Wall clock time and date at job start Mon Mar 30 2020 01:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09005 * 109.47433 * 2 1 4 4 N 1.46503 * 109.47353 * 119.99335 * 2 1 3 5 5 C 1.34774 * 120.00392 * 275.00784 * 4 2 1 6 6 O 1.21692 * 119.99759 * 359.97438 * 5 4 2 7 7 C 1.46368 * 120.00018 * 179.97438 * 5 4 2 8 8 H 1.08004 * 120.00036 * 359.97438 * 7 5 4 9 9 C 1.40048 * 120.00010 * 180.27515 * 7 5 4 10 10 N 1.30673 * 119.99941 * 359.71913 * 9 7 5 11 11 Si 1.86797 * 120.00162 * 179.72403 * 9 7 5 12 12 H 1.48507 * 109.47064 * 89.99744 * 11 9 7 13 13 H 1.48500 * 109.47303 * 209.99513 * 11 9 7 14 14 H 1.48503 * 109.47227 * 329.99743 * 11 9 7 15 15 C 1.52997 * 109.47522 * 240.00088 * 2 1 3 16 16 H 1.09005 * 112.84509 * 294.96969 * 15 2 1 17 17 C 1.53783 * 113.61668 * 163.66737 * 15 2 1 18 18 C 1.53785 * 87.07970 * 220.01648 * 17 15 2 19 19 H 1.08997 * 113.68809 * 270.87115 * 18 17 15 20 20 C 1.50698 * 113.61428 * 139.97853 * 18 17 15 21 21 O 1.20822 * 120.00384 * 262.50015 * 20 18 17 22 22 O 1.34233 * 119.99866 * 82.50092 * 20 18 17 23 23 C 1.53776 * 113.61544 * 66.16692 * 15 2 1 24 24 C 1.53005 * 113.61321 * 254.52696 * 23 15 2 25 25 C 1.52999 * 113.61586 * 25.35233 * 23 15 2 26 26 H 1.09004 * 109.47092 * 66.32625 * 1 2 3 27 27 H 1.09001 * 109.47499 * 186.32323 * 1 2 3 28 28 H 1.09002 * 109.47468 * 306.32928 * 1 2 3 29 29 H 0.97005 * 119.99723 * 95.00073 * 4 2 1 30 30 H 0.97001 * 119.99996 * 179.97438 * 10 9 7 31 31 H 1.08998 * 113.61573 * 334.56460 * 17 15 2 32 32 H 1.08997 * 113.61820 * 105.46937 * 17 15 2 33 33 H 0.96698 * 116.99951 * 179.97438 * 22 20 18 34 34 H 1.09011 * 109.46586 * 60.00314 * 24 23 15 35 35 H 1.08997 * 109.46958 * 179.97438 * 24 23 15 36 36 H 1.08992 * 109.47479 * 300.00747 * 24 23 15 37 37 H 1.08989 * 109.47114 * 61.18437 * 25 23 15 38 38 H 1.09002 * 109.47049 * 181.18430 * 25 23 15 39 39 H 1.09000 * 109.46727 * 301.18226 * 25 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1469 -0.0181 2.3572 6 8 1.8578 1.1627 2.4117 7 6 2.6343 -0.7082 3.5524 8 1 2.8906 -1.7563 3.5042 9 6 2.7625 -0.0109 4.7602 10 7 2.4522 1.2571 4.8187 11 14 3.3773 -0.8934 6.2875 12 1 4.8570 -0.7895 6.3574 13 1 2.7796 -0.2684 7.4947 14 1 2.9840 -2.3240 6.2246 15 6 2.0400 -0.7212 -1.2492 16 1 1.7813 -1.7800 -1.2619 17 6 3.5202 -0.4431 -1.5599 18 6 3.1159 -0.3809 -3.0424 19 1 3.1525 -1.3463 -3.5471 20 6 3.8144 0.7093 -3.8134 21 8 3.2614 1.7674 -3.9991 22 8 5.0510 0.5050 -4.2938 23 6 1.7086 0.0097 -2.5610 24 6 0.5827 -0.6480 -3.3614 25 6 1.5139 1.5176 -2.3901 26 1 -0.3633 0.4127 -0.9412 27 1 -0.3634 -1.0214 0.1132 28 1 -0.3634 0.6088 0.8279 29 1 2.2490 -1.6317 1.1528 30 1 2.5406 1.7399 5.6554 31 1 3.8781 0.5076 -1.1647 32 1 4.1805 -1.2770 -1.3220 33 1 5.4582 1.2335 -4.7822 34 1 -0.3269 -0.6670 -2.7609 35 1 0.4039 -0.0777 -4.2730 36 1 0.8684 -1.6675 -3.6203 37 1 2.4348 1.9625 -2.0135 38 1 1.2624 1.9628 -3.3527 39 1 0.7055 1.7016 -1.6824 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573611788.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:55 Heat of formation + Delta-G solvation = -146.493288 kcal Electronic energy + Delta-G solvation = -21510.117830 eV Core-core repulsion = 18223.917152 eV Total energy + Delta-G solvation = -3286.200678 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.31651 -40.24784 -38.99685 -37.02747 -35.45181 -34.42403 -32.07950 -31.20107 -28.36531 -28.08577 -27.95723 -24.32053 -23.31771 -22.25393 -21.06552 -19.70938 -19.15265 -18.52238 -17.52000 -17.34422 -16.71426 -16.66905 -15.94907 -15.66061 -14.95728 -14.90939 -14.73020 -14.24935 -14.16337 -13.89653 -13.64206 -13.27817 -13.12690 -13.00756 -12.78806 -12.69057 -12.61829 -12.58054 -12.37487 -12.14418 -12.01641 -11.92164 -11.77269 -11.23489 -10.98098 -10.90441 -10.79154 -9.76946 -9.35717 -8.25057 -6.81093 1.22472 1.40878 1.42554 1.57504 2.18596 2.26678 2.52393 3.08649 3.26645 3.54599 3.65461 3.71804 3.83819 4.23279 4.29135 4.43422 4.47592 4.52679 4.56328 4.70518 4.75350 4.85145 4.92854 4.96456 5.00102 5.14442 5.18702 5.20593 5.28952 5.34809 5.38169 5.49380 5.59465 5.72281 5.94452 6.31787 6.41599 6.90956 7.05356 7.66344 8.56528 8.73906 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.028076 B = 0.004582 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.066985 B = 6109.668444 C = 6451.906321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.163 3.837 3 H 0.035 0.965 4 N -0.746 5.746 5 C 0.540 3.460 6 O -0.634 6.634 7 C -0.574 4.574 8 H 0.088 0.912 9 C 0.028 3.972 10 N -0.825 5.825 11 Si 0.996 3.004 12 H -0.263 1.263 13 H -0.276 1.276 14 H -0.247 1.247 15 C -0.097 4.097 16 H 0.128 0.872 17 C -0.114 4.114 18 C -0.094 4.094 19 H 0.160 0.840 20 C 0.486 3.514 21 O -0.539 6.539 22 O -0.515 6.515 23 C -0.050 4.050 24 C -0.134 4.134 25 C -0.116 4.116 26 H 0.081 0.919 27 H 0.067 0.933 28 H 0.014 0.986 29 H 0.394 0.606 30 H 0.272 0.728 31 H 0.053 0.947 32 H 0.099 0.901 33 H 0.423 0.577 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.083 0.917 37 H 0.029 0.971 38 H 0.066 0.934 39 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.723 -8.919 -17.234 19.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.058 3.942 3 H 0.053 0.947 4 N -0.400 5.400 5 C 0.344 3.656 6 O -0.521 6.521 7 C -0.611 4.611 8 H 0.106 0.894 9 C -0.186 4.186 10 N -0.455 5.455 11 Si 0.815 3.185 12 H -0.187 1.187 13 H -0.201 1.201 14 H -0.170 1.170 15 C -0.115 4.115 16 H 0.146 0.854 17 C -0.152 4.152 18 C -0.112 4.112 19 H 0.177 0.823 20 C 0.330 3.670 21 O -0.429 6.429 22 O -0.328 6.328 23 C -0.051 4.051 24 C -0.191 4.191 25 C -0.173 4.173 26 H 0.099 0.901 27 H 0.086 0.914 28 H 0.033 0.967 29 H 0.228 0.772 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.118 0.882 33 H 0.284 0.716 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.102 0.898 37 H 0.048 0.952 38 H 0.085 0.915 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.169 -7.934 -16.965 18.765 hybrid contribution 0.652 0.631 0.605 1.090 sum 1.821 -7.302 -16.360 18.008 Atomic orbital electron populations 1.22170 0.96294 1.01707 1.00846 1.20512 0.93460 0.95467 0.84768 0.94653 1.45801 1.71898 1.13248 1.09042 1.18557 0.77467 0.85980 0.83619 1.90556 1.56990 1.18776 1.85808 1.21462 1.47260 0.98283 0.94078 0.89393 1.26961 0.92792 0.95094 1.03794 1.70209 1.36999 1.10688 1.27625 0.85051 0.78803 0.79289 0.75325 1.18725 1.20090 1.17034 1.22889 0.95277 1.01229 0.92153 0.85385 1.22807 0.97747 1.02475 0.92168 1.22804 0.95381 0.98175 0.94871 0.82271 1.23719 0.79339 0.88323 0.75633 1.90737 1.66622 1.29055 1.56454 1.84526 1.30897 1.49764 1.67620 1.21733 0.93441 0.95479 0.94423 1.21810 0.97055 1.00993 0.99259 1.21690 1.00172 0.94075 1.01342 0.90083 0.91412 0.96688 0.77191 0.91815 0.92773 0.88241 0.71599 0.91537 0.92296 0.89832 0.95222 0.91462 0.93475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.32 9.01 71.98 0.65 -4.67 16 2 C 0.16 6.11 1.69 44.99 0.08 6.18 16 3 H 0.04 1.64 6.32 -2.38 -0.02 1.63 16 4 N -0.75 -32.53 5.07 -446.84 -2.27 -34.80 16 5 C 0.54 31.33 7.71 86.36 0.67 31.99 16 6 O -0.63 -43.11 14.68 -4.32 -0.06 -43.18 16 7 C -0.57 -32.54 9.54 24.83 0.24 -32.31 16 8 H 0.09 4.42 7.85 -2.91 -0.02 4.40 16 9 C 0.03 1.58 5.50 85.30 0.47 2.05 16 10 N -0.83 -51.48 11.83 21.84 0.26 -51.22 16 11 Si 1.00 41.25 29.56 68.60 2.03 43.28 16 12 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 13 H -0.28 -11.13 7.11 99.48 0.71 -10.42 16 14 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 15 C -0.10 -2.45 2.75 -10.27 -0.03 -2.48 16 16 H 0.13 2.49 8.10 -2.38 -0.02 2.47 16 17 C -0.11 -2.87 6.84 31.12 0.21 -2.66 16 18 C -0.09 -1.88 3.76 -11.01 -0.04 -1.92 16 19 H 0.16 2.05 7.96 -2.39 -0.02 2.04 16 20 C 0.49 11.26 7.57 71.24 0.54 11.80 16 21 O -0.54 -15.83 13.46 21.98 0.30 -15.53 16 22 O -0.51 -9.13 13.42 -51.44 -0.69 -9.82 16 23 C -0.05 -1.14 0.67 -51.66 -0.03 -1.18 16 24 C -0.13 -2.27 9.13 71.98 0.66 -1.61 16 25 C -0.12 -3.46 5.98 71.98 0.43 -3.03 16 26 H 0.08 2.36 4.90 -2.38 -0.01 2.35 16 27 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.39 14.45 8.58 -92.70 -0.80 13.66 16 30 H 0.27 15.42 8.29 -92.71 -0.77 14.66 16 31 H 0.05 1.75 7.53 -2.39 -0.02 1.73 16 32 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.42 4.13 9.10 -74.06 -0.67 3.46 16 34 H 0.07 1.14 7.12 -2.38 -0.02 1.12 16 35 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.08 1.00 7.94 -2.39 -0.02 0.98 16 37 H 0.03 1.02 6.22 -2.39 -0.01 1.01 16 38 H 0.07 1.96 7.01 -2.39 -0.02 1.94 16 39 H 0.05 1.49 5.42 -2.39 -0.01 1.48 16 Total: -1.00 -82.27 314.42 3.01 -79.26 By element: Atomic # 1 Polarization: 30.21 SS G_CDS: -0.38 Total: 29.83 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: 3.83 Total: 2.19 kcal Atomic # 7 Polarization: -84.01 SS G_CDS: -2.01 Total: -86.02 kcal Atomic # 8 Polarization: -68.08 SS G_CDS: -0.46 Total: -68.53 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.28 kcal Total: -82.27 3.01 -79.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573611788.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.238 kcal (2) G-P(sol) polarization free energy of solvation -82.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds