Wall clock time and date at job start Mon Mar 30 2020 01:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09005 * 109.47433 * 2 1 4 4 N 1.46503 * 109.47353 * 119.99335 * 2 1 3 5 5 C 1.34774 * 120.00392 * 275.00784 * 4 2 1 6 6 O 1.21692 * 119.99759 * 359.97438 * 5 4 2 7 7 C 1.46368 * 120.00018 * 179.97438 * 5 4 2 8 8 H 1.08004 * 120.00036 * 359.97438 * 7 5 4 9 9 C 1.40048 * 120.00010 * 180.27515 * 7 5 4 10 10 N 1.30673 * 119.99941 * 359.71913 * 9 7 5 11 11 Si 1.86797 * 120.00162 * 179.72403 * 9 7 5 12 12 H 1.48507 * 109.47064 * 89.99744 * 11 9 7 13 13 H 1.48500 * 109.47303 * 209.99513 * 11 9 7 14 14 H 1.48503 * 109.47227 * 329.99743 * 11 9 7 15 15 C 1.52997 * 109.47522 * 240.00088 * 2 1 3 16 16 H 1.09005 * 112.84509 * 294.96969 * 15 2 1 17 17 C 1.53783 * 113.61668 * 163.66737 * 15 2 1 18 18 C 1.53785 * 87.07970 * 220.01648 * 17 15 2 19 19 H 1.08997 * 113.68809 * 270.87115 * 18 17 15 20 20 C 1.50698 * 113.61428 * 139.97853 * 18 17 15 21 21 O 1.20822 * 120.00384 * 262.50015 * 20 18 17 22 22 O 1.34233 * 119.99866 * 82.50092 * 20 18 17 23 23 C 1.53776 * 113.61544 * 66.16692 * 15 2 1 24 24 C 1.53005 * 113.61321 * 254.52696 * 23 15 2 25 25 C 1.52999 * 113.61586 * 25.35233 * 23 15 2 26 26 H 1.09004 * 109.47092 * 66.32625 * 1 2 3 27 27 H 1.09001 * 109.47499 * 186.32323 * 1 2 3 28 28 H 1.09002 * 109.47468 * 306.32928 * 1 2 3 29 29 H 0.97005 * 119.99723 * 95.00073 * 4 2 1 30 30 H 0.97001 * 119.99996 * 179.97438 * 10 9 7 31 31 H 1.08998 * 113.61573 * 334.56460 * 17 15 2 32 32 H 1.08997 * 113.61820 * 105.46937 * 17 15 2 33 33 H 0.96698 * 116.99951 * 179.97438 * 22 20 18 34 34 H 1.09011 * 109.46586 * 60.00314 * 24 23 15 35 35 H 1.08997 * 109.46958 * 179.97438 * 24 23 15 36 36 H 1.08992 * 109.47479 * 300.00747 * 24 23 15 37 37 H 1.08989 * 109.47114 * 61.18437 * 25 23 15 38 38 H 1.09002 * 109.47049 * 181.18430 * 25 23 15 39 39 H 1.09000 * 109.46727 * 301.18226 * 25 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1469 -0.0181 2.3572 6 8 1.8578 1.1627 2.4117 7 6 2.6343 -0.7082 3.5524 8 1 2.8906 -1.7563 3.5042 9 6 2.7625 -0.0109 4.7602 10 7 2.4522 1.2571 4.8187 11 14 3.3773 -0.8934 6.2875 12 1 4.8570 -0.7895 6.3574 13 1 2.7796 -0.2684 7.4947 14 1 2.9840 -2.3240 6.2246 15 6 2.0400 -0.7212 -1.2492 16 1 1.7813 -1.7800 -1.2619 17 6 3.5202 -0.4431 -1.5599 18 6 3.1159 -0.3809 -3.0424 19 1 3.1525 -1.3463 -3.5471 20 6 3.8144 0.7093 -3.8134 21 8 3.2614 1.7674 -3.9991 22 8 5.0510 0.5050 -4.2938 23 6 1.7086 0.0097 -2.5610 24 6 0.5827 -0.6480 -3.3614 25 6 1.5139 1.5176 -2.3901 26 1 -0.3633 0.4127 -0.9412 27 1 -0.3634 -1.0214 0.1132 28 1 -0.3634 0.6088 0.8279 29 1 2.2490 -1.6317 1.1528 30 1 2.5406 1.7399 5.6554 31 1 3.8781 0.5076 -1.1647 32 1 4.1805 -1.2770 -1.3220 33 1 5.4582 1.2335 -4.7822 34 1 -0.3269 -0.6670 -2.7609 35 1 0.4039 -0.0777 -4.2730 36 1 0.8684 -1.6675 -3.6203 37 1 2.4348 1.9625 -2.0135 38 1 1.2624 1.9628 -3.3527 39 1 0.7055 1.7016 -1.6824 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573611788.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:56 Heat of formation + Delta-G solvation = -119.842849 kcal Electronic energy + Delta-G solvation = -21508.962180 eV Core-core repulsion = 18223.917152 eV Total energy + Delta-G solvation = -3285.045029 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.27538 -39.12445 -37.09200 -36.06107 -33.66028 -32.28415 -30.97502 -29.57367 -27.29835 -26.84120 -26.02112 -23.03630 -22.23053 -20.82737 -19.28469 -18.41733 -18.05673 -16.93850 -16.40438 -15.73635 -15.39624 -15.10116 -14.72561 -14.10242 -13.64939 -13.55093 -13.30204 -13.06519 -12.64362 -12.28950 -12.13082 -12.10179 -11.85302 -11.67271 -11.51175 -11.36194 -11.16267 -11.04563 -10.99897 -10.67991 -10.53520 -10.42958 -10.19679 -10.00441 -9.91481 -9.62530 -8.82411 -7.55720 -7.42702 -6.14839 -4.60311 2.18568 3.03177 3.15470 3.22410 3.25585 4.12007 4.25835 4.41374 4.62384 4.70871 4.73461 5.11112 5.26164 5.30749 5.44708 5.50792 5.60837 5.69684 5.79218 5.85571 5.96383 6.00423 6.03857 6.10206 6.16180 6.26809 6.30863 6.37039 6.41832 6.51406 6.71102 6.80947 6.97172 7.46402 7.89617 7.99023 8.18610 8.38177 9.06198 9.60602 10.64464 10.84266 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.028076 B = 0.004582 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.066985 B = 6109.668444 C = 6451.906321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.164 3.836 3 H 0.079 0.921 4 N -0.761 5.761 5 C 0.556 3.444 6 O -0.580 6.580 7 C -0.547 4.547 8 H 0.066 0.934 9 C 0.088 3.912 10 N -0.769 5.769 11 Si 0.905 3.095 12 H -0.273 1.273 13 H -0.280 1.280 14 H -0.265 1.265 15 C -0.105 4.105 16 H 0.094 0.906 17 C -0.109 4.109 18 C -0.108 4.108 19 H 0.121 0.879 20 C 0.486 3.514 21 O -0.506 6.506 22 O -0.520 6.520 23 C -0.051 4.051 24 C -0.138 4.138 25 C -0.122 4.122 26 H 0.053 0.947 27 H 0.046 0.954 28 H 0.059 0.941 29 H 0.378 0.622 30 H 0.267 0.733 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.405 0.595 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.152 -5.519 -16.152 17.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.058 3.942 3 H 0.097 0.903 4 N -0.416 5.416 5 C 0.360 3.640 6 O -0.463 6.463 7 C -0.584 4.584 8 H 0.084 0.916 9 C -0.131 4.131 10 N -0.398 5.398 11 Si 0.730 3.270 12 H -0.198 1.198 13 H -0.205 1.205 14 H -0.190 1.190 15 C -0.124 4.124 16 H 0.113 0.887 17 C -0.147 4.147 18 C -0.127 4.127 19 H 0.139 0.861 20 C 0.329 3.671 21 O -0.394 6.394 22 O -0.332 6.332 23 C -0.052 4.052 24 C -0.195 4.195 25 C -0.179 4.179 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.209 0.791 30 H 0.078 0.922 31 H 0.107 0.893 32 H 0.099 0.901 33 H 0.263 0.737 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.579 -4.482 -15.819 16.452 hybrid contribution 0.795 -0.494 0.353 1.000 sum 1.374 -4.976 -15.466 16.305 Atomic orbital electron populations 1.22270 0.97184 1.01269 1.01253 1.20422 0.92806 0.97143 0.83844 0.90316 1.46159 1.73128 1.12681 1.09587 1.18178 0.77748 0.86377 0.81691 1.90597 1.54776 1.16437 1.84516 1.20896 1.46970 0.97117 0.93391 0.91574 1.25690 0.93331 0.94445 0.99660 1.70023 1.35321 1.08228 1.26186 0.86416 0.79302 0.80242 0.81021 1.19808 1.20522 1.18970 1.22890 0.95045 1.00060 0.94431 0.88734 1.22864 0.97767 1.03541 0.90524 1.22794 0.96931 0.96846 0.96097 0.86103 1.23553 0.78889 0.88686 0.76007 1.90738 1.65688 1.27850 1.55116 1.84579 1.32007 1.48859 1.67776 1.21788 0.91336 0.97385 0.94710 1.21813 0.98262 0.99729 0.99694 1.21798 1.02221 0.91830 1.02071 0.92804 0.93438 0.92157 0.79122 0.92205 0.89270 0.90094 0.73711 0.91535 0.92605 0.92596 0.92369 0.91545 0.92037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 9.01 37.15 0.33 -2.47 16 2 C 0.16 3.01 1.69 -67.94 -0.11 2.90 16 3 H 0.08 1.70 6.32 -51.93 -0.33 1.37 16 4 N -0.76 -16.43 5.07 -55.22 -0.28 -16.71 16 5 C 0.56 15.58 7.71 -12.99 -0.10 15.48 16 6 O -0.58 -18.60 14.68 5.20 0.08 -18.53 16 7 C -0.55 -15.35 9.54 -35.63 -0.34 -15.69 16 8 H 0.07 1.70 7.85 -52.48 -0.41 1.29 16 9 C 0.09 2.46 5.50 -17.37 -0.10 2.37 16 10 N -0.77 -23.13 11.83 55.55 0.66 -22.48 16 11 Si 0.91 20.17 29.56 -169.99 -5.02 15.14 16 12 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 13 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 14 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 15 C -0.11 -1.43 2.75 -89.81 -0.25 -1.68 16 16 H 0.09 1.14 8.10 -51.93 -0.42 0.72 16 17 C -0.11 -1.45 6.84 -25.92 -0.18 -1.62 16 18 C -0.11 -1.23 3.76 -90.96 -0.34 -1.57 16 19 H 0.12 1.11 7.96 -51.93 -0.41 0.70 16 20 C 0.49 6.00 7.57 36.00 0.27 6.27 16 21 O -0.51 -7.49 13.46 -18.75 -0.25 -7.74 16 22 O -0.52 -5.19 13.42 -39.27 -0.53 -5.71 16 23 C -0.05 -0.64 0.67 -153.70 -0.10 -0.74 16 24 C -0.14 -1.42 9.13 37.16 0.34 -1.08 16 25 C -0.12 -1.77 5.98 37.16 0.22 -1.55 16 26 H 0.05 0.79 4.90 -51.93 -0.25 0.54 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.38 7.17 8.58 -40.82 -0.35 6.82 16 30 H 0.27 7.32 8.29 -40.82 -0.34 6.98 16 31 H 0.09 1.38 7.53 -51.93 -0.39 0.99 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.40 2.35 9.10 45.56 0.41 2.77 16 34 H 0.07 0.69 7.12 -51.92 -0.37 0.32 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.05 0.49 7.94 -51.93 -0.41 0.08 16 37 H 0.06 0.95 6.22 -51.94 -0.32 0.62 16 38 H 0.07 0.95 7.01 -51.93 -0.36 0.59 16 39 H 0.06 0.92 5.42 -51.93 -0.28 0.64 16 LS Contribution 314.42 15.07 4.74 4.74 Total: -1.00 -35.29 314.42 -5.69 -40.98 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -4.73 Total: 9.70 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -0.35 Total: 0.61 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: 0.38 Total: -39.19 kcal Atomic # 8 Polarization: -31.28 SS G_CDS: -0.70 Total: -31.98 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -35.29 -5.69 -40.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573611788.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.862 kcal (2) G-P(sol) polarization free energy of solvation -35.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds