1.7716 -1.2054 29 1 1.6055 -0.2619 -2.1369 30 1 4.0611 -2.2447 -4.0346 31 1 1.8581 -2.7588 0.7257 32 1 0.3068 -1.9506 1.1032 33 1 2.8798 -3.7310 3.8972 34 1 3.1680 -3.6355 2.1340 35 1 3.6350 -0.0787 4.0383 36 1 3.1834 -1.4180 5.1366 37 1 0.0440 0.4373 6.0666 38 1 2.3436 0.8600 2.6160 39 1 0.6269 0.4330 2.3464 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573579098.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:25 Heat of formation + Delta-G solvation = -143.841581 kcal Electronic energy + Delta-G solvation = -22184.189054 eV Core-core repulsion = 18898.103362 eV Total energy + Delta-G solvation = -3286.085692 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.34737 -40.49482 -38.58200 -37.19429 -35.38440 -33.99638 -32.00531 -30.82414 -29.12556 -27.10108 -25.79176 -25.13508 -24.25676 -22.68897 -20.95012 -20.13611 -19.08633 -18.40802 -18.27501 -16.97466 -16.91566 -16.54963 -16.45918 -15.94367 -15.74972 -15.19011 -14.94825 -14.84139 -14.26546 -13.75310 -13.71847 -13.60145 -13.14672 -12.88323 -12.78769 -12.61866 -12.58044 -12.49450 -12.33986 -12.33077 -12.08495 -11.80942 -11.63681 -11.50106 -11.09738 -11.05771 -10.62353 -10.45622 -9.08195 -8.07684 -6.11506 1.00432 1.43264 1.45315 1.55259 1.86864 2.49981 2.95078 3.02349 3.20334 3.32271 3.37565 3.77788 3.94443 4.05176 4.17244 4.23685 4.33820 4.41265 4.52869 4.54438 4.56314 4.62971 4.73751 4.78528 4.84986 4.87640 4.93043 5.07516 5.18886 5.25790 5.47275 5.48947 5.70172 5.83820 5.90534 6.11240 6.27296 6.48680 6.91155 7.02134 7.54304 9.04353 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024282 B = 0.006129 C = 0.005518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.844507 B = 4567.698420 C = 5073.204381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.083 3.917 3 H 0.070 0.930 4 C 0.041 3.959 5 C -0.495 4.495 6 H 0.058 0.942 7 C -0.004 4.004 8 N -0.940 5.940 9 Si 0.954 3.046 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.266 1.266 13 N -0.488 5.488 14 C 0.039 3.961 15 C -0.107 4.107 16 H 0.117 0.883 17 C 0.056 3.944 18 O -0.374 6.374 19 C 0.074 3.926 20 C -0.094 4.094 21 C 0.519 3.481 22 O -0.534 6.534 23 O -0.498 6.498 24 C 0.052 3.948 25 H 0.052 0.948 26 H 0.066 0.934 27 H 0.062 0.938 28 H -0.006 1.006 29 H -0.007 1.007 30 H 0.258 0.742 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.112 0.888 36 H 0.078 0.922 37 H 0.432 0.568 38 H 0.098 0.902 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.172 3.039 18.486 19.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.025 4.025 3 H 0.088 0.912 4 C 0.004 3.996 5 C -0.533 4.533 6 H 0.076 0.924 7 C -0.199 4.199 8 N -0.583 5.583 9 Si 0.780 3.220 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.191 1.191 13 N -0.211 5.211 14 C -0.088 4.088 15 C -0.126 4.126 16 H 0.135 0.865 17 C -0.021 4.021 18 O -0.293 6.293 19 C -0.003 4.003 20 C -0.096 4.096 21 C 0.361 3.639 22 O -0.424 6.424 23 O -0.312 6.312 24 C -0.076 4.076 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.012 0.988 29 H 0.012 0.988 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.130 0.870 36 H 0.096 0.904 37 H 0.295 0.705 38 H 0.116 0.884 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.255 2.684 17.933 18.878 hybrid contribution -0.704 -0.127 -0.166 0.734 sum -5.959 2.557 17.767 18.913 Atomic orbital electron populations 1.22427 0.97230 1.01828 1.02120 1.21769 0.92062 0.97759 0.90928 0.91168 1.18962 0.95207 0.94164 0.91316 1.21475 0.93194 1.32211 1.06468 0.92423 1.25799 1.02595 0.95741 0.95799 1.70089 1.36938 1.38165 1.13098 0.85611 0.81029 0.78636 0.76694 1.20640 1.21263 1.19086 1.65561 1.53022 1.01915 1.00633 1.23135 0.97746 0.93262 0.94697 1.23292 1.00243 0.94349 0.94667 0.86533 1.23481 0.86429 0.90142 1.02004 1.89282 1.37442 1.33575 1.68970 1.23391 0.87344 0.95845 0.93676 1.22642 0.95553 0.98266 0.93101 1.22325 0.82654 0.78736 0.80213 1.90710 1.38254 1.45635 1.67813 1.84503 1.58354 1.39389 1.48964 1.23409 1.00750 0.95332 0.88137 0.92912 0.91494 0.91881 0.98810 0.98847 0.93362 0.91664 0.92907 0.90281 0.89520 0.86988 0.90443 0.70537 0.88369 0.92715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.77 8.26 71.98 0.59 -5.17 16 2 C 0.08 3.31 2.31 44.91 0.10 3.42 16 3 H 0.07 2.81 8.13 -2.38 -0.02 2.79 16 4 C 0.04 2.11 4.44 29.85 0.13 2.24 16 5 C -0.50 -28.19 8.84 25.60 0.23 -27.97 16 6 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 7 C 0.00 -0.21 5.46 84.66 0.46 0.26 16 8 N -0.94 -58.01 13.29 21.45 0.28 -57.72 16 9 Si 0.95 46.26 29.54 68.60 2.03 48.29 16 10 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 11 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 12 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 13 N -0.49 -17.83 4.96 -853.84 -4.24 -22.07 16 14 C 0.04 1.35 4.90 86.43 0.42 1.77 16 15 C -0.11 -2.96 3.71 -9.04 -0.03 -2.99 16 16 H 0.12 3.05 6.96 -2.39 -0.02 3.03 16 17 C 0.06 1.58 7.04 72.45 0.51 2.09 16 18 O -0.37 -11.97 11.55 -148.98 -1.72 -13.69 16 19 C 0.07 1.79 6.65 72.45 0.48 2.27 16 20 C -0.09 -2.32 1.07 -50.63 -0.05 -2.37 16 21 C 0.52 11.17 7.19 71.24 0.51 11.68 16 22 O -0.53 -14.11 16.38 21.96 0.36 -13.75 16 23 O -0.50 -7.19 13.42 -51.44 -0.69 -7.88 16 24 C 0.05 1.44 5.41 86.97 0.47 1.91 16 25 H 0.05 1.76 6.36 -2.39 -0.02 1.74 16 26 H 0.07 1.84 5.99 -2.39 -0.01 1.82 16 27 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 28 H -0.01 -0.36 7.02 -2.38 -0.02 -0.38 16 29 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 30 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 31 H 0.06 2.60 6.97 -2.39 -0.02 2.59 16 32 H 0.05 1.74 5.44 -2.39 -0.01 1.72 16 33 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.09 2.67 7.49 -2.38 -0.02 2.66 16 35 H 0.11 2.48 7.55 -2.39 -0.02 2.46 16 36 H 0.08 1.50 8.00 -2.39 -0.02 1.48 16 37 H 0.43 2.15 9.10 -74.06 -0.67 1.48 16 38 H 0.10 2.59 7.56 -2.39 -0.02 2.57 16 39 H 0.05 1.42 5.70 -2.39 -0.01 1.41 16 Total: -1.00 -71.02 308.48 0.25 -70.77 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: 0.40 Total: 8.94 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: 3.83 Total: -12.87 kcal Atomic # 7 Polarization: -75.84 SS G_CDS: -3.95 Total: -79.79 kcal Atomic # 8 Polarization: -33.28 SS G_CDS: -2.05 Total: -35.33 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -71.02 0.25 -70.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573579098.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.073 kcal (2) G-P(sol) polarization free energy of solvation -71.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds