Wall clock time and date at job start Mon Mar 30 2020 01:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.47476 * 2 1 4 4 N 1.46507 * 109.46913 * 239.99745 * 2 1 3 5 5 C 1.34770 * 119.99836 * 84.72823 * 4 2 1 6 6 O 1.21694 * 120.00169 * 0.27563 * 5 4 2 7 7 C 1.46374 * 120.00348 * 180.27173 * 5 4 2 8 8 H 1.08003 * 119.99751 * 0.02562 * 7 5 4 9 9 C 1.40046 * 120.00480 * 179.97438 * 7 5 4 10 10 N 1.30669 * 119.99858 * 0.02562 * 9 7 5 11 11 Si 1.86799 * 120.00119 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46862 * 90.00363 * 11 9 7 13 13 H 1.48491 * 109.47615 * 210.00225 * 11 9 7 14 14 H 1.48505 * 109.47097 * 330.00900 * 11 9 7 15 15 C 1.53001 * 109.47067 * 120.00116 * 2 1 3 16 16 H 1.09003 * 112.85277 * 66.17486 * 15 2 1 17 17 C 1.53785 * 113.61368 * 294.98075 * 15 2 1 18 18 C 1.53778 * 87.07960 * 220.01991 * 17 15 2 19 19 H 1.09001 * 113.61459 * 270.79722 * 18 17 15 20 20 C 1.50700 * 113.61581 * 139.98302 * 18 17 15 21 21 O 1.20821 * 119.99727 * 259.50361 * 20 18 17 22 22 O 1.34232 * 120.00048 * 79.49702 * 20 18 17 23 23 C 1.53779 * 113.61600 * 197.37245 * 15 2 1 24 24 C 1.52998 * 113.61657 * 254.53032 * 23 15 2 25 25 C 1.53001 * 113.61291 * 25.43315 * 23 15 2 26 26 H 1.09003 * 109.47309 * 65.05261 * 1 2 3 27 27 H 1.09001 * 109.47934 * 185.05291 * 1 2 3 28 28 H 1.09002 * 109.47361 * 305.06059 * 1 2 3 29 29 H 0.96997 * 120.00066 * 264.99922 * 4 2 1 30 30 H 0.97003 * 119.99701 * 179.97438 * 10 9 7 31 31 H 1.08995 * 113.60861 * 334.56956 * 17 15 2 32 32 H 1.08999 * 113.61303 * 105.38508 * 17 15 2 33 33 H 0.96701 * 116.99624 * 179.97438 * 22 20 18 34 34 H 1.09001 * 109.47152 * 59.99429 * 24 23 15 35 35 H 1.09001 * 109.47025 * 179.97438 * 24 23 15 36 36 H 1.09006 * 109.47041 * 300.00239 * 24 23 15 37 37 H 1.08996 * 109.47233 * 61.09210 * 25 23 15 38 38 H 1.09000 * 109.46968 * 181.09470 * 25 23 15 39 39 H 1.09003 * 109.46842 * 301.09270 * 25 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6907 -1.1962 5 6 2.1417 -0.0198 -2.3585 6 8 1.8524 1.1610 -2.4132 7 6 2.6239 -0.7112 -3.5551 8 1 2.8804 -1.7592 -3.5067 9 6 2.7517 -0.0141 -4.7630 10 7 2.4410 1.2537 -4.8217 11 14 3.3678 -0.8964 -6.2899 12 1 2.2146 -1.4694 -7.0296 13 1 4.0862 0.0668 -7.1624 14 1 4.2922 -1.9883 -5.8916 15 6 2.0399 -0.7213 1.2492 16 1 1.7985 -1.7842 1.2526 17 6 1.6842 -0.0047 2.5626 18 6 3.0931 -0.3756 3.0548 19 1 3.1407 -1.3436 3.5535 20 6 3.7664 0.7207 3.8396 21 8 4.5921 1.4246 3.3081 22 8 3.4487 0.9152 5.1292 23 6 3.5131 -0.4232 1.5744 24 6 4.4600 -1.5779 1.2415 25 6 4.0004 0.9219 1.0321 26 1 -0.3634 0.4335 -0.9318 27 1 -0.3635 -1.0236 0.0905 28 1 -0.3634 0.5903 0.8412 29 1 2.2489 -1.6318 -1.1526 30 1 2.5299 1.7366 -5.6583 31 1 1.5304 1.0681 2.4468 32 1 0.8835 -0.4893 3.1213 33 1 3.9073 1.6302 5.5913 34 1 4.4007 -1.8009 0.1762 35 1 5.4813 -1.2955 1.4969 36 1 4.1726 -2.4601 1.8137 37 1 3.4160 1.7266 1.4779 38 1 5.0528 1.0550 1.2829 39 1 3.8797 0.9421 -0.0511 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573611789.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:58 Heat of formation + Delta-G solvation = -120.796810 kcal Electronic energy + Delta-G solvation = -21676.424738 eV Core-core repulsion = 18391.338343 eV Total energy + Delta-G solvation = -3285.086395 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.21091 -39.09028 -37.04844 -36.05230 -33.66054 -32.27623 -30.83727 -29.51772 -27.17258 -26.71264 -26.04159 -23.33920 -22.06768 -20.66932 -19.25693 -18.36748 -18.05495 -16.95193 -16.38722 -15.73972 -15.34406 -14.99599 -14.36178 -14.29645 -13.96706 -13.52840 -13.12713 -12.85283 -12.56638 -12.28780 -12.03003 -11.96494 -11.71015 -11.61901 -11.48895 -11.36767 -11.18711 -11.02080 -10.93143 -10.81176 -10.45479 -10.38421 -10.18255 -9.98781 -9.89506 -9.55137 -8.81068 -7.54158 -7.40134 -6.13498 -4.58704 2.20556 3.03810 3.16364 3.23429 3.26483 4.13105 4.31258 4.49304 4.60957 4.66283 4.75554 5.13761 5.30683 5.41660 5.51640 5.58490 5.62716 5.75237 5.81040 5.88333 5.99172 6.01570 6.10359 6.23665 6.28379 6.30393 6.38779 6.45674 6.54789 6.56569 6.78106 6.93003 6.96701 7.47717 7.91431 8.00445 8.19952 8.39663 9.07755 9.62300 10.65852 10.85977 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.030394 B = 0.004797 C = 0.004609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.011713 B = 5835.806709 C = 6073.767816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.161 3.839 3 H 0.082 0.918 4 N -0.758 5.758 5 C 0.558 3.442 6 O -0.580 6.580 7 C -0.546 4.546 8 H 0.065 0.935 9 C 0.089 3.911 10 N -0.768 5.768 11 Si 0.904 3.096 12 H -0.273 1.273 13 H -0.280 1.280 14 H -0.266 1.266 15 C -0.107 4.107 16 H 0.094 0.906 17 C -0.110 4.110 18 C -0.108 4.108 19 H 0.121 0.879 20 C 0.484 3.516 21 O -0.502 6.502 22 O -0.522 6.522 23 C -0.048 4.048 24 C -0.137 4.137 25 C -0.118 4.118 26 H 0.061 0.939 27 H 0.045 0.955 28 H 0.046 0.954 29 H 0.377 0.623 30 H 0.267 0.733 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.404 0.596 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.049 0.951 38 H 0.064 0.936 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.791 -5.355 16.200 17.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.054 3.946 3 H 0.100 0.900 4 N -0.412 5.412 5 C 0.361 3.639 6 O -0.463 6.463 7 C -0.584 4.584 8 H 0.084 0.916 9 C -0.131 4.131 10 N -0.397 5.397 11 Si 0.729 3.271 12 H -0.198 1.198 13 H -0.205 1.205 14 H -0.190 1.190 15 C -0.125 4.125 16 H 0.112 0.888 17 C -0.149 4.149 18 C -0.127 4.127 19 H 0.139 0.861 20 C 0.326 3.674 21 O -0.389 6.389 22 O -0.334 6.334 23 C -0.049 4.049 24 C -0.194 4.194 25 C -0.175 4.175 26 H 0.081 0.919 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.208 0.792 30 H 0.078 0.922 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.262 0.738 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.598 -4.409 15.674 16.293 hybrid contribution 0.682 -0.474 -0.289 0.879 sum 1.279 -4.883 15.384 16.191 Atomic orbital electron populations 1.22174 0.97305 1.00562 1.01658 1.20475 0.92474 0.97537 0.84074 0.89988 1.46117 1.73077 1.12672 1.09366 1.18149 0.77693 0.86367 0.81656 1.90600 1.54696 1.16433 1.84593 1.20890 1.47084 0.97062 0.93322 0.91633 1.25676 0.93341 0.94417 0.99627 1.70021 1.35466 1.08184 1.26064 0.86432 0.79313 0.79812 0.81525 1.19848 1.20543 1.18975 1.22916 0.95016 1.00118 0.94493 0.88778 1.22831 0.93645 1.01863 0.96513 1.22847 0.98287 0.96423 0.95154 0.86119 1.23573 0.79818 0.84388 0.79608 1.90759 1.32103 1.46616 1.69418 1.84577 1.66584 1.56120 1.26155 1.21813 0.95243 0.97833 0.89974 1.21762 0.98667 0.96253 1.02715 1.21685 1.01380 0.93124 1.01342 0.91943 0.93599 0.93482 0.79167 0.92236 0.89416 0.90179 0.73780 0.91033 0.92730 0.92920 0.93167 0.91710 0.91226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 9.26 37.15 0.34 -2.37 16 2 C 0.16 2.92 1.66 -67.93 -0.11 2.80 16 3 H 0.08 1.75 5.68 -51.93 -0.30 1.45 16 4 N -0.76 -16.13 5.05 -55.21 -0.28 -16.41 16 5 C 0.56 15.43 7.71 -12.99 -0.10 15.33 16 6 O -0.58 -18.41 14.68 5.19 0.08 -18.33 16 7 C -0.55 -15.26 9.54 -35.63 -0.34 -15.60 16 8 H 0.07 1.68 7.85 -52.48 -0.41 1.27 16 9 C 0.09 2.48 5.50 -17.37 -0.10 2.38 16 10 N -0.77 -23.08 11.83 55.55 0.66 -22.42 16 11 Si 0.90 20.21 29.56 -169.99 -5.02 15.18 16 12 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 13 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 14 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 15 C -0.11 -1.44 2.76 -89.81 -0.25 -1.69 16 16 H 0.09 1.13 8.10 -51.93 -0.42 0.71 16 17 C -0.11 -1.28 6.21 -25.92 -0.16 -1.44 16 18 C -0.11 -1.24 3.76 -90.87 -0.34 -1.58 16 19 H 0.12 1.12 7.97 -51.93 -0.41 0.70 16 20 C 0.48 5.99 7.52 36.01 0.27 6.26 16 21 O -0.50 -7.74 13.58 -18.75 -0.25 -8.00 16 22 O -0.52 -4.99 13.42 -39.26 -0.53 -5.52 16 23 C -0.05 -0.67 1.20 -153.61 -0.18 -0.86 16 24 C -0.14 -1.75 9.20 37.16 0.34 -1.41 16 25 C -0.12 -2.03 6.01 37.16 0.22 -1.81 16 26 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.69 7.77 -51.93 -0.40 0.28 16 29 H 0.38 7.13 8.58 -40.82 -0.35 6.78 16 30 H 0.27 7.31 8.29 -40.82 -0.34 6.97 16 31 H 0.09 1.10 7.58 -51.93 -0.39 0.71 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.40 2.22 9.10 45.56 0.41 2.64 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.05 0.55 7.95 -51.93 -0.41 0.13 16 37 H 0.05 0.87 6.30 -51.93 -0.33 0.54 16 38 H 0.06 1.13 6.98 -51.93 -0.36 0.76 16 39 H 0.07 1.43 7.03 -51.93 -0.37 1.07 16 LS Contribution 319.65 15.07 4.82 4.82 Total: -1.00 -35.02 319.65 -5.93 -40.95 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -4.99 Total: 9.71 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -0.40 Total: 0.01 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: 0.38 Total: -38.82 kcal Atomic # 8 Polarization: -31.14 SS G_CDS: -0.71 Total: -31.85 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -35.02 -5.93 -40.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573611789.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.851 kcal (2) G-P(sol) polarization free energy of solvation -35.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds