Wall clock time and date at job start Mon Mar 30 2020 01:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.47476 * 2 1 4 4 N 1.46507 * 109.46913 * 239.99745 * 2 1 3 5 5 C 1.34770 * 119.99836 * 84.72823 * 4 2 1 6 6 O 1.21694 * 120.00169 * 0.27563 * 5 4 2 7 7 C 1.46374 * 120.00348 * 180.27173 * 5 4 2 8 8 H 1.08003 * 119.99751 * 0.02562 * 7 5 4 9 9 C 1.40046 * 120.00480 * 179.97438 * 7 5 4 10 10 N 1.30669 * 119.99858 * 0.02562 * 9 7 5 11 11 Si 1.86799 * 120.00119 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46862 * 90.00363 * 11 9 7 13 13 H 1.48491 * 109.47615 * 210.00225 * 11 9 7 14 14 H 1.48505 * 109.47097 * 330.00900 * 11 9 7 15 15 C 1.53001 * 109.47067 * 120.00116 * 2 1 3 16 16 H 1.09003 * 112.85277 * 66.17486 * 15 2 1 17 17 C 1.53785 * 113.61368 * 294.98075 * 15 2 1 18 18 C 1.53778 * 87.07960 * 220.01991 * 17 15 2 19 19 H 1.09001 * 113.61459 * 270.79722 * 18 17 15 20 20 C 1.50700 * 113.61581 * 139.98302 * 18 17 15 21 21 O 1.20821 * 119.99727 * 259.50361 * 20 18 17 22 22 O 1.34232 * 120.00048 * 79.49702 * 20 18 17 23 23 C 1.53779 * 113.61600 * 197.37245 * 15 2 1 24 24 C 1.52998 * 113.61657 * 254.53032 * 23 15 2 25 25 C 1.53001 * 113.61291 * 25.43315 * 23 15 2 26 26 H 1.09003 * 109.47309 * 65.05261 * 1 2 3 27 27 H 1.09001 * 109.47934 * 185.05291 * 1 2 3 28 28 H 1.09002 * 109.47361 * 305.06059 * 1 2 3 29 29 H 0.96997 * 120.00066 * 264.99922 * 4 2 1 30 30 H 0.97003 * 119.99701 * 179.97438 * 10 9 7 31 31 H 1.08995 * 113.60861 * 334.56956 * 17 15 2 32 32 H 1.08999 * 113.61303 * 105.38508 * 17 15 2 33 33 H 0.96701 * 116.99624 * 179.97438 * 22 20 18 34 34 H 1.09001 * 109.47152 * 59.99429 * 24 23 15 35 35 H 1.09001 * 109.47025 * 179.97438 * 24 23 15 36 36 H 1.09006 * 109.47041 * 300.00239 * 24 23 15 37 37 H 1.08996 * 109.47233 * 61.09210 * 25 23 15 38 38 H 1.09000 * 109.46968 * 181.09470 * 25 23 15 39 39 H 1.09003 * 109.46842 * 301.09270 * 25 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6907 -1.1962 5 6 2.1417 -0.0198 -2.3585 6 8 1.8524 1.1610 -2.4132 7 6 2.6239 -0.7112 -3.5551 8 1 2.8804 -1.7592 -3.5067 9 6 2.7517 -0.0141 -4.7630 10 7 2.4410 1.2537 -4.8217 11 14 3.3678 -0.8964 -6.2899 12 1 2.2146 -1.4694 -7.0296 13 1 4.0862 0.0668 -7.1624 14 1 4.2922 -1.9883 -5.8916 15 6 2.0399 -0.7213 1.2492 16 1 1.7985 -1.7842 1.2526 17 6 1.6842 -0.0047 2.5626 18 6 3.0931 -0.3756 3.0548 19 1 3.1407 -1.3436 3.5535 20 6 3.7664 0.7207 3.8396 21 8 4.5921 1.4246 3.3081 22 8 3.4487 0.9152 5.1292 23 6 3.5131 -0.4232 1.5744 24 6 4.4600 -1.5779 1.2415 25 6 4.0004 0.9219 1.0321 26 1 -0.3634 0.4335 -0.9318 27 1 -0.3635 -1.0236 0.0905 28 1 -0.3634 0.5903 0.8412 29 1 2.2489 -1.6318 -1.1526 30 1 2.5299 1.7366 -5.6583 31 1 1.5304 1.0681 2.4468 32 1 0.8835 -0.4893 3.1213 33 1 3.9073 1.6302 5.5913 34 1 4.4007 -1.8009 0.1762 35 1 5.4813 -1.2955 1.4969 36 1 4.1726 -2.4601 1.8137 37 1 3.4160 1.7266 1.4779 38 1 5.0528 1.0550 1.2829 39 1 3.8797 0.9421 -0.0511 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573611789.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:57 Heat of formation + Delta-G solvation = -147.329367 kcal Electronic energy + Delta-G solvation = -21677.575276 eV Core-core repulsion = 18391.338343 eV Total energy + Delta-G solvation = -3286.236933 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.26278 -40.22294 -38.92380 -37.00584 -35.43137 -34.40825 -32.09052 -31.07714 -28.42333 -28.12506 -27.82186 -24.59957 -23.11303 -22.14467 -21.00027 -19.68726 -19.10946 -18.55071 -17.52683 -17.31713 -16.74348 -16.50386 -15.88203 -15.58866 -15.40082 -14.74547 -14.56974 -14.27093 -14.12847 -13.85273 -13.47487 -13.23189 -13.20249 -12.90789 -12.73398 -12.68920 -12.65385 -12.55778 -12.44489 -12.19730 -12.11190 -11.98089 -11.67780 -11.18855 -11.01909 -10.90486 -10.75407 -9.74715 -9.30114 -8.23977 -6.79398 1.26136 1.40001 1.41817 1.56355 2.20638 2.26416 2.54134 3.11311 3.34252 3.48690 3.69119 3.72820 3.87072 4.26705 4.29921 4.47519 4.52903 4.54178 4.67102 4.69793 4.77058 4.86484 4.91020 4.95731 5.01261 5.12127 5.18384 5.22134 5.29586 5.35595 5.44536 5.44702 5.59530 5.74029 5.96132 6.33099 6.45428 6.92272 7.08462 7.68774 8.58323 8.76302 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.030394 B = 0.004797 C = 0.004609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.011713 B = 5835.806709 C = 6073.767816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.158 3.842 3 H 0.040 0.960 4 N -0.742 5.742 5 C 0.544 3.456 6 O -0.633 6.633 7 C -0.575 4.575 8 H 0.085 0.915 9 C 0.029 3.971 10 N -0.825 5.825 11 Si 0.993 3.007 12 H -0.262 1.262 13 H -0.276 1.276 14 H -0.249 1.249 15 C -0.098 4.098 16 H 0.127 0.873 17 C -0.102 4.102 18 C -0.093 4.093 19 H 0.161 0.839 20 C 0.486 3.514 21 O -0.543 6.543 22 O -0.511 6.511 23 C -0.060 4.060 24 C -0.133 4.133 25 C -0.102 4.102 26 H 0.014 0.986 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.392 0.608 30 H 0.271 0.729 31 H 0.070 0.930 32 H 0.117 0.883 33 H 0.423 0.577 34 H 0.050 0.950 35 H 0.048 0.952 36 H 0.089 0.911 37 H 0.038 0.962 38 H 0.054 0.946 39 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.558 -8.550 18.078 20.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.053 3.947 3 H 0.058 0.942 4 N -0.395 5.395 5 C 0.347 3.653 6 O -0.520 6.520 7 C -0.612 4.612 8 H 0.104 0.896 9 C -0.185 4.185 10 N -0.455 5.455 11 Si 0.813 3.187 12 H -0.186 1.186 13 H -0.201 1.201 14 H -0.172 1.172 15 C -0.117 4.117 16 H 0.145 0.855 17 C -0.140 4.140 18 C -0.112 4.112 19 H 0.178 0.822 20 C 0.330 3.670 21 O -0.433 6.433 22 O -0.325 6.325 23 C -0.061 4.061 24 C -0.190 4.190 25 C -0.160 4.160 26 H 0.033 0.967 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.226 0.774 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.136 0.864 33 H 0.284 0.716 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.108 0.892 37 H 0.057 0.943 38 H 0.073 0.927 39 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 0.354 -7.649 17.631 19.222 hybrid contribution 0.750 0.591 -0.753 1.216 sum 1.104 -7.057 16.878 18.327 Atomic orbital electron populations 1.22082 0.96189 1.02301 1.00315 1.20602 0.93287 0.95919 0.84937 0.94219 1.45736 1.71816 1.13114 1.08877 1.18469 0.77321 0.85932 0.83550 1.90554 1.56877 1.18724 1.85890 1.21455 1.47437 0.98162 0.94141 0.89650 1.26920 0.92833 0.95068 1.03702 1.70207 1.37216 1.10603 1.27457 0.85088 0.79050 0.78523 0.76043 1.18621 1.20149 1.17200 1.22916 0.94548 1.01472 0.92754 0.85476 1.22815 0.95023 1.01012 0.95160 1.22829 0.97213 0.97934 0.93221 0.82176 1.23733 0.79037 0.83956 0.80256 1.90764 1.34081 1.48057 1.70438 1.84517 1.66355 1.56849 1.24764 1.21794 0.95749 0.95982 0.92537 1.21746 0.98232 0.97051 1.02005 1.21469 1.00776 0.95624 0.98091 0.96693 0.90879 0.90703 0.77450 0.91888 0.91165 0.86427 0.71621 0.93069 0.93277 0.89225 0.94280 0.92672 0.96002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.10 9.26 71.98 0.67 -4.43 16 2 C 0.16 5.81 1.66 44.99 0.07 5.89 16 3 H 0.04 1.81 5.68 -2.39 -0.01 1.80 16 4 N -0.74 -32.29 5.05 -446.82 -2.25 -34.55 16 5 C 0.54 31.53 7.71 86.36 0.67 32.19 16 6 O -0.63 -42.95 14.68 -4.33 -0.06 -43.01 16 7 C -0.58 -32.87 9.54 24.83 0.24 -32.64 16 8 H 0.09 4.36 7.85 -2.91 -0.02 4.34 16 9 C 0.03 1.66 5.50 85.30 0.47 2.13 16 10 N -0.82 -51.75 11.83 21.83 0.26 -51.49 16 11 Si 0.99 41.81 29.56 68.60 2.03 43.84 16 12 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 13 H -0.28 -11.35 7.11 99.48 0.71 -10.65 16 14 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 15 C -0.10 -2.42 2.76 -10.27 -0.03 -2.45 16 16 H 0.13 2.40 8.10 -2.39 -0.02 2.38 16 17 C -0.10 -2.00 6.21 31.12 0.19 -1.81 16 18 C -0.09 -1.80 3.76 -10.96 -0.04 -1.84 16 19 H 0.16 1.94 7.97 -2.39 -0.02 1.92 16 20 C 0.49 10.95 7.52 71.24 0.54 11.48 16 21 O -0.54 -16.64 13.58 21.98 0.30 -16.34 16 22 O -0.51 -8.11 13.42 -51.43 -0.69 -8.80 16 23 C -0.06 -1.59 1.20 -51.60 -0.06 -1.65 16 24 C -0.13 -3.13 9.20 71.98 0.66 -2.47 16 25 C -0.10 -3.73 6.01 71.98 0.43 -3.29 16 26 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.07 2.09 7.77 -2.39 -0.02 2.07 16 29 H 0.39 14.60 8.58 -92.71 -0.80 13.80 16 30 H 0.27 15.51 8.29 -92.71 -0.77 14.74 16 31 H 0.07 1.66 7.58 -2.39 -0.02 1.64 16 32 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.42 3.50 9.10 -74.06 -0.67 2.83 16 34 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.05 1.19 8.14 -2.39 -0.02 1.18 16 36 H 0.09 1.45 7.95 -2.38 -0.02 1.43 16 37 H 0.04 1.45 6.30 -2.39 -0.02 1.43 16 38 H 0.05 2.04 6.98 -2.39 -0.02 2.03 16 39 H 0.02 0.96 7.03 -2.39 -0.02 0.95 16 Total: -1.00 -83.58 319.65 2.99 -80.59 By element: Atomic # 1 Polarization: 29.04 SS G_CDS: -0.39 Total: 28.64 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: 3.80 Total: 1.12 kcal Atomic # 7 Polarization: -84.04 SS G_CDS: -2.00 Total: -86.04 kcal Atomic # 8 Polarization: -67.70 SS G_CDS: -0.46 Total: -68.15 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Total: -83.58 2.99 -80.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573611789.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.742 kcal (2) G-P(sol) polarization free energy of solvation -83.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds